Experiment set14H27 for Pseudomonas stutzeri RCH2

Compare to:

Anaerobic, no Mo, no W, sample3

200 most important genes:

  gene name fitness t score description  
Psest_2234 -4.0 -15.6 oxygen-independent coproporphyrinogen III oxidase compare
Psest_2579 -3.6 -7.2 amidophosphoribosyltransferase compare
Psest_1473 -3.5 -10.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3301 -3.5 -5.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_3647 -3.4 -5.7 Indole-3-glycerol phosphate synthase compare
Psest_2304 -3.1 -3.1 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_0508 -2.8 -11.0 gamma-glutamyl phosphate reductase compare
Psest_1295 -2.7 -8.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1013 -2.7 -4.1 phosphoribosylamine--glycine ligase compare
Psest_1657 -2.7 -2.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1656 -2.6 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3720 -2.6 -18.6 penicillin-binding protein, 1A family compare
Psest_3384 -2.5 -10.7 glutamate 5-kinase compare
Psest_2988 -2.4 -9.9 aspartate kinase, monofunctional class compare
Psest_0062 -2.4 -2.3 tryptophan synthase, alpha subunit compare
Psest_0718 -2.2 -5.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_0953 -2.1 -9.9 iron-sulfur cluster-binding protein compare
Psest_0828 -2.0 -9.0 Nitric oxide reductase activation protein compare
Psest_0814 -1.9 -4.4 MoxR-like ATPases compare
Psest_2067 -1.9 -1.9 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0954 -1.9 -7.2 Fe-S oxidoreductase compare
Psest_3159 -1.9 -7.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3843 -1.8 -8.9 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1655 -1.8 -3.4 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0837 -1.8 -3.5 Putative lipid carrier protein compare
Psest_0952 -1.8 -2.7 Uncharacterized conserved protein compare
Psest_1837 -1.8 -9.1 Endoglucanase compare
Psest_3170 -1.7 -7.0 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1242 -1.7 -3.2 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1686 -1.5 -5.7 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1805 -1.5 -2.7 integration host factor, beta subunit compare
Psest_1999 -1.5 -1.9 pseudouridine synthase compare
Psest_1115 -1.5 -4.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3479 -1.5 -6.4 molybdenum cofactor synthesis domain compare
Psest_2491 -1.5 -7.1 succinyl-CoA synthetase, beta subunit compare
Psest_1474 -1.5 -2.2 phosphoribosylaminoimidazole synthetase compare
Psest_0826 -1.5 -9.0 Cytochrome c compare
Psest_3480 -1.4 -3.7 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0144 -1.4 -6.3 Fe-S cluster protector protein compare
Psest_3483 -1.4 -7.6 respiratory nitrate reductase, gamma subunit compare
Psest_3168 -1.4 -3.0 Molybdopterin converting factor, large subunit compare
Psest_0827 -1.4 -11.3 Nitric oxide reductase large subunit compare
Psest_2018 -1.4 -2.5 Uncharacterized conserved protein compare
Psest_2490 -1.4 -8.8 succinyl-CoA synthetase, alpha subunit compare
Psest_3650 -1.4 -9.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0836 -1.4 -7.8 Collagenase and related proteases compare
Psest_0958 -1.4 -4.8 Oligoketide cyclase/lipid transport protein compare
Psest_3850 -1.4 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1509 -1.3 -7.3 quinolinate synthetase complex, A subunit compare
Psest_1920 -1.3 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2945 -1.3 -1.2 septum site-determining protein MinC compare
Psest_0529 -1.3 -7.1 Putative Mg2+ and Co2+ transporter CorC compare
Psest_0835 -1.3 -10.5 Collagenase and related proteases compare
Psest_0063 -1.3 -2.6 tryptophan synthase, beta subunit compare
Psest_3042 -1.3 -2.2 Nitrate reductase cytochrome c-type subunit compare
Psest_3484 -1.3 -5.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_1809 -1.3 -8.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0310 -1.2 -2.5 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1625 -1.2 -3.7 hypothetical protein compare
Psest_0799 -1.2 -4.0 Uncharacterized protein involved in response to NO compare
Psest_1663 -1.2 -3.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1661 -1.2 -1.1 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_2232 -1.2 -8.6 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1961 -1.2 -8.5 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_1292 -1.2 -5.6 monothiol glutaredoxin, Grx4 family compare
