Experiment set14IT059 for Klebsiella michiganensis M5al

Compare to:

LB 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS01115 -4.7 -2.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS26460 -4.6 -3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26455 -4.5 -1.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS26470 -4.3 -3.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS23265 -4.2 -1.8 hypothetical protein compare
BWI76_RS08520 -4.1 -2.1 colicin transporter TolQ compare
BWI76_RS05120 -3.7 -7.5 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS05015 -3.6 -2.1 transcriptional regulator compare
BWI76_RS21070 -3.6 -1.8 outer membrane protein assembly factor BamB compare
BWI76_RS08530 -3.4 -1.5 protein TolA compare
BWI76_RS25335 -3.4 -1.8 stringent starvation protein A compare
BWI76_RS00875 -3.3 -5.0 DNA-binding transcriptional regulator FabR compare
BWI76_RS10745 -3.3 -1.0 hypothetical protein compare
BWI76_RS08040 -3.2 -1.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS11440 -3.2 -1.4 hypothetical protein compare
BWI76_RS05835 -3.2 -1.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS27425 -3.0 -1.5 DNA-directed RNA polymerase subunit omega compare
BWI76_RS01385 -3.0 -2.1 potassium transporter compare
BWI76_RS01135 -3.0 -5.9 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS15195 -3.0 -1.8 DUF4186 domain-containing protein compare
BWI76_RS26440 -3.0 -1.3 hypothetical protein compare
BWI76_RS21075 -3.0 -1.5 membrane protein compare
BWI76_RS20750 -2.8 -0.8 carboxysome structural protein EutK compare
BWI76_RS25070 -2.8 -1.4 hypothetical protein compare
BWI76_RS19770 -2.8 -1.6 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS01800 -2.7 -1.9 glucose-6-phosphate isomerase compare
BWI76_RS15825 -2.7 -1.1 hypothetical protein compare
BWI76_RS16965 -2.7 -2.1 murein lipoprotein compare
BWI76_RS08535 -2.7 -1.3 translocation protein TolB compare
BWI76_RS21580 -2.7 -1.3 SsrA-binding protein compare
BWI76_RS08210 -2.6 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS23920 -2.6 -2.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS13755 -2.6 -1.9 hypothetical protein compare
BWI76_RS26620 -2.6 -0.7 Fe-S biogenesis protein NfuA compare
BWI76_RS09645 -2.5 -0.7 thioredoxin-disulfide reductase compare
BWI76_RS05260 -2.5 -1.3 chaperone compare
BWI76_RS16955 -2.5 -1.0 hypothetical protein compare
BWI76_RS26390 -2.4 -5.4 cell division protein FtsX compare
BWI76_RS22475 -2.4 -3.9 heme ABC transporter ATP-binding protein compare
BWI76_RS21370 -2.4 -1.0 ATP-dependent RNA helicase SrmB compare
BWI76_RS21450 -2.3 -2.0 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS11155 -2.3 -2.3 penicillin-binding protein activator LpoB compare
BWI76_RS09970 -2.3 -0.8 porin OmpA compare
BWI76_RS04645 -2.3 -3.0 3-dehydroquinase compare
BWI76_RS16425 -2.2 -3.4 hypothetical protein compare
BWI76_RS26730 -2.2 -6.3 inner membrane protein YhjD compare
BWI76_RS16920 -2.1 -1.2 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS25920 -2.1 -1.4 peptidylprolyl isomerase compare
BWI76_RS20900 -2.1 -0.8 outer membrane protein assembly factor BamC compare
BWI76_RS11610 -2.1 -1.9 glutamate dehydrogenase compare
BWI76_RS01080 -2.1 -7.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS15535 -2.1 -2.5 hypothetical protein compare
BWI76_RS22755 -2.1 -3.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS01125 -2.1 -3.8 4-alpha-L-fucosyltransferase compare
BWI76_RS19330 -2.1 -0.9 HAD family hydrolase compare
BWI76_RS13160 -2.1 -1.6 azoreductase compare
BWI76_RS14065 -2.1 -1.8 hypothetical protein compare
BWI76_RS21350 -2.1 -2.7 anti-RNA polymerase sigma factor SigE compare
BWI76_RS24580 -2.1 -3.6 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS07465 -2.0 -1.1 TetR family transcriptional regulator compare
BWI76_RS09640 -2.0 -2.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS09760 -2.0 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS19905 -2.0 -3.6 OmpK36 porin compare
BWI76_RS02530 -2.0 -1.3 tRNA dimethylallyltransferase compare
BWI76_RS16200 -2.0 -1.4 NAD(P) transhydrogenase subunit beta compare
