Experiment set14IT050 for Shewanella oneidensis MR-1

Compare to:

LB anaerobic; ground control

200 most detrimental genes:

  gene name fitness t score description  
SO0217 tufB +2.8 2.1 translation elongation factor Tu (NCBI ptt file) compare
SO2347 gapA-3 +2.4 8.1 glyceraldehyde 3-phosphate dehydrogenase (NCBI ptt file) compare
SO2851 +2.1 6.1 histidinol phosphatase domain protein (NCBI ptt file) compare
SOA0171 +2.0 6.8 hypothetical protein (NCBI ptt file) compare
SO4322 +2.0 7.4 conserved hypothetical protein (NCBI ptt file) compare
SO2644 ppsA +1.9 7.7 phosphoenolpyruvate synthase (NCBI ptt file) compare
SO2935 +1.9 6.6 oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) compare
SO_A0009 +1.9 4.9 hypothetical protein (NCBI) compare
SOA0004 +1.8 8.5 type II DNA modification methyltransferase (NCBI ptt file) compare
SO0290 +1.8 1.8 hypothetical protein (NCBI ptt file) compare
SOA0003 +1.8 16.3 type II restriction endonuclease, putative (NCBI ptt file) compare
SO0610 petC +1.8 2.2 ubiquinol-cytochrome c reductase, cytochrome c1 (NCBI ptt file) compare
SO3901 icc +1.8 5.8 lacZ expression regulator (NCBI ptt file) compare
SOA0172 +1.7 6.8 site-specific recombinase, resolvase family (NCBI ptt file) compare
SO3185 +1.7 13.5 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO3182 +1.7 8.5 acetyltransferase, GNAT family (NCBI ptt file) compare
SO_t008 tRNA-Thr-1 +1.7 1.2 tRNA-Thr (RefSeq) compare
SOA0002 +1.7 15.9 type II restriction-modification system activator, putative (NCBI ptt file) compare
SO0577 +1.7 4.7 sensory box histidine kinase/response regulator (NCBI ptt file) compare
SO1105 nqrC-2 +1.6 2.3 NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file) compare
SO2365 +1.6 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO_A0006 +1.6 7.6 ParA family protein (NCBI) compare
SOA0012 umuC +1.6 8.2 umuC protein (NCBI ptt file) compare
SOA0013 umuD +1.5 4.9 umuD protein (VIMSS) compare
SO0423 pdhR +1.5 5.5 pyruvate dehydrogenase complex repressor (NCBI ptt file) compare
SO3184 +1.5 13.0 conserved hypothetical protein (NCBI ptt file) compare
SO_A0007 +1.5 6.8 hypothetical protein (NCBI) compare
SOA0008 +1.5 6.4 hypothetical protein (NCBI ptt file) compare
SO3183 +1.5 9.1 perosamine synthetase-related protein (NCBI ptt file) compare
SOA0011 +1.4 5.7 conserved hypothetical protein (NCBI ptt file) compare
SO3188 rfbB +1.4 9.9 dTDP-glucose 4,6-dehydratase (NCBI ptt file) compare
SO0051 +1.4 1.1 hypothetical protein (NCBI ptt file) compare
SO3851 +1.4 1.6 hypothetical protein (NCBI ptt file) compare
SO2101 +1.4 2.0 lipoprotein, putative (NCBI ptt file) compare
SO3119 +1.4 1.9 hypothetical protein (NCBI ptt file) compare
SO2746 +1.3 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO2623 aat +1.3 1.3 leucyl/phenylalanyl-tRNA--protein transferase (NCBI ptt file) compare
SO3325 +1.3 1.9 nrfJ-related protein (NCBI ptt file) compare
SO2333 +1.3 2.9 hydrolase, alpha/beta fold family (NCBI ptt file) compare
SO3193 +1.3 9.6 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO1141 carA +1.3 4.7 carbamoyl-phosphate synthase, small subunit (NCBI ptt file) compare
SOA0010 +1.3 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO3203 +1.3 1.5 CheW domain protein (NCBI ptt file) compare
SO2665 +1.3 1.6 hypothetical protein (NCBI ptt file) compare
SO3174 +1.3 8.5 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO3558 +1.3 3.2 hypothetical protein (NCBI ptt file) compare
SO1998 +1.2 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO2490 +1.2 1.9 transcriptional regulator, RpiR family (NCBI ptt file) compare
SO4566 +1.2 2.3 hypothetical protein (NCBI ptt file) compare
