Experiment set14H30 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic, 1 nM Mo, 500 nM W sample1

200 most important genes:

  gene name fitness t score description  
Psest_3479 -6.0 -8.3 molybdenum cofactor synthesis domain compare
Psest_3480 -5.0 -4.9 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1115 -4.7 -5.6 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3170 -4.5 -8.6 molybdenum cofactor biosynthesis protein MoaC compare
Psest_0508 -4.1 -11.8 gamma-glutamyl phosphate reductase compare
Psest_2999 -4.0 -7.7 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_2988 -3.9 -10.1 aspartate kinase, monofunctional class compare
Psest_2234 -3.9 -15.2 oxygen-independent coproporphyrinogen III oxidase compare
Psest_3486 -3.8 -23.2 respiratory nitrate reductase, alpha subunit compare
Psest_3000 -3.6 -12.3 molybdate ABC transporter, permease protein compare
Psest_3485 -3.6 -16.8 nitrate reductase, beta subunit compare
Psest_3301 -3.5 -3.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_3483 -3.5 -9.0 respiratory nitrate reductase, gamma subunit compare
Psest_3484 -3.5 -9.0 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_2579 -3.4 -6.5 amidophosphoribosyltransferase compare
Psest_3384 -3.2 -11.7 glutamate 5-kinase compare
Psest_1961 -3.2 -12.5 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_3168 -2.9 -3.1 Molybdopterin converting factor, large subunit compare
Psest_1473 -2.8 -8.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1013 -2.8 -3.3 phosphoribosylamine--glycine ligase compare
Psest_0837 -2.7 -4.8 Putative lipid carrier protein compare
Psest_0828 -2.7 -8.2 Nitric oxide reductase activation protein compare
Psest_3001 -2.7 -7.7 molybdenum ABC transporter, ATP-binding protein compare
Psest_0826 -2.7 -9.5 Cytochrome c compare
Psest_3490 -2.6 -6.8 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0814 -2.4 -3.8 MoxR-like ATPases compare
Psest_0827 -2.3 -15.1 Nitric oxide reductase large subunit compare
Psest_3489 -2.3 -12.3 hypothetical protein compare
Psest_3159 -2.2 -7.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0836 -2.1 -9.6 Collagenase and related proteases compare
Psest_1656 -2.1 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3843 -2.1 -10.2 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3720 -2.1 -16.6 penicillin-binding protein, 1A family compare
Psest_1295 -2.1 -7.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0835 -1.9 -13.4 Collagenase and related proteases compare
Psest_3647 -1.9 -4.7 Indole-3-glycerol phosphate synthase compare
Psest_3488 -1.9 -4.4 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2067 -1.8 -2.0 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0062 -1.7 -2.3 tryptophan synthase, alpha subunit compare
Psest_0822 -1.7 -5.7 Transcriptional regulators compare
Psest_1655 -1.7 -3.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0817 -1.6 -9.9 Ethylbenzene dehydrogenase. compare
Psest_1659 -1.6 -2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_1474 -1.6 -1.5 phosphoribosylaminoimidazole synthetase compare
Psest_3270 -1.6 -2.9 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0821 -1.6 -11.1 Cytochrome D1 heme domain. compare
Psest_3487 -1.5 -7.2 Nitrate/nitrite transporter compare
Psest_3816 -1.5 -1.7 DNA-directed RNA polymerase, omega subunit compare
Psest_0954 -1.5 -6.3 Fe-S oxidoreductase compare
Psest_3322 -1.4 -12.6 TIGR02099 family protein compare
Psest_0823 -1.4 -3.5 Transcriptional regulators compare
Psest_0063 -1.4 -2.3 tryptophan synthase, beta subunit compare
Psest_2304 -1.4 -2.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1837 -1.3 -7.4 Endoglucanase compare
Psest_0958 -1.3 -4.5 Oligoketide cyclase/lipid transport protein compare
Psest_1511 -1.3 -3.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1657 -1.3 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0313 -1.3 -4.4 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3458 -1.3 -3.9 hypothetical protein compare
Psest_0155 -1.3 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0830 -1.2 -8.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0810 -1.2 -5.9 uroporphyrin-III C-methyltransferase compare
Psest_0953 -1.2 -6.7 iron-sulfur cluster-binding protein compare
Psest_0952 -1.2 -2.8 Uncharacterized conserved protein compare
