Experiment set14H29 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic, 1 nM Mo, 500 nM W sample2

200 most important genes:

  gene name fitness t score description  
Psest_3479 -4.5 -8.5 molybdenum cofactor synthesis domain compare
Psest_3000 -4.3 -11.6 molybdate ABC transporter, permease protein compare
Psest_0508 -4.2 -11.8 gamma-glutamyl phosphate reductase compare
Psest_3170 -4.1 -7.8 molybdenum cofactor biosynthesis protein MoaC compare
Psest_2999 -4.0 -8.0 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_3484 -4.0 -8.5 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3480 -3.9 -4.6 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_3168 -3.8 -3.0 Molybdopterin converting factor, large subunit compare
Psest_1115 -3.8 -4.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3384 -3.6 -11.6 glutamate 5-kinase compare
Psest_3486 -3.5 -22.3 respiratory nitrate reductase, alpha subunit compare
Psest_3483 -3.5 -7.7 respiratory nitrate reductase, gamma subunit compare
Psest_3485 -3.5 -16.1 nitrate reductase, beta subunit compare
Psest_1473 -3.5 -8.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2234 -3.4 -14.9 oxygen-independent coproporphyrinogen III oxidase compare
Psest_1961 -3.2 -12.7 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_2988 -3.0 -8.5 aspartate kinase, monofunctional class compare
Psest_3301 -3.0 -3.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_0814 -3.0 -4.2 MoxR-like ATPases compare
Psest_2579 -2.7 -7.1 amidophosphoribosyltransferase compare
Psest_1656 -2.5 -1.7 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_0828 -2.5 -7.9 Nitric oxide reductase activation protein compare
Psest_1013 -2.4 -3.7 phosphoribosylamine--glycine ligase compare
Psest_1295 -2.4 -7.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0827 -2.3 -15.6 Nitric oxide reductase large subunit compare
Psest_3001 -2.3 -6.7 molybdenum ABC transporter, ATP-binding protein compare
Psest_0826 -2.2 -8.0 Cytochrome c compare
Psest_3490 -2.2 -4.7 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_3489 -2.2 -10.2 hypothetical protein compare
Psest_3843 -2.1 -9.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0835 -2.1 -14.9 Collagenase and related proteases compare
Psest_0313 -2.0 -6.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3720 -2.0 -14.7 penicillin-binding protein, 1A family compare
Psest_0836 -2.0 -8.8 Collagenase and related proteases compare
Psest_2001 -2.0 -1.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1474 -1.9 -1.8 phosphoribosylaminoimidazole synthetase compare
Psest_3159 -1.7 -6.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1655 -1.7 -3.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_2872 -1.6 -2.3 protein RecA compare
Psest_1999 -1.6 -1.5 pseudouridine synthase compare
Psest_0954 -1.6 -8.1 Fe-S oxidoreductase compare
Psest_0953 -1.5 -8.0 iron-sulfur cluster-binding protein compare
Psest_1663 -1.5 -3.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_0823 -1.5 -4.8 Transcriptional regulators compare
Psest_0821 -1.5 -10.3 Cytochrome D1 heme domain. compare
Psest_2304 -1.5 -2.2 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0817 -1.5 -9.4 Ethylbenzene dehydrogenase. compare
Psest_3488 -1.5 -5.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0837 -1.5 -4.2 Putative lipid carrier protein compare
Psest_2067 -1.4 -1.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3487 -1.4 -7.1 Nitrate/nitrite transporter compare
Psest_1511 -1.4 -3.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1657 -1.4 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_0737 -1.4 -1.7 Cu(I)-responsive transcriptional regulator compare
Psest_3322 -1.3 -11.3 TIGR02099 family protein compare
Psest_0687 -1.3 -6.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3766 -1.3 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1625 -1.3 -4.0 hypothetical protein compare
Psest_0796 -1.3 -4.2 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3647 -1.3 -3.6 Indole-3-glycerol phosphate synthase compare
Psest_2018 -1.3 -2.2 Uncharacterized conserved protein compare
Psest_0811 -1.3 -9.2 heme d1 biosynthesis radical SAM protein NirJ compare
Psest_0063 -1.3 -2.4 tryptophan synthase, beta subunit compare
Psest_0820 -1.3 -5.6 hypothetical protein compare
Psest_3650 -1.3 -7.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0280 -1.2 -8.8 homoserine O-acetyltransferase compare
