Experiment set14IT071 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS23895 +2.5 3.3 Xaa-Pro aminopeptidase compare
BWI76_RS04895 +1.5 2.5 hypothetical protein compare
BWI76_RS08765 +1.4 2.9 8-amino-7-oxononanoate synthase compare
BWI76_RS01585 +1.3 5.2 transcriptional regulator compare
BWI76_RS21275 +1.3 6.8 lytic transglycosylase F compare
BWI76_RS18165 +1.2 1.3 NUDIX pyrophosphatase compare
BWI76_RS23030 +1.2 2.1 cobalamin biosynthesis protein CbiM compare
BWI76_RS05465 +1.2 1.5 amidohydrolase compare
BWI76_RS14075 +1.1 1.3 TetR family transcriptional regulator compare
BWI76_RS03040 +1.1 3.2 leucyl aminopeptidase compare
BWI76_RS13445 +1.1 1.4 alpha/beta hydrolase compare
BWI76_RS11430 +1.1 1.0 lipoprotein compare
BWI76_RS03045 +1.1 1.8 hypothetical protein compare
BWI76_RS16760 +1.1 3.3 lipase compare
BWI76_RS20970 +1.0 1.9 phosphoribosylglycinamide formyltransferase compare
BWI76_RS15975 +1.0 0.9 hypothetical protein compare
BWI76_RS13215 +1.0 1.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS14775 +1.0 2.7 creatinine amidohydrolase compare
BWI76_RS27395 +1.0 3.5 hypothetical protein compare
BWI76_RS20750 +1.0 0.7 carboxysome structural protein EutK compare
BWI76_RS21565 +1.0 0.9 outer membrane protein assembly factor BamE compare
BWI76_RS11810 +1.0 1.8 outer membrane protein OmpW compare
BWI76_RS05790 +0.9 1.2 phage DNA-binding protein compare
BWI76_RS00865 +0.9 3.2 DNA-binding transcriptional regulator OxyR compare
BWI76_RS19310 +0.9 2.5 ABC transporter permease compare
BWI76_RS19240 +0.9 1.7 ABC transporter substrate-binding protein compare
BWI76_RS08380 +0.9 1.3 endonuclease VIII compare
BWI76_RS12780 +0.9 1.4 hypothetical protein compare
BWI76_RS23250 +0.9 2.2 hypothetical protein compare
BWI76_RS23065 +0.9 1.2 cobalt-precorrin-6Y C(15)-methyltransferase compare
BWI76_RS10575 +0.9 1.0 polar amino acid ABC transporter permease compare
BWI76_RS11605 +0.9 4.2 DNA topoisomerase III compare
BWI76_RS11780 +0.9 1.3 2-deoxyglucose-6-phosphatase compare
BWI76_RS06175 +0.9 3.2 DUF188 domain-containing protein compare
BWI76_RS18810 +0.9 1.5 nitrogenase iron protein compare
BWI76_RS21810 +0.9 1.3 universal stress protein compare
BWI76_RS18130 +0.9 3.3 zinc ABC transporter substrate-binding protein compare
BWI76_RS23340 +0.9 1.3 transcriptional regulator compare
BWI76_RS13170 +0.9 1.1 methyltransferase compare
BWI76_RS15260 +0.9 1.1 hypothetical protein compare
BWI76_RS20765 +0.8 3.1 ethanolamine ammonia lyase large subunit compare
BWI76_RS00025 +0.8 1.0 hypothetical protein compare
BWI76_RS01590 +0.8 3.1 hypothetical protein compare
BWI76_RS08835 +0.8 2.0 molybdopterin guanine dinucleotide biosynthesis protein MoaE compare
BWI76_RS17970 +0.8 2.3 zinc metalloprotease HtpX compare
BWI76_RS08650 +0.8 1.6 molybdate ABC transporter permease compare
BWI76_RS02625 +0.8 2.8 PTS ascorbate transporter subunit IIB compare
BWI76_RS20155 +0.8 0.7 NADH-quinone oxidoreductase subunit I compare
BWI76_RS12875 +0.8 2.6 bifunctional deaminase-reductase compare
BWI76_RS14435 +0.8 1.2 glutamine ABC transporter ATP-binding protein compare