SO3829 +1.2 3.0 conserved hypothetical protein (NCBI ptt file) compare
SO3173 +1.2 6.5 UDP-galactose 4-epimerase, putative (NCBI ptt file) compare
SO3191 +1.2 5.5 chain length determinant protein (NCBI ptt file) compare
SO1213 +1.2 2.7 hydrolase, TatD family (NCBI ptt file) compare
SO4737 +1.2 7.5 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO0424 aceE +1.1 5.9 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (NCBI ptt file) compare
SO1103 nqrA-2 +1.1 3.1 NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file) compare
SO4323 +1.1 4.9 GGDEF domain protein (NCBI ptt file) compare
SO3158 +1.1 3.0 polysaccharide synthesis-related protein (NCBI ptt file) compare
SO1292 folK-2 +1.1 1.8 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (NCBI ptt file) compare
SO1683 +1.1 2.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase IvdG (EC:1.1.1.178) (from data) compare
SO3277 +1.1 3.5 transcriptional regulator, TetR family (NCBI ptt file) compare
SO3177 +1.1 7.3 formyl transferase domain protein (NCBI ptt file) compare
SO0428 +1.1 9.4 conserved hypothetical protein (NCBI ptt file) compare
SO0868 +1.1 3.3 hypothetical protein (NCBI ptt file) compare
SO3194 +1.1 5.5 transcriptional activator rfaH, putative (NCBI ptt file) compare
SO2649 cysB +1.1 1.6 cys regulon transcriptional activator (NCBI ptt file) compare
SO3176 +1.1 8.6 glycosyl transferase, group 1 family protein (NCBI ptt file) compare
SO2954 +1.1 1.3 hypothetical protein (NCBI ptt file) compare
SO2350 aspC-1 +1.1 3.5 aspartate aminotransferase (NCBI ptt file) compare
SO1301 pyrB +1.0 3.9 aspartate carbamoyltransferase (NCBI ptt file) compare
SOA0014 +1.0 0.7 hypothetical protein (NCBI ptt file) compare
SO1298.3 +1.0 1.9 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO2364 ccoN +1.0 3.4 cytochrome c oxidase, cbb3-type, subunit I (NCBI ptt file) compare
SO4494.1 +1.0 1.8 hypothetical protein (NCBI ptt file) compare
SO0425 aceF +1.0 4.3 pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase (NCBI ptt file) compare
SO_2605 +1.0 3.3 no description compare
SO2637 +1.0 1.0 hypothetical protein (NCBI ptt file) compare
SO0393 fis +1.0 0.8 DNA-binding protein Fis (NCBI ptt file) compare
SO1104 nqrB-2 +1.0 2.1 NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file) compare
SO1582 +1.0 3.0 transcriptional regulator, MarR family (NCBI ptt file) compare
SO3171 +1.0 4.6 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO1333 +1.0 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO3975 +0.9 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO3714 +0.9 6.2 sugar-binding protein, putative (NCBI ptt file) compare
SO3251 cheR-2 +0.9 4.2 chemotaxis protein methyltransferase CheR (NCBI ptt file) compare
SO3237 +0.9 1.8 flagellin (NCBI ptt file) compare
SO0921 +0.9 1.4 hypothetical protein (NCBI ptt file) compare
SO_t078 tRNA-Arg-9 +0.9 1.7 tRNA-Arg (RefSeq) compare
SO1142 carB +0.9 6.5 carbamoyl-phosphate synthase, large subunit (NCBI ptt file) compare
SO1686 +0.9 2.0 prolyl oligopeptidase family protein (NCBI ptt file) compare
SO1128 +0.9 1.5 hypothetical protein (NCBI ptt file) compare
SO0264 scyA +0.9 1.1 cytochrome c (NCBI ptt file) compare
SO0943 +0.9 4.6 sensory box protein, putative (NCBI ptt file) compare
SO4013 +0.9 2.1 hypothetical protein (NCBI ptt file) compare
SO3002 +0.9 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO1663 napF +0.9 1.8 ferredoxin-type protein NapF (NCBI ptt file) compare
SO1107 nqrE-2 +0.9 1.2 NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE (NCBI ptt file) compare
SO2997 +0.9 1.3 hypothetical protein (NCBI ptt file) compare