Psest_0811 -1.2 -8.4 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_1661 -1.2 -1.1 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0257 -1.2 -2.6 Predicted Zn-dependent peptidases compare
Psest_3339 -1.2 -4.7 Signal transduction histidine kinase compare
Psest_1625 -1.1 -3.7 hypothetical protein compare
Psest_1532 -1.1 -2.5 DNA recombination-dependent growth factor C compare
Psest_3650 -1.1 -7.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_4191 -1.1 -1.5 Transcriptional regulator compare
Psest_0687 -1.1 -5.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1012 -1.1 -3.2 Signal transduction histidine kinase compare
Psest_3648 -1.1 -4.9 anthranilate phosphoribosyltransferase compare
Psest_0820 -1.1 -4.4 hypothetical protein compare
Psest_0843 -1.1 -5.3 hypothetical protein compare
Psest_1660 -1.0 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_3226 -1.0 -1.7 Predicted membrane protein compare
Psest_4103 -1.0 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_0442 -1.0 -1.6 ATPases of the AAA+ class compare
Psest_2578 -1.0 -7.5 O-succinylhomoserine sulfhydrylase compare
Psest_0575 -1.0 -1.5 HrpA-like helicases compare
Psest_3092 -1.0 -1.6 ribonuclease III, bacterial compare
Psest_3323 -1.0 -4.4 ribonuclease, Rne/Rng family compare
Psest_1818 -1.0 -6.9 GDP-mannose 4,6-dehydratase compare
Psest_0794 -1.0 -8.4 parallel beta-helix repeat (two copies) compare
Psest_0815 -1.0 -7.9 Cytochrome c, mono- and diheme variants compare
Psest_0279 -0.9 -4.7 methionine biosynthesis protein MetW compare
Psest_3298 -0.9 -6.1 histidinol dehydrogenase compare
Psest_0797 -0.9 -6.2 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_1822 -0.9 -5.1 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1663 -0.9 -2.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0280 -0.9 -7.0 homoserine O-acetyltransferase compare
Psest_0191 -0.9 -0.8 PAS domain S-box compare
Psest_2584 -0.9 -3.2 Phosphoribosylanthranilate isomerase compare
Psest_3299 -0.9 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0846 -0.9 -2.1 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_3571 -0.9 -5.7 Outer membrane protein W compare
Psest_2104 -0.9 -0.8 IscR-regulated protein YhgI compare
Psest_3100 -0.9 -1.7 RNA polymerase sigma factor RpoE compare
Psest_1809 -0.9 -6.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0959 -0.9 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0955 -0.8 -4.1 D,L-lactate:H+ symporter (from data) compare
Psest_0795 -0.8 -3.4 ABC-type multidrug transport system, ATPase component compare
Psest_1824 -0.8 -2.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_1496 -0.8 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_1082 -0.8 -2.1 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0152 -0.8 -4.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_2110 -0.8 -2.4 hypothetical protein compare
Psest_2590 -0.8 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_3864 -0.8 -6.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_4098 -0.8 -2.1 Superfamily I DNA and RNA helicases compare
Psest_1292 -0.8 -3.8 monothiol glutaredoxin, Grx4 family compare
Psest_1058 -0.8 -3.1 ribosomal-protein-alanine acetyltransferase compare
Psest_4243 -0.8 -2.0 type VI secretion lipoprotein, VC_A0113 family compare
Psest_3766 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0309 -0.8 -0.8 RND family efflux transporter, MFP subunit compare
Psest_3998 -0.8 -3.6 glutamate--cysteine ligase compare
Psest_0793 -0.7 -6.4 Nitrous oxide reductase compare
Psest_0310 -0.7 -1.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_2613 -0.7 -1.7 hypothetical protein compare
Psest_4298 -0.7 -1.1 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0792 -0.7 -6.3 Regulator of nitric oxide reductase transcription compare
Psest_3518 -0.7 -1.5 Transcriptional regulators compare
Psest_2648 -0.7 -1.1 hypothetical protein compare
Psest_0951 -0.7 -5.0 FAD/FMN-containing dehydrogenases compare
Psest_2525 -0.7 -2.8 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_0844 -0.7 -1.9 High-affinity Fe2+/Pb2+ permease compare
Psest_2809 -0.7 -2.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3850 -0.7 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0153 -0.7 -4.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3129 -0.7 -0.9 tyrosine recombinase XerD compare
Psest_1022 -0.7 -4.0 Thiol:disulfide interchange protein compare