Psest_0844 -1.2 -3.3 High-affinity Fe2+/Pb2+ permease compare
Psest_3044 -1.1 -5.7 deoxycytidine triphosphate deaminase compare
Psest_3000 -1.1 -6.3 molybdate ABC transporter, permease protein compare
Psest_1679 -1.1 -2.3 ribonuclease, Rne/Rng family compare
Psest_3351 -1.1 -3.1 peptide chain release factor 3 compare
Psest_1822 -1.1 -5.5 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2538 -1.1 -1.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0466 -1.1 -2.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3485 -1.1 -8.1 nitrate reductase, beta subunit compare
Psest_3998 -1.1 -5.0 glutamate--cysteine ligase compare
Psest_2329 -1.1 -8.5 Transcriptional regulator compare
Psest_3648 -1.0 -5.1 anthranilate phosphoribosyltransferase compare
Psest_1818 -1.0 -7.4 GDP-mannose 4,6-dehydratase compare
Psest_2999 -1.0 -4.7 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Psest_3486 -1.0 -8.9 respiratory nitrate reductase, alpha subunit compare
Psest_2104 -1.0 -0.7 IscR-regulated protein YhgI compare
Psest_0759 -1.0 -2.5 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_1486 -1.0 -3.3 hypothetical protein compare
Psest_1659 -1.0 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2325 -1.0 -6.3 alpha-L-glutamate ligase-related protein compare
Psest_1511 -1.0 -4.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0313 -1.0 -4.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4406 -0.9 -0.6 hypothetical protein compare
Psest_3112 -0.9 -2.7 electron transport complex, RnfABCDGE type, A subunit compare
Psest_0280 -0.9 -6.8 homoserine O-acetyltransferase compare
Psest_0955 -0.9 -4.1 D,L-lactate:H+ symporter (from data) compare
Psest_2265 -0.9 -3.2 Outer membrane protein compare
Psest_4298 -0.9 -1.5 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0843 -0.9 -4.9 hypothetical protein compare
Psest_4098 -0.9 -2.3 Superfamily I DNA and RNA helicases compare
Psest_0722 -0.9 -4.2 Predicted ATPase compare
Psest_0998 -0.9 -1.9 poly(A) polymerase compare
Psest_2324 -0.9 -7.6 hypothetical protein compare
Psest_4003 -0.9 -4.0 TIGR00153 family protein compare
Psest_2584 -0.9 -3.5 Phosphoribosylanthranilate isomerase compare
Psest_1417 -0.9 -1.8 hypothetical protein compare
Psest_3100 -0.8 -1.7 RNA polymerase sigma factor RpoE compare
Psest_1819 -0.8 -7.1 Nucleoside-diphosphate-sugar epimerases compare
Psest_3571 -0.8 -5.5 Outer membrane protein W compare
Psest_3489 -0.8 -5.9 hypothetical protein compare
Psest_3482 -0.8 -3.8 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3862 -0.8 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
Psest_2651 -0.8 -1.4 DNA topoisomerase I, bacterial compare
Psest_1814 -0.8 -6.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3490 -0.8 -3.6 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_4219 -0.8 -1.4 DNA polymerase I compare
Psest_1111 -0.8 -2.5 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0498 -0.8 -0.7 ribosome small subunit-dependent GTPase A compare
Psest_3129 -0.8 -1.1 tyrosine recombinase XerD compare
Psest_3092 -0.8 -1.3 ribonuclease III, bacterial compare
Psest_1724 -0.8 -2.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0279 -0.8 -4.1 methionine biosynthesis protein MetW compare
Psest_4103 -0.8 -1.5 AraC-type DNA-binding domain-containing proteins compare
Psest_2001 -0.8 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3339 -0.8 -3.0 Signal transduction histidine kinase compare
Psest_2285 -0.7 -1.8 ATP-dependent protease La compare
Psest_2136 -0.7 -5.4 Predicted homoserine dehydrogenase compare
Psest_0393 -0.7 -5.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3487 -0.7 -5.4 Nitrate/nitrite transporter compare
Psest_3664 -0.7 -1.1 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_3001 -0.7 -3.7 molybdenum ABC transporter, ATP-binding protein compare
Psest_3481 -0.7 -3.9 molybdenum cofactor biosynthesis protein A, bacterial compare
Psest_3045 -0.7 -2.2 Cold shock proteins compare
Psest_0218 -0.7 -2.2 Acyl-CoA hydrolase compare
Psest_1815 -0.7 -5.6 pseudaminic acid synthase compare
Psest_2025 -0.7 -1.7 cold shock domain protein CspD compare
Psest_0028 -0.7 -2.9 Coproporphyrinogen III oxidase compare
Psest_3944 -0.7 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1259 -0.7 -2.9 23S rRNA m2A2503 methyltransferase compare