BWI76_RS14680 +0.8 1.7 SefF compare
BWI76_RS03515 +0.8 2.7 hypothetical protein compare
BWI76_RS07765 +0.8 1.7 thioesterase compare
BWI76_RS04275 +0.8 4.0 molybdopterin adenylyltransferase compare
BWI76_RS09085 +0.8 4.8 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS01545 +0.8 2.1 thiamine biosynthesis protein ThiS compare
BWI76_RS12550 +0.8 1.7 hypothetical protein compare
BWI76_RS19695 +0.8 1.8 membrane protein compare
BWI76_RS06400 +0.8 1.4 oxidative-stress-resistance chaperone compare
BWI76_RS14980 +0.8 0.7 hypothetical protein compare
BWI76_RS04805 +0.8 2.5 8-oxo-dGTP diphosphatase compare
BWI76_RS06465 +0.8 1.8 IclR family transcriptional regulator compare
BWI76_RS02045 +0.8 3.3 LysR family transcriptional regulator compare
BWI76_RS01620 +0.8 1.6 hypothetical protein compare
BWI76_RS20995 +0.8 2.7 RNA degradosome polyphosphate kinase compare
BWI76_RS16970 +0.8 4.2 murein L,D-transpeptidase compare
BWI76_RS23915 +0.8 1.4 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS25915 +0.8 3.0 protein SlyX compare
BWI76_RS12575 +0.8 2.7 FAD-dependent oxidoreductase compare
BWI76_RS19845 +0.8 2.2 phosphatase compare
BWI76_RS15940 +0.8 0.9 DMSO reductase maturation protein DsmD compare
BWI76_RS11515 +0.7 1.0 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS01240 +0.7 4.7 phospholipase A compare
BWI76_RS03595 +0.7 1.5 ethanolamine utilization protein EutM compare
BWI76_RS18655 +0.7 3.1 chaperone FimC, periplasmic compare
BWI76_RS23325 +0.7 2.0 hypothetical protein compare
BWI76_RS18005 +0.7 2.7 hypothetical protein compare
BWI76_RS18135 +0.7 2.4 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS13685 +0.7 1.7 IclR family transcriptional regulator compare
BWI76_RS05950 +0.7 1.2 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS06080 +0.7 2.0 taurine dioxygenase compare
BWI76_RS16895 +0.7 0.6 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS02810 +0.7 2.0 sugar ABC transporter permease YjfF compare
BWI76_RS11370 +0.7 1.3 iron-dicitrate transporter subunit FecD compare
BWI76_RS07730 +0.7 0.5 iron-enterobactin transporter membrane protein compare
BWI76_RS17765 +0.7 1.9 hypothetical protein compare
BWI76_RS20025 +0.7 2.3 HAMP domain-containing histidine kinase compare
BWI76_RS12515 +0.7 1.9 protease compare
BWI76_RS10725 +0.7 1.9 hypothetical protein compare
BWI76_RS13175 +0.7 1.9 NodT family RND efflux system outer membrane lipoprotein compare
BWI76_RS16160 +0.7 1.5 LysR family transcriptional regulator compare
BWI76_RS04095 +0.7 1.8 dUMP phosphatase compare
BWI76_RS24035 +0.7 1.7 hypothetical protein compare
BWI76_RS25980 +0.7 1.4 hypothetical protein compare
BWI76_RS00290 +0.7 3.6 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS11790 +0.7 1.6 acyl-CoA thioesterase compare
BWI76_RS06785 +0.7 2.3 DNA-binding transcriptional repressor AcrR compare
BWI76_RS24720 +0.7 1.3 hypothetical protein compare
BWI76_RS04315 +0.7 3.2 Na+/H+ antiporter NhaA compare
BWI76_RS23875 +0.7 2.6 glycine cleavage system protein H compare
BWI76_RS04840 +0.7 2.4 prepilin peptidase-dependent pilin compare