Psest_1837 -1.2 -7.0 Endoglucanase compare
Psest_1659 -1.2 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0062 -1.2 -2.4 tryptophan synthase, alpha subunit compare
Psest_1661 -1.2 -1.1 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_0810 -1.2 -5.9 uroporphyrin-III C-methyltransferase compare
Psest_0822 -1.2 -4.2 Transcriptional regulators compare
Psest_0155 -1.2 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0952 -1.2 -2.5 Uncharacterized conserved protein compare
Psest_0442 -1.2 -1.4 ATPases of the AAA+ class compare
Psest_3298 -1.2 -7.9 histidinol dehydrogenase compare
Psest_1012 -1.2 -3.3 Signal transduction histidine kinase compare
Psest_0334 -1.1 -3.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0498 -1.1 -0.8 ribosome small subunit-dependent GTPase A compare
Psest_3226 -1.1 -1.8 Predicted membrane protein compare
Psest_0958 -1.1 -3.9 Oligoketide cyclase/lipid transport protein compare
Psest_0830 -1.1 -6.3 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_4098 -1.1 -2.5 Superfamily I DNA and RNA helicases compare
Psest_0152 -1.1 -3.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_1818 -1.1 -7.7 GDP-mannose 4,6-dehydratase compare
Psest_1242 -1.1 -2.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0846 -1.1 -2.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_4010 -1.0 -1.7 peroxiredoxin, OsmC subfamily compare
Psest_1496 -1.0 -1.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_3299 -1.0 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0815 -1.0 -7.7 Cytochrome c, mono- and diheme variants compare
Psest_3648 -1.0 -4.5 anthranilate phosphoribosyltransferase compare
Psest_1660 -1.0 -1.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0955 -1.0 -5.0 D,L-lactate:H+ symporter (from data) compare
Psest_1809 -1.0 -7.3 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0279 -1.0 -4.3 methionine biosynthesis protein MetW compare
Psest_1643 -1.0 -1.9 hypothetical protein compare
Psest_2584 -1.0 -3.0 Phosphoribosylanthranilate isomerase compare
Psest_1822 -1.0 -5.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_1292 -1.0 -4.3 monothiol glutaredoxin, Grx4 family compare
Psest_3100 -1.0 -1.6 RNA polymerase sigma factor RpoE compare
Psest_3890 -1.0 -1.2 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0257 -0.9 -2.8 Predicted Zn-dependent peptidases compare
Psest_3998 -0.9 -4.1 glutamate--cysteine ligase compare
Psest_3944 -0.9 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0794 -0.9 -8.0 parallel beta-helix repeat (two copies) compare
Psest_2578 -0.9 -5.9 O-succinylhomoserine sulfhydrylase compare
Psest_4307 -0.9 -2.1 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_2850 -0.9 -1.7 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1022 -0.9 -4.9 Thiol:disulfide interchange protein compare
Psest_2532 -0.9 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3864 -0.9 -6.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0310 -0.9 -1.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3339 -0.9 -3.4 Signal transduction histidine kinase compare
Psest_0797 -0.9 -6.2 Predicted lipoprotein involved in nitrous oxide reduction compare
Psest_0153 -0.8 -5.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_4191 -0.8 -1.3 Transcriptional regulator compare
Psest_2511 -0.8 -3.9 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_4124 -0.8 -2.4 hypothetical protein compare
Psest_2810 -0.8 -3.0 5'/3'-nucleotidase SurE compare
Psest_3129 -0.8 -1.1 tyrosine recombinase XerD compare
Psest_0795 -0.8 -2.8 ABC-type multidrug transport system, ATPase component compare
Psest_3571 -0.8 -4.9 Outer membrane protein W compare
Psest_2324 -0.7 -5.9 hypothetical protein compare
Psest_2646 -0.7 -1.7 SOS regulatory protein LexA compare
Psest_1167 -0.7 -1.3 hypothetical protein compare
Psest_2136 -0.7 -5.9 Predicted homoserine dehydrogenase compare
Psest_3943 -0.7 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0793 -0.7 -6.4 Nitrous oxide reductase compare
Psest_3323 -0.7 -3.5 ribonuclease, Rne/Rng family compare
Psest_0575 -0.7 -1.2 HrpA-like helicases compare
Psest_2945 -0.7 -0.8 septum site-determining protein MinC compare
Psest_3044 -0.7 -3.6 deoxycytidine triphosphate deaminase compare
Psest_0792 -0.7 -6.0 Regulator of nitric oxide reductase transcription compare