Psest_1947 -0.7 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3031 -0.7 -0.9 hypothetical protein compare
Psest_3866 -0.7 -5.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3117 -0.7 -1.5 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0796 -0.7 -2.5 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3944 -0.7 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1677 -0.7 -1.7 Protein-tyrosine-phosphatase compare
Psest_4310 -0.6 -1.6 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_2325 -0.6 -4.3 alpha-L-glutamate ligase-related protein compare
Psest_0738 -0.6 -4.0 copper-(or silver)-translocating P-type ATPase compare
Psest_2136 -0.6 -4.7 Predicted homoserine dehydrogenase compare
Psest_1259 -0.6 -2.6 23S rRNA m2A2503 methyltransferase compare
Psest_3745 -0.6 -2.0 Uncharacterized enzyme of heme biosynthesis compare
Psest_2511 -0.6 -3.2 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_2037 -0.6 -2.8 uroporphyrin-III C-methyltransferase compare
Psest_2637 -0.6 -1.4 putative methyltransferase, YaeB/AF_0241 family compare
Psest_0355 -0.6 -1.3 Glycine cleavage system regulatory protein compare
Psest_2324 -0.6 -5.0 hypothetical protein compare
Psest_0708 -0.6 -1.2 outer membrane assembly lipoprotein YfiO compare
Psest_3419 -0.6 -3.3 Predicted transcriptional regulators compare
Psest_0529 -0.6 -3.3 Putative Mg2+ and Co2+ transporter CorC compare
Psest_1486 -0.6 -1.8 hypothetical protein compare
Psest_3531 -0.6 -0.9 Peptidase propeptide and YPEB domain. compare
Psest_2329 -0.6 -4.7 Transcriptional regulator compare
Psest_0144 -0.6 -3.0 Fe-S cluster protector protein compare
Psest_2232 -0.6 -4.4 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1819 -0.6 -4.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_3456 -0.6 -1.5 RNA polymerase sigma factor, sigma-70 family compare
Psest_3114 -0.6 -2.6 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3904 -0.6 -1.5 hypothetical protein compare
Psest_3795 -0.6 -4.1 Glycine/D-amino acid oxidases (deaminating) compare
Psest_3788 -0.6 -1.7 xanthine phosphoribosyltransferase compare
Psest_0414 -0.6 -2.5 biotin biosynthesis protein BioC compare
Psest_3494 -0.6 -2.3 hypothetical protein compare
Psest_1029 -0.6 -2.0 Regulator of competence-specific genes compare
Psest_3399 -0.6 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1879 -0.6 -1.6 Trk-type K+ transport systems, membrane components compare
Psest_0737 -0.5 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_2333 -0.5 -0.8 Protein of unknown function (DUF3359). compare
Psest_3532 -0.5 -3.5 Peptidase propeptide and YPEB domain. compare
Psest_0799 -0.5 -2.4 Uncharacterized protein involved in response to NO compare
Psest_0697 -0.5 -1.1 ribosomal protein L9 compare
Psest_2953 -0.5 -1.5 Histone acetyltransferase compare
Psest_2183 -0.5 -2.8 Transcriptional regulator compare
Psest_2490 -0.5 -3.8 succinyl-CoA synthetase, alpha subunit compare
Psest_1149 -0.5 -1.5 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_4061 -0.5 -2.8 sulfate ABC transporter, permease protein CysT compare
Psest_4350 -0.5 -1.7 Transcriptional regulators of sugar metabolism compare
Psest_0325 -0.5 -3.3 Putative threonine efflux protein compare
Psest_0969 -0.5 -0.6 transcription elongation factor GreA compare
Psest_1804 -0.5 -0.3 Superfamily II DNA and RNA helicases compare
Psest_3113 -0.5 -0.9 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0765 -0.5 -2.5 hypothetical protein compare
Psest_0393 -0.5 -3.5 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1242 -0.5 -1.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0297 -0.5 -2.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0831 -0.5 -1.0 hypothetical protein compare
Psest_2557 -0.5 -1.2 Protein of unknown function (DUF2474). compare
Psest_3881 -0.5 -1.1 hypothetical protein compare
Psest_1163 -0.5 -2.3 diguanylate cyclase (GGDEF) domain compare
Psest_1527 -0.5 -4.2 Na+/proline symporter compare
Psest_2285 -0.5 -1.3 ATP-dependent protease La compare
Psest_2491 -0.5 -2.8 succinyl-CoA synthetase, beta subunit compare
Psest_0485 -0.5 -1.2 clan AA aspartic protease, TIGR02281 family compare
Psest_2885 -0.5 -2.0 Acyl carrier protein compare
Psest_4051 -0.5 -1.7 molybdenum-pterin binding domain compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Ammonium heptamolybdate tetrahydrate across organisms