Psest_3766 -0.6 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3323 -0.6 -3.4 ribonuclease, Rne/Rng family compare
Psest_0325 -0.6 -3.8 Putative threonine efflux protein compare
Psest_0257 -0.6 -1.6 Predicted Zn-dependent peptidases compare
Psest_3745 -0.6 -2.4 Uncharacterized enzyme of heme biosynthesis compare
Psest_3988 -0.6 -3.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1974 -0.6 -1.7 integration host factor, alpha subunit compare
Psest_1249 -0.6 -2.9 serine O-acetyltransferase compare
Psest_3550 -0.6 -2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_2650 -0.6 -2.1 hypothetical protein compare
Psest_1660 -0.6 -1.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0461 -0.6 -3.4 Glycosyltransferase involved in LPS biosynthesis compare
Psest_1518 -0.6 -1.6 tRNA_Ser_CGA compare
Psest_2446 -0.6 -1.9 acetyl-CoA acetyltransferases compare
Psest_0459 -0.6 -4.5 Predicted carbamoyl transferase, NodU family compare
Psest_3494 -0.6 -2.3 hypothetical protein compare
Psest_4170 -0.6 -1.8 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1475 -0.6 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_3115 -0.6 -2.4 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1813 -0.6 -3.9 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2333 -0.6 -0.9 Protein of unknown function (DUF3359). compare
Psest_1248 -0.6 -3.0 RNA methyltransferase, TrmH family, group 1 compare
Psest_2020 -0.6 -2.3 Uncharacterized protein involved in purine metabolism compare
Psest_3114 -0.5 -2.6 electron transport complex, RnfABCDGE type, C subunit compare
Psest_3117 -0.5 -1.4 electron transport complex, RnfABCDGE type, E subunit compare
Psest_0687 -0.5 -3.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1692 -0.5 -3.8 conserved hypothetical protein, YceG family compare
Psest_0030 -0.5 -1.5 Putative NADH-flavin reductase compare
Psest_3177 -0.5 -1.5 hypothetical protein compare
Psest_2646 -0.5 -1.1 SOS regulatory protein LexA compare
Psest_1167 -0.5 -1.1 hypothetical protein compare
Psest_3298 -0.5 -4.0 histidinol dehydrogenase compare
Psest_4191 -0.5 -1.1 Transcriptional regulator compare
Psest_0297 -0.5 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3488 -0.5 -1.9 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_4405 -0.5 -0.8 hypothetical protein compare
Psest_3927 -0.5 -2.1 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_3155 -0.5 -2.5 hypothetical protein compare
Psest_2188 -0.5 -3.2 AraC-type DNA-binding domain-containing proteins compare
Psest_0993 -0.5 -3.3 Glucose-6-phosphate isomerase compare
Psest_0795 -0.5 -2.2 ABC-type multidrug transport system, ATPase component compare
Psest_4343 -0.5 -1.6 Protein of unknown function (DUF3301). compare
Psest_0170 -0.5 -3.2 5,10-methenyltetrahydrofolate synthetase compare
Psest_4350 -0.5 -1.6 Transcriptional regulators of sugar metabolism compare
Psest_0673 -0.5 -2.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_2628 -0.5 -2.0 Flp pilus assembly protein, protease CpaA compare
Psest_0462 -0.5 -4.7 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1791 -0.5 -2.7 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_3317 -0.5 -2.4 Phosphotransferase System HPr (HPr) Family compare
Psest_3322 -0.5 -4.3 TIGR02099 family protein compare
Psest_0442 -0.5 -1.1 ATPases of the AAA+ class compare
Psest_2810 -0.5 -2.3 5'/3'-nucleotidase SurE compare
Psest_4009 -0.5 -1.8 conserverd hypothetical protein compare
Psest_2850 -0.5 -0.9 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_2809 -0.5 -1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_4276 -0.5 -2.0 hypothetical protein compare
Psest_2523 -0.5 -2.5 Predicted hydrolase of the alpha/beta-hydrolase fold compare
Psest_2712 -0.5 -1.9 Surface lipoprotein compare
Psest_1752 -0.5 -1.1 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_0959 -0.5 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_3536 -0.5 -1.3 hypothetical protein compare
Psest_1532 -0.5 -1.3 DNA recombination-dependent growth factor C compare
Psest_3084 -0.5 -1.5 methyltransferase, putative compare
Psest_1636 -0.5 -2.6 putative transporter, required for glycine utilization (from data) compare
Psest_2158 -0.5 -3.8 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_3649 -0.5 -2.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in metal limitation experiments