BWI76_RS16080 +0.7 2.8 LysR family transcriptional regulator compare
BWI76_RS20795 +0.7 1.0 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS07595 +0.7 1.2 putative oxidoreductase compare
BWI76_RS16220 +0.7 1.1 hypothetical protein compare
BWI76_RS11755 +0.7 1.9 catalase HPII compare
BWI76_RS01015 +0.7 2.0 nicotinamide riboside transporter PnuC compare
BWI76_RS11750 +0.7 0.8 chitooligosaccharide deacetylase compare
BWI76_RS04210 +0.7 1.7 hypothetical protein compare
BWI76_RS09420 +0.7 1.1 hypothetical protein compare
BWI76_RS04515 +0.7 0.8 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS06895 +0.7 2.9 biopolymer transporter ExbB compare
BWI76_RS00475 +0.6 4.2 sulfurtransferase FdhD compare
BWI76_RS01065 +0.6 1.2 ATP-dependent RNA helicase RhlB compare
BWI76_RS25115 +0.6 2.7 argininosuccinate synthase compare
BWI76_RS15980 +0.6 1.5 lysine transporter LysE compare
BWI76_RS03015 +0.6 1.9 RNase E inhibitor protein compare
BWI76_RS14350 +0.6 2.3 hypothetical protein compare
BWI76_RS14410 +0.6 1.4 hypothetical protein compare
BWI76_RS08250 +0.6 2.7 tricarballylate utilization protein B compare
BWI76_RS12580 +0.6 1.8 oxidoreductase compare
BWI76_RS10530 +0.6 1.7 GntR family transcriptional regulator with compare
BWI76_RS21945 +0.6 1.2 LysR family transcriptional regulator compare
BWI76_RS09565 +0.6 2.7 hybrid-cluster NAD(P)-dependent oxidoreductase compare
BWI76_RS18065 +0.6 1.0 DNA polymerase III subunit theta compare
BWI76_RS12910 +0.6 1.7 3,4-dihydroxyphenylacetate 2,3-dioxygenase compare
BWI76_RS11260 +0.6 1.2 hypothetical protein compare
BWI76_RS07735 +0.6 2.9 MFS transporter compare
BWI76_RS26635 +0.6 2.3 hypothetical protein compare
BWI76_RS08795 +0.6 2.7 DNA-binding response regulator compare
BWI76_RS11880 +0.6 2.0 23S rRNA pseudouridylate synthase B compare
BWI76_RS18565 +0.6 1.6 pemk protein compare
BWI76_RS13240 +0.6 1.0 hypothetical protein compare
BWI76_RS15090 +0.6 1.9 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS06335 +0.6 1.7 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS26505 +0.6 1.7 nickel ABC transporter permease subunit NikB compare
BWI76_RS20340 +0.6 0.9 histidine ABC transporter substrate-binding protein HisJ compare
BWI76_RS08905 +0.6 2.4 transketolase compare
BWI76_RS08820 +0.6 2.2 molybdenum cofactor biosynthesis protein compare
BWI76_RS08350 +0.6 0.9 carboxylase compare
BWI76_RS00330 +0.6 3.6 molybdenum cofactor guanylyltransferase compare
BWI76_RS13290 +0.6 3.0 protocatechuate 3,4-dioxygenase subunit beta compare
BWI76_RS20800 +0.6 1.2 carboxysome shell protein compare
BWI76_RS16015 +0.6 2.1 pheromone autoinducer 2 transporter compare
BWI76_RS15440 +0.6 1.7 hypothetical protein compare
BWI76_RS06420 +0.6 2.5 oxidoreductase compare
BWI76_RS14930 +0.6 1.3 hypothetical protein compare
BWI76_RS06190 +0.6 0.9 hypothetical protein compare
BWI76_RS13540 +0.6 1.9 ABC transporter substrate-binding protein compare
BWI76_RS20520 +0.6 3.6 indolepyruvate decarboxylase compare
BWI76_RS13880 +0.6 1.5 lysine transporter LysE compare