Psest_3927 -0.7 -2.5 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_1819 -0.7 -5.9 Nucleoside-diphosphate-sugar epimerases compare
Psest_1008 -0.7 -1.2 hypothetical protein compare
Psest_1907 -0.7 -1.5 hypothetical protein compare
Psest_3767 -0.7 -2.2 tyrosine recombinase XerC compare
Psest_0951 -0.7 -4.6 FAD/FMN-containing dehydrogenases compare
Psest_0843 -0.7 -3.5 hypothetical protein compare
Psest_0325 -0.7 -4.0 Putative threonine efflux protein compare
Psest_2589 -0.7 -4.6 3-isopropylmalate dehydrogenase compare
Psest_3317 -0.7 -2.9 Phosphotransferase System HPr (HPr) Family compare
Psest_0097 -0.7 -1.6 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0718 -0.6 -2.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_3532 -0.6 -4.0 Peptidase propeptide and YPEB domain. compare
Psest_3536 -0.6 -1.5 hypothetical protein compare
Psest_3550 -0.6 -2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1888 -0.6 -1.1 Sua5/YciO/YrdC/YwlC family protein compare
Psest_4371 -0.6 -2.2 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_3745 -0.6 -1.9 Uncharacterized enzyme of heme biosynthesis compare
Psest_2325 -0.6 -3.9 alpha-L-glutamate ligase-related protein compare
Psest_1480 -0.6 -1.4 arsenate reductase (glutaredoxin) compare
Psest_2786 -0.6 -0.9 Domain of unknown function (DUF3597). compare
Psest_1163 -0.6 -2.7 diguanylate cyclase (GGDEF) domain compare
Psest_3145 -0.6 -1.5 hypothetical protein compare
Psest_3866 -0.6 -5.0 threonine ammonia-lyase, biosynthetic, long form compare
Psest_1815 -0.6 -4.7 pseudaminic acid synthase compare
Psest_1215 -0.6 -1.6 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_2772 -0.6 -1.8 MIP family channel proteins compare
Psest_2981 -0.6 -0.7 sodium pump decarboxylases, gamma subunit compare
Psest_4350 -0.6 -2.0 Transcriptional regulators of sugar metabolism compare
Psest_1176 -0.6 -2.0 Urea transporter compare
Psest_2525 -0.6 -2.2 cytochrome c oxidase, cbb3-type, subunit II compare
Psest_2104 -0.5 -0.5 IscR-regulated protein YhgI compare
Psest_1601 -0.5 -1.6 Signal transduction histidine kinase compare
Psest_3270 -0.5 -0.9 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_1783 -0.5 -2.1 Predicted transporter component compare
Psest_3795 -0.5 -3.9 Glycine/D-amino acid oxidases (deaminating) compare
Psest_1056 -0.5 -1.1 2-isopropylmalate synthase, bacterial type compare
Psest_1824 -0.5 -1.4 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3031 -0.5 -0.7 hypothetical protein compare
Psest_2329 -0.5 -4.4 Transcriptional regulator compare
Psest_2110 -0.5 -1.8 hypothetical protein compare
Psest_1947 -0.5 -0.5 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_4126 -0.5 -1.8 Predicted peroxiredoxins compare
Psest_3247 -0.5 -1.2 Uncharacterized membrane protein compare
Psest_4363 -0.5 -2.6 ATPases involved in chromosome partitioning compare
Psest_0393 -0.5 -3.6 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3117 -0.5 -1.2 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0192 -0.5 -2.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0485 -0.5 -1.5 clan AA aspartic protease, TIGR02281 family compare
Psest_4097 -0.5 -3.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_4128 -0.5 -1.1 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2037 -0.5 -2.6 uroporphyrin-III C-methyltransferase compare
Psest_1692 -0.5 -3.2 conserved hypothetical protein, YceG family compare
Psest_0867 -0.5 -1.1 hypothetical protein compare
Psest_2150 -0.5 -1.4 DNA polymerase LigD, polymerase domain compare
Psest_3937 -0.5 -1.4 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2232 -0.5 -3.6 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3113 -0.5 -0.8 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0482 -0.5 -2.2 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_0148 -0.5 -1.0 nitrate transport ATP-binding subunits C and D compare
Psest_3013 -0.5 -1.2 cobyrinic acid a,c-diamide synthase compare
Psest_3272 -0.5 -2.6 TIGR00252 family protein compare
Psest_3700 -0.5 -1.1 hypothetical protein compare
Psest_1325 -0.5 -2.0 Molecular chaperone compare
Psest_3772 -0.5 -2.2 ammonium transporter compare
Psest_0487 -0.5 -1.7 Uncharacterized protein conserved in bacteria compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments

For metal limitation Ammonium heptamolybdate tetrahydrate across organisms