Experiment set14IT028 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Betaine (N); with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -5.0 -3.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28390 -4.8 -7.3 methionine biosynthesis protein MetW compare
PFLU_RS28385 -4.7 -10.4 homoserine O-acetyltransferase compare
PFLU_RS02050 -4.5 -14.3 NAD(P)-binding protein compare
PFLU_RS28535 -4.5 -12.6 dihydroxy-acid dehydratase compare
PFLU_RS02045 -4.4 -20.4 glutamate synthase large subunit compare
PFLU_RS27370 -4.4 -9.4 anthranilate phosphoribosyltransferase compare
PFLU_RS20510 -4.3 -11.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20580 -4.3 -8.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS01605 -4.2 -2.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS20540 -4.2 -7.6 phosphoribosylanthranilate isomerase compare
PFLU_RS27365 -4.2 -9.4 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS01685 -4.2 -2.9 nitrogen regulation protein NR(I) compare
PFLU_RS04465 -4.2 -9.4 ATP phosphoribosyltransferase compare
PFLU_RS28645 -4.1 -16.0 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS24765 -4.0 -19.4 2-isopropylmalate synthase compare
PFLU_RS00180 -4.0 -3.9 tryptophan synthase subunit beta compare
PFLU_RS25640 -3.9 -11.8 ketol-acid reductoisomerase compare
PFLU_RS20565 -3.9 -12.6 3-isopropylmalate dehydrogenase compare
PFLU_RS04470 -3.9 -9.3 histidinol dehydrogenase compare
PFLU_RS01610 -3.8 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28165 -3.8 -10.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS00175 -3.7 -4.5 tryptophan synthase subunit alpha compare
PFLU_RS27810 -3.7 -16.8 sarcosine oxidase subunit alpha compare
PFLU_RS01690 -3.7 -8.6 nitrogen regulation protein NR(II) compare
PFLU_RS02590 -3.7 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01620 -3.7 -6.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS27820 -3.6 -10.8 sarcosine oxidase subunit beta compare
PFLU_RS28695 -3.6 -9.5 phosphoglycerate dehydrogenase compare
PFLU_RS27815 -3.4 -8.2 sarcosine oxidase subunit delta compare
PFLU_RS01900 -3.4 -6.9 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS06265 -3.4 -18.1 [protein-PII] uridylyltransferase compare
PFLU_RS27870 -3.3 -15.3 electron transfer flavoprotein subunit beta compare
PFLU_RS27875 -3.2 -11.0 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS14440 -3.1 -1.9 hypothetical protein compare
PFLU_RS24025 -3.1 -12.6 quinolinate synthase NadA compare
PFLU_RS27865 -3.1 -12.5 glycine-betaine demethylase subunit GbcA compare
PFLU_RS03970 -3.0 -11.1 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25360 -3.0 -7.9 glutamate 5-kinase compare
PFLU_RS20515 -3.0 -4.5 amidophosphoribosyltransferase compare
PFLU_RS27885 -3.0 -13.7 dimethylglycine demethylation protein DgcA compare
PFLU_RS27825 -2.9 -12.9 serine hydroxymethyltransferase compare
PFLU_RS12980 -2.9 -7.2 nitrite/sulfite reductase compare
PFLU_RS13010 -2.9 -4.4 Fe-S biogenesis protein NfuA compare
PFLU_RS12975 -2.9 -4.7 DUF934 domain-containing protein compare
PFLU_RS29515 -2.8 -11.5 RidA family protein compare
PFLU_RS22095 -2.7 -15.1 GTP diphosphokinase compare
PFLU_RS27880 -2.7 -9.4 dimethylglycine demethylation protein DgcB compare
PFLU_RS27890 -2.7 -10.5 hypothetical protein compare
PFLU_RS09055 -2.7 -2.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS22105 -2.6 -6.0 cysteine synthase CysM compare
PFLU_RS27805 -2.6 -3.1 sarcosine oxidase subunit gamma family protein compare
PFLU_RS27895 -2.6 -9.2 membrane dipeptidase compare
PFLU_RS18505 -2.5 -7.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25715 -2.5 -7.6 RNA polymerase-binding protein DksA compare
PFLU_RS02700 -2.5 -4.4 ammonia-dependent NAD(+) synthetase compare
PFLU_RS27860 -2.5 -7.9 glycine-betaine demethylase subunit GbcB compare
PFLU_RS26250 -2.4 -13.8 ferredoxin--NADP reductase compare
PFLU_RS07225 -2.4 -14.6 L-aspartate oxidase compare
PFLU_RS23305 -2.3 -10.7 arginine N-succinyltransferase compare
PFLU_RS27955 -2.3 -7.5 GlxA family transcriptional regulator compare
PFLU_RS28655 -2.3 -11.6 HAD family hydrolase compare
PFLU_RS01665 -2.3 -2.7 glutaredoxin 3 compare
PFLU_RS23920 -2.2 -3.0 septation protein A compare
PFLU_RS22740 -2.2 -2.6 phosphoadenylyl-sulfate reductase compare
PFLU_RS03240 -2.2 -10.5 copper-translocating P-type ATPase compare
PFLU_RS25645 -2.1 -3.1 acetolactate synthase small subunit compare
PFLU_RS01625 -2.1 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS23070 -2.0 -1.7 50S ribosomal protein L32 compare
PFLU_RS31805 -2.0 -1.8 hypothetical protein compare
PFLU_RS29880 -2.0 -11.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS21985 -2.0 -4.1 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS25740 -2.0 -4.7 polynucleotide adenylyltransferase PcnB compare
PFLU_RS18530 -2.0 -2.9 DNA translocase FtsK compare
PFLU_RS28965 -1.9 -8.9 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS29875 -1.9 -11.6 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS29885 -1.9 -9.1 LysR family transcriptional regulator compare
PFLU_RS01895 -1.9 -5.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS02980 -1.9 -1.9 precorrin-8X methylmutase compare
PFLU_RS30165 -1.9 -7.2 ParA family protein compare
PFLU_RS29755 -1.9 -10.6 phosphate ABC transporter ATP-binding protein compare
PFLU_RS15755 -1.8 -2.4 type II secretion system protein M compare
PFLU_RS01955 -1.8 -6.5 DUF971 domain-containing protein compare
PFLU_RS27650 -1.7 -7.4 biotin synthase BioB compare
PFLU_RS24330 -1.7 -4.4 phosphogluconate dehydratase compare
PFLU_RS01960 -1.7 -1.6 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS22725 -1.7 -2.8 transcriptional regulator compare
PFLU_RS13540 -1.7 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS08650 -1.6 -1.9 heme exporter protein CcmB compare
PFLU_RS08410 -1.6 -6.3 HTH-type transcriptional regulator CysB compare
PFLU_RS24860 -1.6 -1.5 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS02790 -1.6 -1.8 TetR family transcriptional regulator compare
PFLU_RS23310 -1.6 -8.0 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS04835 -1.6 -1.3 hypothetical protein compare
PFLU_RS08670 -1.6 -3.4 heme lyase CcmF/NrfE family subunit compare
PFLU_RS31310 -1.6 -2.1 phage tail protein compare
PFLU_RS01765 -1.6 -6.5 histidine utilization repressor compare
PFLU_RS08735 -1.6 -1.6 histidine phosphatase family protein compare
PFLU_RS08660 -1.6 -1.5 heme exporter protein CcmD compare
PFLU_RS29550 -1.5 -3.7 ATP-dependent DNA helicase RecG compare
PFLU_RS27475 -1.5 -1.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS13580 -1.5 -3.9 ribonucleotide-diphosphate reductase subunit beta compare
PFLU_RS19420 -1.5 -5.4 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS07910 -1.5 -2.1 type 1 fimbrial protein compare
PFLU_RS08125 -1.5 -2.4 integration host factor subunit beta compare
PFLU_RS27375 -1.5 -4.7 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS25760 -1.5 -2.7 glucose-6-phosphate isomerase compare
PFLU_RS02215 -1.5 -2.2 hypothetical protein compare
PFLU_RS24125 -1.5 -2.6 cold-shock protein compare
PFLU_RS05690 -1.5 -1.7 Grx4 family monothiol glutaredoxin compare
PFLU_RS17060 -1.4 -2.2 monooxygenase compare
PFLU_RS30555 -1.4 -1.8 hypothetical protein compare
PFLU_RS19170 -1.4 -3.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS31635 -1.4 -2.7 IS21 family transposase compare
PFLU_RS01390 -1.4 -5.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS21425 -1.3 -3.6 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS03645 -1.3 -7.2 tetratricopeptide repeat protein compare
PFLU_RS26515 -1.3 -9.4 AMP nucleosidase compare
PFLU_RS26640 -1.3 -6.9 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS04505 -1.3 -3.5 hypothetical protein compare
PFLU_RS31215 -1.3 -1.9 hypothetical protein compare
PFLU_RS19910 -1.3 -1.6 hypothetical protein compare
PFLU_RS29765 -1.3 -9.7 ABC transporter permease subunit compare
PFLU_RS23725 -1.3 -5.0 glucose-6-phosphate dehydrogenase compare
PFLU_RS17580 -1.3 -1.5 repressor LexA compare
PFLU_RS07275 -1.3 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS18620 -1.2 -1.4 NADH-quinone oxidoreductase subunit B compare
PFLU_RS28820 -1.2 -2.0 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS16390 -1.2 -1.4 DUF411 domain-containing protein compare
PFLU_RS09305 -1.2 -8.5 hypothetical protein compare
PFLU_RS15760 -1.2 -2.8 general secretion pathway protein GspL compare
PFLU_RS28310 -1.2 -1.3 response regulator compare
PFLU_RS25735 -1.2 -4.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS24160 -1.2 -4.1 HAMP domain-containing protein compare