SO3902 +0.9 5.1 conserved hypothetical protein (NCBI ptt file) compare
SO3190 +0.9 4.8 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO_A0174 +0.9 2.1 hypothetical protein (NCBI) compare
SO1343 rseA +0.8 0.8 sigma-E factor negative regulatory protein (NCBI ptt file) compare
SO2971 +0.8 1.4 conserved hypothetical protein (NCBI ptt file) compare
SOA0005 +0.8 3.5 hypothetical protein (NCBI ptt file) compare
SO2995 +0.8 2.4 hypothetical protein (NCBI ptt file) compare
SO1124 +0.8 2.0 conserved hypothetical protein TIGR00011 (NCBI ptt file) compare
SO_3141 +0.8 1.1 no description compare
SO2205 +0.8 1.3 hypothetical protein (NCBI ptt file) compare
SO0474 +0.8 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO1746 +0.8 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO2656 +0.8 0.8 hypothetical protein (NCBI ptt file) compare
SO4094 cafA +0.8 1.8 ribonuclease G (NCBI ptt file) compare
SO0208.1 +0.8 0.8 putative transposase (NCBI ptt file) compare
SO0613 pabA +0.8 2.1 para-aminobenzoate synthase glutamine amidotransferase, component II (NCBI ptt file) compare
SO2972 +0.8 4.1 hypothetical protein (NCBI ptt file) compare
SO0635 ppiC-1 +0.8 1.3 peptidyl-prolyl cis-trans isomerase C (NCBI ptt file) compare
SO3755 +0.8 2.9 hypothetical protein (NCBI ptt file) compare
SO2363 ccoO +0.8 1.2 cytochrome c oxidase, cbb3-type, subunit II (NCBI ptt file) compare
SO1648 +0.8 0.9 cold shock domain family protein (NCBI ptt file) compare
SO4255 pyrE +0.8 3.2 orotate phosphoribosyltransferase (NCBI ptt file) compare
SO1208 +0.8 3.1 GGDEF domain protein (NCBI ptt file) compare
SO2398 pyrF +0.8 1.8 orotidine 5`-phosphate decarboxylase (NCBI ptt file) compare
SO2537 +0.8 4.9 sodium/hydrogen exchanger family protein (NCBI ptt file) compare
SO3293 guaB +0.8 3.5 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
SO2525.1 +0.8 1.7 hypothetical protein (NCBI ptt file) compare
SO0472.1 +0.8 1.5 hypothetical mitomycin resistance protein (NCBI ptt file) compare
SO1703 +0.8 1.2 transcriptional regulator, TetR family (NCBI ptt file) compare
SO0508.1 +0.7 1.5 hypothetical Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit (NCBI ptt file) compare
SO2268 hscA +0.7 1.3 chaperone protein HscA (NCBI ptt file) compare
SO3124 +0.7 2.2 tyrosine-specific protein phosphatase, putative (NCBI ptt file) compare
SO1687 +0.7 2.5 transcriptional regulator, MerR family (NCBI ptt file) compare
SO3501 +0.7 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO4728 +0.7 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO2700 +0.7 2.6 prophage MuSo2, baseplate assembly protein V (NCBI ptt file) compare
SO2838 +0.7 0.7 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) compare
SO3728 cobA +0.7 1.5 uroporphyrin-III C-methyltransferase (NCBI ptt file) compare
SO3434 pcm +0.7 2.0 protein-L-isoaspartate O-methyltransferase (NCBI ptt file) compare
SO0001 mioC +0.7 0.3 mioC protein (NCBI ptt file) compare
SO0342 +0.7 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO2281 +0.7 3.0 alkaline phosphatase (NCBI ptt file) compare
SO4711 +0.7 3.9 HD domain protein (NCBI ptt file) compare
SO2975 +0.7 3.5 hypothetical protein (NCBI ptt file) compare
SO1583 +0.7 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO3345 +0.7 2.4 translation initiation factor, putative (NCBI ptt file) compare
SO2291 +0.7 0.8 hypothetical protein (NCBI ptt file) compare
SO1852 +0.7 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO2298 +0.7 0.7 hypothetical protein (NCBI ptt file) compare
SO3943 degS +0.7 1.6 protease DegS (NCBI ptt file) compare
SO3000 +0.7 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO2868 +0.7 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO1112 bfr1 +0.7 1.4 bacterioferritin subunit 1 (NCBI ptt file) compare
SO2991 +0.7 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO1878 +0.7 1.4 glycine cleavage system transcriptional repressor, putative (NCBI ptt file) compare
SO0662 +0.7 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO1975 +0.7 2.0 Zinc carboxypeptidase-related protein (NCBI ptt file) compare
SO1063 slyX +0.7 0.8 slyX protein (NCBI ptt file) compare
SO2182 +0.7 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO3175 asnB-2 +0.7 5.4 asparagine synthetase, glutamine-hydrolyzing (NCBI ptt file) compare
SO3180 +0.7 5.2 glycosyl transferase, group 2 family protein (NCBI ptt file) compare
SO0202 +0.7 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO0026 +0.7 2.1 transcriptional regulator, ArsR family (NCBI ptt file) compare
SO2970 +0.7 2.6 hypothetical protein (NCBI ptt file) compare
SO3645 +0.6 1.5 hypothetical protein (NCBI ptt file) compare
SO0924 +0.6 3.0 hypothetical protein (NCBI ptt file) compare
SO_1054 +0.6 1.2 no description compare
SO4229 +0.6 1.2 hypothetical protein (NCBI ptt file) compare
SO1190 +0.6 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO3392 +0.6 2.1 oxidoreductase, FMN-binding (NCBI ptt file) compare
SO2809 +0.6 1.3 RepA domain protein (NCBI ptt file) compare
SO2583 +0.6 2.9 hypothetical protein (NCBI ptt file) compare
SO2604.1 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO4705 +0.6 2.3 transcriptional regulator, putative (NCBI ptt file) compare
SO2510 +0.6 0.6 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO4663 +0.6 2.4 hypothetical protein (NCBI ptt file) compare
SO4321 +0.6 2.1 OmpA family protein (NCBI ptt file) compare
SO3695 pyrC +0.6 1.8 dihydroorotase, homodimeric type (NCBI ptt file) compare
SO2806 +0.6 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3157 +0.6 2.8 lipoprotein, putative (NCBI ptt file) compare
SO0883 +0.6 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO4007 +0.6 1.6 predicted chromosome partitioning protein (with smc-like SO4008) (from data) compare
SO2311 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
SO2677 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO2955 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO0318 +0.6 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO1271 +0.6 2.6 polyamine ABC transporter, ATP-binding protein (NCBI ptt file) compare
SO3097.4 +0.6 1.0 hypothetical sodium/proline symporter (NCBI ptt file) compare
SO2357 +0.6 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO3888 +0.6 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO2436 +0.6 1.6 methyltransferase, putative (NCBI ptt file) compare
SO0339 +0.6 2.5 hypothetical transcriptional antiterminator (NCBI ptt file) compare
SO4233 leuD +0.6 2.2 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) compare
SO3832 +0.6 0.7 hemK family protein (NCBI ptt file) compare
SO_2783 +0.6 1.2 no description compare
SOA0104 +0.6 1.5 hypothetical protein (NCBI ptt file) compare
SO3001 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
SO1883 +0.6 2.9 acetyltransferase, GNAT family (NCBI ptt file) compare
SO1762 +0.6 1.8 transcriptional regulator, AraC/XylS family (NCBI ptt file) compare
SO1407 +0.6 1.8 mercuric transport periplasmic protein MerP, putative (NCBI ptt file) compare
SO3668 +0.6 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO3988 arcA +0.6 0.5 aerobic respiration control protein ArcA (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Shewanella oneidensis MR-1 in ground_control experiments

For ground_control Sodium D,L-Lactate across organisms