BWI76_RS15035 +0.6 0.9 metal ABC transporter permease compare
BWI76_RS20790 +0.6 1.8 aldehyde dehydrogenase compare
BWI76_RS21375 +0.6 0.5 autonomous glycyl radical cofactor GrcA compare
BWI76_RS14965 +0.6 2.6 AraC family transcriptional regulator compare
BWI76_RS13505 +0.6 2.7 putative receptor compare
BWI76_RS15100 +0.6 3.4 phenazine biosynthesis protein PhzE compare
BWI76_RS26980 +0.6 1.6 cold-shock protein compare
BWI76_RS13815 +0.6 1.7 ABC transporter compare
BWI76_RS19405 +0.6 1.1 LysR family transcriptional regulator compare
BWI76_RS18305 +0.6 2.2 dihydrodipicolinate synthase family protein compare
BWI76_RS15350 +0.6 0.6 hypothetical protein compare
BWI76_RS08315 +0.6 1.7 K+-transporting ATPase subunit B compare
BWI76_RS21170 +0.6 2.4 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ compare
BWI76_RS08310 +0.6 1.3 potassium-transporting ATPase subunit C compare
BWI76_RS14825 +0.6 1.2 dienelactone hydrolase family protein compare
BWI76_RS06800 +0.6 1.1 DUF2496 domain-containing protein compare
BWI76_RS23140 +0.6 1.0 carboxysome shell protein compare
BWI76_RS18125 +0.6 2.5 murein DD-endopeptidase MepM compare
BWI76_RS20910 +0.6 2.3 glycine cleavage system transcriptional repressor compare
BWI76_RS24745 +0.6 1.8 membrane protein compare
BWI76_RS14045 +0.6 2.2 oxidoreductase compare
BWI76_RS11735 +0.6 1.1 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS14610 +0.6 2.2 putative hydrolase compare
BWI76_RS11335 +0.6 0.9 tautomerase compare
BWI76_RS13945 +0.6 1.9 lysine exporter protein LysE/YggA compare
BWI76_RS01885 +0.6 0.8 CsbD family protein compare
BWI76_RS08280 +0.6 1.4 acyl-CoA esterase compare
BWI76_RS25935 +0.6 1.6 glutathione-regulated potassium-efflux system ancillary protein KefG compare
BWI76_RS13735 +0.6 3.3 sulfate ABC transporter substrate-binding protein compare
BWI76_RS10760 +0.5 2.3 nitroreductase family protein compare
BWI76_RS16475 +0.5 1.9 alkene reductase compare
BWI76_RS10570 +0.5 2.5 cysteine ABC transporter substrate-binding protein compare
BWI76_RS20675 +0.5 1.9 GMP synthase compare
BWI76_RS15955 +0.5 1.0 transcriptional regulator compare
BWI76_RS15245 +0.5 2.5 dihydrodipicolinate synthase family protein compare
BWI76_RS23460 +0.5 1.8 hypothetical protein compare
BWI76_RS17770 +0.5 0.6 isomerase/hydrolase compare
BWI76_RS10420 +0.5 2.3 monooxygenase compare
BWI76_RS10835 +0.5 0.6 hypothetical protein compare
BWI76_RS11950 +0.5 2.1 phosphatidylglycerophosphatase B compare
BWI76_RS12665 +0.5 0.9 hypothetical protein compare
BWI76_RS21380 +0.5 1.5 uracil-DNA glycosylase compare
BWI76_RS02630 +0.5 1.8 PTS ascorbate transporter subunit IIA compare
BWI76_RS16115 +0.5 1.8 fumarate hydratase compare
BWI76_RS16055 +0.5 2.5 malonate decarboxylase subunit epsilon compare
BWI76_RS20890 +0.5 1.4 neutral zinc metallopeptidase compare
BWI76_RS10945 +0.5 1.5 SecY/SecA suppressor protein compare
BWI76_RS26115 +0.5 2.5 hypothetical protein compare
BWI76_RS20960 +0.5 1.5 ROK family protein compare


Specific Phenotypes

For 2 genes in this experiment

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL across organisms