BWI76_RS17980 -2.0 -3.7 RNA chaperone ProQ compare
BWI76_RS19840 -2.0 -0.6 hypothetical protein compare
BWI76_RS02580 -1.9 -2.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS26670 -1.9 -6.0 two-component sensor histidine kinase compare
BWI76_RS09190 -1.9 -1.3 hypothetical protein compare
BWI76_RS05840 -1.9 -3.0 glutamate 5-kinase compare
BWI76_RS25870 -1.9 -1.2 elongation factor Tu compare
BWI76_RS10990 -1.9 -2.8 dihydroorotase compare
BWI76_RS26665 -1.9 -2.4 DNA-binding response regulator compare
BWI76_RS06535 -1.8 -2.4 endopeptidase La compare
BWI76_RS22935 -1.8 -2.0 L-fucose mutarotase compare
BWI76_RS09255 -1.8 -2.7 hypothetical protein compare
BWI76_RS04160 -1.8 -2.4 phosphoserine phosphatase compare
BWI76_RS00180 -1.8 -0.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS22805 -1.8 -7.3 GTP diphosphokinase compare
BWI76_RS10935 -1.8 -3.2 glucan biosynthesis glucosyltransferase H compare
BWI76_RS22420 -1.8 -1.9 LacI family transcriptional regulator compare
BWI76_RS17975 -1.8 -2.8 tail-specific protease compare
BWI76_RS15360 -1.7 -2.5 hypothetical protein compare
BWI76_RS09335 -1.7 -1.0 baseplate assembly protein W compare
BWI76_RS23365 -1.7 -3.0 LysR family transcriptional regulator compare
BWI76_RS01110 -1.7 -3.1 TDP-fucosamine acetyltransferase compare
BWI76_RS15110 -1.7 -2.6 putative excinuclease ABC subunit A compare
BWI76_RS01095 -1.7 -1.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS01090 -1.7 -5.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS13590 -1.7 -1.7 hypothetical protein compare
BWI76_RS09825 -1.6 -2.1 envelope biogenesis factor ElyC compare
BWI76_RS04525 -1.6 -1.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS01220 -1.6 -4.0 DNA-dependent helicase II compare
BWI76_RS21565 -1.6 -0.8 outer membrane protein assembly factor BamE compare
BWI76_RS27440 -1.6 -1.1 DNA helicase RecG compare
BWI76_RS19035 -1.6 -5.2 dTDP-rhamnosyl transferase compare
BWI76_RS17860 -1.5 -1.4 YoaH family protein compare
BWI76_RS26095 -1.5 -0.6 shikimate kinase compare
BWI76_RS00355 -1.5 -0.7 DNA polymerase I compare
BWI76_RS27390 -1.5 -4.3 ribonuclease PH compare
BWI76_RS04705 -1.5 -3.6 DNA-binding transcriptional regulator FruR compare
BWI76_RS24605 -1.5 -3.4 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS18955 -1.5 -2.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS11250 -1.5 -1.6 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS15760 -1.5 -1.5 hypothetical protein compare
BWI76_RS21310 -1.5 -1.0 DNA repair protein RecO compare
BWI76_RS23490 -1.5 -3.8 fimbrial protein compare
BWI76_RS12270 -1.5 -2.6 hypothetical protein compare
BWI76_RS07185 -1.4 -0.9 hypothetical protein compare
BWI76_RS09670 -1.4 -1.8 recombination factor protein RarA compare
BWI76_RS11275 -1.4 -4.5 sensor protein PhoQ compare
BWI76_RS18695 -1.4 -2.8 GntR family transcriptional regulator compare
BWI76_RS01105 -1.4 -2.7 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS12265 -1.4 -3.6 hypothetical protein compare
BWI76_RS27305 -1.4 -5.7 glycosyl transferase compare
BWI76_RS18815 -1.4 -1.7 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS05450 -1.4 -0.5 ribonuclease HI compare
BWI76_RS14300 -1.4 -1.9 hypothetical protein compare
BWI76_RS15115 -1.4 -1.3 MFS transporter compare
BWI76_RS19615 -1.4 -2.7 vancomycin high temperature exclusion protein compare
BWI76_RS13785 -1.4 -1.3 ABC transporter permease compare
BWI76_RS24400 -1.4 -2.2 outer membrane channel protein TolC compare
BWI76_RS26175 -1.4 -2.3 DeoR/GlpR family transcriptional regulator compare
BWI76_RS17310 -1.4 -3.1 AsnC family transcriptional regulator compare
BWI76_RS05655 -1.4 -2.6 hypothetical protein compare
BWI76_RS08020 -1.4 -2.9 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS17720 -1.4 -0.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS20720 -1.4 -1.2 hypothetical protein compare
BWI76_RS19685 -1.4 -3.0 lysine transporter compare
BWI76_RS23495 -1.3 -4.8 hypothetical protein compare
BWI76_RS08385 -1.3 -2.0 citrate (Si)-synthase compare
BWI76_RS09740 -1.3 -4.3 formate transporter FocA compare
BWI76_RS09730 -1.3 -0.7 pyruvate formate lyase 1-activating protein compare