PFLU_RS02205 -1.2 -5.3 potassium/proton antiporter compare
PFLU_RS31630 -1.2 -2.5 hypothetical protein compare
PFLU_RS04440 -1.2 -5.6 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS22015 -1.2 -6.1 cobalamin biosynthesis protein compare
PFLU_RS07785 -1.1 -5.9 VacJ family lipoprotein compare
PFLU_RS31435 -1.1 -3.9 ABC transporter ATP-binding protein compare
PFLU_RS05020 -1.1 -1.5 DUF1120 domain-containing protein compare
PFLU_RS19160 -1.1 -5.5 endopeptidase La compare
PFLU_RS29300 -1.1 -6.3 ammonium transporter compare
PFLU_RS21315 -1.1 -3.5 GTP cyclohydrolase I FolE compare
PFLU_RS04445 -1.1 -4.0 ABC transporter substrate-binding protein compare
PFLU_RS24205 -1.1 -1.5 DNA binding protein compare
PFLU_RS20520 -1.1 -5.0 colicin V production protein CvpA compare
PFLU_RS02975 -1.1 -4.4 precorrin-3B synthase compare
PFLU_RS24560 -1.1 -5.2 site-specific tyrosine recombinase XerD compare
PFLU_RS08160 -1.1 -3.9 sugar transferase compare
PFLU_RS14760 -1.1 -2.8 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS11060 -1.1 -3.3 DUF3592 domain-containing protein compare
PFLU_RS21495 -1.1 -1.6 TlpA family protein disulfide reductase compare
PFLU_RS02275 -1.1 -1.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
PFLU_RS18675 -1.1 -1.0 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS29490 -1.1 -4.9 ribonuclease PH compare
PFLU_RS02365 -1.1 -5.7 glycosyltransferase compare
PFLU_RS22025 -1.1 -7.2 cobyrinate a,c-diamide synthase compare
PFLU_RS01615 -1.1 -2.7 DUF2164 domain-containing protein compare
PFLU_RS17545 -1.1 -1.0 DUF465 domain-containing protein compare
PFLU_RS07685 -1.1 -2.7 transcriptional repressor LexA compare
PFLU_RS02985 -1.1 -6.1 precorrin-2 C(20)-methyltransferase compare
PFLU_RS22520 -1.1 -1.7 GntR family transcriptional regulator compare
PFLU_RS22000 -1.1 -4.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS29480 -1.1 -6.2 exodeoxyribonuclease III compare
PFLU_RS02565 -1.1 -2.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS29290 -1.1 -2.9 hypothetical protein compare
PFLU_RS17970 -1.0 -2.9 LysR family transcriptional regulator compare
PFLU_RS21995 -1.0 -2.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS24090 -1.0 -0.7 Holliday junction branch migration protein RuvA compare
PFLU_RS13040 -1.0 -6.5 cobaltochelatase subunit CobN compare
PFLU_RS13045 -1.0 -3.8 AAA domain-containing protein compare
PFLU_RS12755 -1.0 -2.8 periplasmic heavy metal sensor compare
PFLU_RS20290 -1.0 -1.2 integration host factor subunit alpha compare
PFLU_RS13945 -1.0 -1.6 hypothetical protein compare
PFLU_RS14520 -1.0 -2.2 hypothetical protein compare
PFLU_RS01645 -1.0 -5.7 S41 family peptidase compare
PFLU_RS02625 -1.0 -6.4 ribonuclease R compare
PFLU_RS05210 -1.0 -1.9 HU family DNA-binding protein compare
PFLU_RS29255 -1.0 -2.0 iron donor protein CyaY compare
PFLU_RS19165 -1.0 -2.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS31290 -1.0 -1.1 EamA family transporter compare
PFLU_RS23185 -1.0 -6.3 protein-glutamate O-methyltransferase CheR compare
PFLU_RS24085 -1.0 -0.7 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS13015 -1.0 -3.7 precorrin-4 C(11)-methyltransferase compare
PFLU_RS01005 -1.0 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS27690 -1.0 -1.5 response regulator compare
PFLU_RS17570 -1.0 -3.5 DNA polymerase Y family protein compare
PFLU_RS04430 -1.0 -3.8 ATP-binding cassette domain-containing protein compare
PFLU_RS02455 -1.0 -1.3 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS31510 -1.0 -1.4 transcriptional regulator compare
PFLU_RS20765 -0.9 -1.8 hypothetical protein compare
PFLU_RS01885 -0.9 -2.5 Sec-independent protein translocase subunit TatB compare
PFLU_RS08765 -0.9 -3.2 phosphonate C-P lyase system protein PhnH compare
PFLU_RS14550 -0.9 -3.8 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS06855 -0.9 -1.3 helix-turn-helix transcriptional regulator compare
PFLU_RS13000 -0.9 -6.4 methionine synthase compare
PFLU_RS08665 -0.9 -1.6 cytochrome c maturation protein CcmE compare
PFLU_RS04435 -0.9 -3.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS15785 -0.9 -1.9 type II secretion system protein GspH compare


Specific Phenotypes

For 1 genes in this experiment

For no stress control D-Glucose in Pseudomonas fluorescens SBW25-INTG

For no stress control D-Glucose across organisms