Experiment set14H34 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic, Glucose Nitrate sample1

200 most important genes:

  gene name fitness t score description  
Psest_2591 -5.6 -3.9 3-isopropylmalate dehydratase, large subunit compare
Psest_1897 -5.6 -22.0 ABC-type sugar transport systems, permease components compare
Psest_1473 -5.5 -9.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3480 -5.4 -4.2 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0153 -5.3 -14.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2590 -5.1 -2.4 3-isopropylmalate dehydratase, small subunit compare
Psest_0508 -5.1 -11.8 gamma-glutamyl phosphate reductase compare
Psest_2988 -5.0 -8.4 aspartate kinase, monofunctional class compare
Psest_0852 -5.0 -10.6 glucose-6-phosphate 1-dehydrogenase compare
Psest_2232 -4.9 -13.0 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_0279 -4.8 -8.1 methionine biosynthesis protein MetW compare
Psest_1898 -4.8 -18.9 ABC-type sugar transport system, permease component compare
Psest_3650 -4.8 -11.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1895 -4.5 -11.9 Signal transduction histidine kinase compare
Psest_3298 -4.5 -14.7 histidinol dehydrogenase compare
Psest_0855 -4.5 -10.1 NAD-dependent aldehyde dehydrogenases compare
Psest_3866 -4.4 -21.3 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3864 -4.3 -18.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3299 -4.2 -17.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0155 -4.1 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3647 -4.1 -4.0 Indole-3-glycerol phosphate synthase compare
Psest_0280 -4.0 -17.3 homoserine O-acetyltransferase compare
Psest_2578 -4.0 -17.2 O-succinylhomoserine sulfhydrylase compare
Psest_0850 -3.9 -12.5 glucokinase, proteobacterial type compare
Psest_3384 -3.9 -12.6 glutamate 5-kinase compare
Psest_0853 -3.9 -7.4 6-phosphogluconolactonase compare
Psest_3943 -3.8 -7.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0152 -3.8 -10.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_2579 -3.8 -6.7 amidophosphoribosyltransferase compare
Psest_3648 -3.7 -8.2 anthranilate phosphoribosyltransferase compare
Psest_1899 -3.7 -6.4 ABC-type sugar transport systems, ATPase components compare
Psest_0849 -3.7 -15.0 6-phosphogluconate dehydratase compare
Psest_1805 -3.7 -4.3 integration host factor, beta subunit compare
Psest_2584 -3.6 -6.0 Phosphoribosylanthranilate isomerase compare
Psest_0326 -3.6 -15.7 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3170 -3.6 -9.1 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2589 -3.6 -14.2 3-isopropylmalate dehydrogenase compare
Psest_1814 -3.6 -20.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3479 -3.5 -7.1 molybdenum cofactor synthesis domain compare
Psest_0325 -3.4 -10.7 Putative threonine efflux protein compare
Psest_1994 -3.3 -6.7 Amidases related to nicotinamidase compare
Psest_1961 -3.2 -15.4 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_1896 -3.2 -4.0 ABC-type sugar transport system, periplasmic component compare
Psest_0687 -3.2 -10.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3483 -3.1 -9.5 respiratory nitrate reductase, gamma subunit compare
Psest_3484 -3.1 -8.1 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1772 -3.0 -6.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0313 -3.0 -6.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1496 -3.0 -2.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_3488 -2.9 -4.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1115 -2.9 -5.2 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1013 -2.9 -3.4 phosphoribosylamine--glycine ligase compare
Psest_3485 -2.9 -17.4 nitrate reductase, beta subunit compare
Psest_3486 -2.9 -20.4 respiratory nitrate reductase, alpha subunit compare
Psest_3944 -2.8 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3818 -2.7 -11.2 endoribonuclease L-PSP, putative compare
Psest_3159 -2.7 -6.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0327 -2.7 -6.2 Transcriptional regulator compare
Psest_2067 -2.7 -2.5 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1295 -2.7 -8.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2329 -2.7 -17.9 Transcriptional regulator compare
Psest_3720 -2.6 -18.5 penicillin-binding protein, 1A family compare
Psest_0999 -2.5 -3.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3190 -2.5 -8.5 pyruvate kinase compare
Psest_3301 -2.4 -5.7 Predicted transcriptional regulator, BolA superfamily compare
Psest_1657 -2.4 -2.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2234 -2.2 -13.7 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1656 -2.2 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3168 -2.2 -3.2 Molybdopterin converting factor, large subunit compare
Psest_2975 -2.2 -5.1 tRNA_Arg_CCT compare
Psest_0529 -2.2 -11.3 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2945 -2.2 -1.4 septum site-determining protein MinC compare
Psest_0958 -2.2 -5.7 Oligoketide cyclase/lipid transport protein compare
Psest_1474 -2.1 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_2304 -2.1 -2.7 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1511 -2.1 -5.8 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3489 -2.1 -14.0 hypothetical protein compare
Psest_3766 -2.0 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_3649 -2.0 -9.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1663 -2.0 -4.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0718 -2.0 -3.7 nicotinate-nucleotide pyrophosphorylase compare
Psest_0466 -2.0 -3.8 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3862 -1.9 -12.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0062 -1.9 -3.0 tryptophan synthase, alpha subunit compare
Psest_1655 -1.7 -3.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0063 -1.7 -3.0 tryptophan synthase, beta subunit compare
Psest_3490 -1.7 -5.0 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3487 -1.7 -8.1 Nitrate/nitrite transporter compare
Psest_3843 -1.7 -8.4 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1813 -1.7 -8.4 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1660 -1.6 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_1625 -1.6 -5.5 hypothetical protein compare
Psest_1974 -1.6 -3.8 integration host factor, alpha subunit compare
Psest_0257 -1.6 -3.2 Predicted Zn-dependent peptidases compare
Psest_1509 -1.6 -8.8 quinolinate synthetase complex, A subunit compare
Psest_4191 -1.6 -2.0 Transcriptional regulator compare
Psest_3100 -1.5 -1.8 RNA polymerase sigma factor RpoE compare
Psest_1837 -1.5 -7.6 Endoglucanase compare
Psest_2585 -1.5 -1.7 pseudouridylate synthase I compare
Psest_0836 -1.5 -8.5 Collagenase and related proteases compare
Psest_0993 -1.5 -7.6 Glucose-6-phosphate isomerase compare
Psest_1661 -1.5 -1.0 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_4088 -1.5 -4.7 Transcriptional regulators compare
Psest_0835 -1.5 -11.2 Collagenase and related proteases compare
Psest_2083 -1.4 -4.9 Putative sterol carrier protein compare
Psest_1000 -1.4 -8.2 PAS domain S-box compare
Psest_0837 -1.4 -5.3 Putative lipid carrier protein compare
Psest_1532 -1.4 -3.1 DNA recombination-dependent growth factor C compare
Psest_3297 -1.4 -9.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1640 -1.4 -8.9 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0459 -1.3 -7.8 Predicted carbamoyl transferase, NodU family compare
Psest_1037 -1.3 -3.3 acetolactate synthase, small subunit compare
Psest_0393 -1.3 -7.9 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3317 -1.2 -4.0 Phosphotransferase System HPr (HPr) Family compare
Psest_2507 -1.2 -10.0 Flagellin and related hook-associated proteins compare
Psest_1659 -1.1 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2810 -1.1 -4.2 5'/3'-nucleotidase SurE compare
Psest_0725 -1.1 -1.6 Negative regulator of beta-lactamase expression compare
Psest_2325 -1.1 -6.2 alpha-L-glutamate ligase-related protein compare
Psest_3045 -1.1 -3.0 Cold shock proteins compare
Psest_0457 -1.1 -3.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_1822 -1.0 -5.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_4098 -1.0 -2.6 Superfamily I DNA and RNA helicases compare
Psest_0334 -1.0 -3.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1809 -1.0 -7.1 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_2809 -1.0 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2324 -1.0 -8.4 hypothetical protein compare
Psest_1819 -1.0 -8.1 Nucleoside-diphosphate-sugar epimerases compare
Psest_1242 -1.0 -2.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1679 -1.0 -1.5 ribonuclease, Rne/Rng family compare
Psest_3042 -1.0 -1.6 Nitrate reductase cytochrome c-type subunit compare
Psest_1231 -1.0 -5.7 Na+/H+ antiporter NhaD and related arsenite permeases compare
Psest_3000 -0.9 -5.2 molybdate ABC transporter, permease protein compare
Psest_2999 -0.9 -4.3 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_2490 -0.9 -6.1 succinyl-CoA synthetase, alpha subunit compare
Psest_1812 -0.9 -5.9 pseudaminic acid CMP-transferase compare
Psest_3998 -0.9 -4.3 glutamate--cysteine ligase compare
Psest_2066 -0.9 -1.7 ABC-type uncharacterized transport system, permease component compare
Psest_3927 -0.9 -3.4 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0192 -0.9 -4.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3001 -0.9 -4.2 molybdenum ABC transporter, ATP-binding protein compare
Psest_1818 -0.8 -5.7 GDP-mannose 4,6-dehydratase compare
Psest_1824 -0.8 -1.8 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0442 -0.8 -1.7 ATPases of the AAA+ class compare
Psest_1472 -0.8 -5.0 Protein of unknown function (DUF3108). compare
Psest_1486 -0.8 -2.8 hypothetical protein compare
Psest_0462 -0.8 -7.5 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1313 -0.8 -1.9 Uncharacterized conserved small protein compare
Psest_3031 -0.8 -1.0 hypothetical protein compare
Psest_0284 -0.7 -5.8 pyridoxal phosphate enzyme, YggS family compare
Psest_3458 -0.7 -2.5 hypothetical protein compare
Psest_2643 -0.7 -1.1 Beta-glucosidase-related glycosidases compare
Psest_0461 -0.7 -4.2 Glycosyltransferase involved in LPS biosynthesis compare
Psest_2491 -0.7 -4.3 succinyl-CoA synthetase, beta subunit compare
Psest_4350 -0.7 -2.5 Transcriptional regulators of sugar metabolism compare
Psest_2911 -0.7 -1.5 Protein of unknown function (DUF2945). compare
Psest_2150 -0.7 -1.4 DNA polymerase LigD, polymerase domain compare
Psest_3670 -0.7 -5.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_2285 -0.7 -1.8 ATP-dependent protease La compare
Psest_3351 -0.7 -2.4 peptide chain release factor 3 compare
Psest_3322 -0.7 -6.4 TIGR02099 family protein compare
Psest_3377 -0.7 -1.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2404 -0.7 -4.3 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases compare
Psest_1259 -0.7 -3.0 23S rRNA m2A2503 methyltransferase compare
Psest_2104 -0.7 -0.6 IscR-regulated protein YhgI compare
Psest_0998 -0.7 -1.4 poly(A) polymerase compare
Psest_2110 -0.7 -2.4 hypothetical protein compare
Psest_2561 -0.6 -1.1 hypothetical protein compare
Psest_3419 -0.6 -3.9 Predicted transcriptional regulators compare
Psest_2646 -0.6 -1.3 SOS regulatory protein LexA compare
Psest_3178 -0.6 -2.1 formyltetrahydrofolate deformylase compare
Psest_3044 -0.6 -3.0 deoxycytidine triphosphate deaminase compare
Psest_0292 -0.6 -1.6 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3719 -0.6 -5.0 type IV pilus assembly protein PilM compare
Psest_1947 -0.6 -0.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3767 -0.6 -2.2 tyrosine recombinase XerC compare
Psest_3881 -0.6 -1.4 hypothetical protein compare
Psest_0487 -0.6 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_1815 -0.6 -4.9 pseudaminic acid synthase compare
Psest_3745 -0.6 -2.4 Uncharacterized enzyme of heme biosynthesis compare
Psest_0969 -0.6 -0.9 transcription elongation factor GreA compare
Psest_1056 -0.6 -1.8 2-isopropylmalate synthase, bacterial type compare
Psest_2136 -0.6 -4.0 Predicted homoserine dehydrogenase compare
Psest_0848 -0.6 -2.0 hypothetical protein compare
Psest_1692 -0.6 -4.5 conserved hypothetical protein, YceG family compare
Psest_2719 -0.6 -0.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1012 -0.6 -2.1 Signal transduction histidine kinase compare
Psest_1752 -0.6 -1.7 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1765 -0.6 -3.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3988 -0.6 -4.0 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1725 -0.6 -3.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2958 -0.6 -5.0 flagellar hook-associated protein 3 compare
Psest_3321 -0.6 -3.3 Predicted amidohydrolase compare
Psest_3664 -0.6 -0.7 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2651 -0.6 -1.1 DNA topoisomerase I, bacterial compare
Psest_2333 -0.6 -0.8 Protein of unknown function (DUF3359). compare
Psest_1249 -0.6 -2.6 serine O-acetyltransferase compare
Psest_4003 -0.6 -2.1 TIGR00153 family protein compare
Psest_2872 -0.5 -1.1 protein RecA compare
Psest_0087 -0.5 -2.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments

For carbon source D-Glucose across organisms