BWI76_RS14320 -1.3 -1.4 hypothetical protein compare
BWI76_RS12400 -1.3 -3.5 TetR family transcriptional regulator compare
BWI76_RS09910 -1.3 -7.6 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS01185 -1.3 -0.8 adenylate cyclase compare
BWI76_RS13820 -1.3 -1.1 hypothetical protein compare
BWI76_RS22760 -1.3 -3.1 sulfite reductase subunit beta compare
BWI76_RS00345 -1.2 -2.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS08405 -1.2 -1.9 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS07785 -1.2 -1.2 transcriptional regulator compare
BWI76_RS11580 -1.2 -1.7 L-asparaginase 1 compare
BWI76_RS08360 -1.2 -2.2 LamB/YcsF family protein compare
BWI76_RS15715 -1.2 -2.2 putative ninG protein compare
BWI76_RS16230 -1.2 -1.1 dihydromonapterin reductase compare
BWI76_RS06520 -1.2 -2.4 trigger factor compare
BWI76_RS14305 -1.2 -2.1 metallophosphoesterase compare
BWI76_RS24595 -1.2 -1.8 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS08395 -1.2 -1.2 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS21660 -1.2 -1.0 antirestriction protein compare
BWI76_RS22690 -1.2 -1.7 adenylyl-sulfate kinase compare
BWI76_RS00400 -1.2 -0.6 glutamine synthetase compare
BWI76_RS16195 -1.2 -1.4 hypothetical protein compare
BWI76_RS26395 -1.2 -2.5 cell division protein FtsE compare
BWI76_RS11980 -1.2 -1.0 DeoR family transcriptional regulator compare
BWI76_RS26425 -1.2 -5.2 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS18000 -1.2 -3.5 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
BWI76_RS08430 -1.2 -2.4 succinate--CoA ligase subunit alpha compare
BWI76_RS25065 -1.1 -1.7 polyribonucleotide nucleotidyltransferase compare
BWI76_RS14755 -1.1 -1.9 SIS domain-containing protein compare
BWI76_RS11300 -1.1 -0.6 cupin compare
BWI76_RS20135 -1.1 -2.3 NADH-quinone oxidoreductase subunit M compare
BWI76_RS05515 -1.1 -1.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit F compare
BWI76_RS26075 -1.1 -0.8 DNA adenine methylase compare
BWI76_RS23360 -1.1 -0.9 diaminopimelate decarboxylase compare
BWI76_RS16500 -1.1 -1.5 superoxide dismutase [Fe] compare
BWI76_RS18025 -1.1 -2.5 spore coat U domain-containing protein compare
BWI76_RS20730 -1.1 -1.1 hypothetical protein compare
BWI76_RS19900 -1.1 -2.2 FAD:protein FMN transferase compare
BWI76_RS18110 -1.1 -3.3 transcriptional regulator HexR compare
BWI76_RS15560 -1.1 -5.0 hypothetical protein compare
BWI76_RS01200 -1.1 -0.7 diaminopimelate epimerase compare
BWI76_RS10930 -1.1 -3.9 glucan biosynthesis protein G compare
BWI76_RS01870 -1.1 -2.0 diacylglycerol kinase compare
BWI76_RS23480 -1.1 -7.8 EAL domain-containing protein compare
BWI76_RS12240 -1.1 -3.8 terminase small subunit compare
BWI76_RS06205 -1.1 -2.5 recombination-associated protein RdgC compare
BWI76_RS03660 -1.1 -2.1 hypothetical protein compare
BWI76_RS15635 -1.1 -2.0 hypothetical protein compare
BWI76_RS25300 -1.1 -1.7 hybrid sensor histidine kinase/response regulator compare
BWI76_RS24100 -1.1 -1.3 YggS family pyridoxal phosphate enzyme compare
BWI76_RS20475 -1.1 -2.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS22940 -1.1 -1.1 DNA-binding transcriptional activator FucR compare
BWI76_RS05205 -1.1 -2.5 type I methionyl aminopeptidase compare
BWI76_RS20355 -1.1 -1.4 colicin V production protein compare
BWI76_RS16950 -1.1 -1.8 TetR family transcriptional regulator compare
BWI76_RS09455 -1.1 -1.6 YbjN domain-containing protein compare
BWI76_RS02340 -1.1 -3.2 membrane protein FxsA compare
BWI76_RS15840 -1.1 -2.6 prophage protein compare
BWI76_RS10815 -1.0 -2.1 iron permease compare
BWI76_RS25960 -1.0 -2.0 NUDIX hydrolase compare
BWI76_RS16150 -1.0 -1.7 IclR family transcriptional regulator compare
BWI76_RS22765 -1.0 -4.3 sulfite reductase subunit alpha compare
BWI76_RS24850 -1.0 -2.6 DeoR family transcriptional regulator compare
BWI76_RS15990 -1.0 -2.6 serine protease compare
BWI76_RS23830 -1.0 -2.9 hypothetical protein compare
BWI76_RS27385 -1.0 -3.4 orotate phosphoribosyltransferase compare
BWI76_RS20245 -1.0 -1.8 transketolase subunit B compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms