Experiment set13S504 for Cupriavidus basilensis FW507-4G11

Compare to:

Arthrobacter_FW306-2-2C-D06B_fractionated_cell_wall carbon source; Aerobic

200 most important genes:

  gene name fitness t score description  
RR42_RS16255 -6.0 -7.2 sulfate adenylyltransferase compare
RR42_RS06485 -5.7 -9.6 chorismate synthase compare
RR42_RS14390 -5.6 -3.8 3-isopropylmalate dehydratase compare
RR42_RS16250 -5.4 -8.8 sulfate adenylyltransferase compare
RR42_RS16275 -5.4 -3.7 membrane protein compare
RR42_RS14365 -5.3 -5.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS12175 -5.3 -10.2 malate synthase compare
RR42_RS01845 -5.3 -3.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS34255 -5.0 -6.8 aldehyde dehydrogenase compare
RR42_RS07425 -4.9 -7.5 IclR family transcriptional regulator compare
RR42_RS14385 -4.9 -5.8 3-isopropylmalate dehydrogenase compare
RR42_RS19005 -4.8 -6.4 3-dehydroquinate synthase compare
RR42_RS18305 -4.7 -3.3 anthranilate phosphoribosyltransferase compare
RR42_RS27550 -4.6 -1.9 hypothetical protein compare
RR42_RS19090 -4.5 -3.1 cytochrome C compare
RR42_RS14320 -4.4 -4.4 O-succinylhomoserine sulfhydrylase compare
RR42_RS23205 -4.4 -1.8 hypothetical protein compare
RR42_RS14400 -4.4 -4.8 isopropylmalate isomerase compare
RR42_RS18295 -4.2 -12.8 anthranilate synthase component I compare
RR42_RS14360 -4.1 -2.3 tryptophan synthase subunit alpha compare
RR42_RS16265 -4.1 -2.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS02085 -3.9 -5.3 RNA polymerase subunit sigma-54 compare
RR42_RS01160 -3.8 -8.6 homoserine O-acetyltransferase compare
RR42_RS16270 -3.7 -9.7 sulfite reductase compare
RR42_RS16335 -3.7 -2.1 hypothetical protein compare
RR42_RS00875 -3.7 -11.7 isocitrate dehydrogenase compare
RR42_RS13880 -3.7 -14.0 AMP-dependent synthetase compare
RR42_RS18990 -3.7 -19.1 glutamate synthase compare
RR42_RS04475 -3.6 -7.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS16245 -3.6 -5.4 uroporphyrin-III methyltransferase compare
RR42_RS18300 -3.4 -5.1 anthranilate synthase subunit II compare
RR42_RS05860 -3.4 -4.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS03095 -3.0 -2.0 succinyl-CoA synthetase subunit beta compare
RR42_RS36835 -3.0 -2.6 cytochrome P450 compare
RR42_RS16240 -2.9 -1.6 cobalamin biosynthesis protein CbiX compare
RR42_RS16280 -2.8 -5.1 transcriptional regulator compare
RR42_RS03910 -2.7 -2.0 (2Fe-2S)-binding protein compare
RR42_RS02500 -2.6 -1.7 TetR family transcriptional regulator compare
RR42_RS12040 -2.6 -8.1 MFS transporter compare
RR42_RS04460 -2.6 -5.4 chorismate mutase compare
RR42_RS01385 -2.4 -1.9 5,10-methylenetetrahydrofolate reductase compare
RR42_RS02775 -2.3 -1.7 molecular chaperone SurA compare
RR42_RS06250 -2.3 -2.2 dihydrodipicolinate synthase compare
RR42_RS12590 -2.2 -1.3 50S ribosomal protein L9 compare
RR42_RS34815 -2.1 -3.7 diguanylate cyclase compare
RR42_RS19655 -2.1 -1.5 tRNA-Ala compare
RR42_RS02810 -2.1 -1.4 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS06240 -2.0 -1.4 tryptophan--tRNA ligase compare
RR42_RS12550 -2.0 -1.3 hypothetical protein compare
RR42_RS04535 -2.0 -4.0 cysteine synthase compare
RR42_RS01380 -2.0 -2.5 membrane protein compare
RR42_RS04470 -2.0 -4.1 prephenate dehydrogenase compare
RR42_RS08575 -2.0 -1.1 tail protein compare
RR42_RS29610 -1.9 -2.2 cytochrome C2 compare
RR42_RS15050 -1.9 -7.0 DNA polymerase I compare
RR42_RS18985 -1.9 -3.8 glutamate synthase compare
RR42_RS03560 -1.9 -2.5 hypothetical protein compare
RR42_RS18310 -1.9 -1.5 indole-3-glycerol-phosphate synthase compare
RR42_RS36920 -1.8 -2.3 TetR family transcriptional regulator compare
RR42_RS01290 -1.8 -3.8 thiamine biosynthesis protein ThiC compare
RR42_RS12545 -1.8 -7.9 aminotransferase compare
RR42_RS18270 -1.7 -2.5 murein transglycosylase compare
RR42_RS21455 -1.7 -2.5 transposase compare
RR42_RS10415 -1.7 -1.3 hypothetical protein compare
RR42_RS30980 -1.7 -2.2 hypothetical protein compare
RR42_RS23125 -1.6 -1.5 hypothetical protein compare
RR42_RS21435 -1.6 -3.0 hypothetical protein compare
RR42_RS05810 -1.6 -1.3 RNA polymerase sigma factor compare
RR42_RS29865 -1.6 -2.4 hypothetical protein compare
RR42_RS24520 -1.5 -4.1 hypothetical protein compare
RR42_RS04545 -1.5 -6.4 deacetylase compare
RR42_RS17390 -1.5 -3.1 ATP-dependent DNA helicase RecG compare
RR42_RS12315 -1.5 -1.7 transcriptional regulator compare
RR42_RS20205 -1.5 -1.7 chromosome partitioning protein compare
RR42_RS18855 -1.5 -2.2 preprotein translocase compare
RR42_RS16525 -1.5 -2.7 anti-sigma factor compare
RR42_RS10240 -1.4 -2.8 hypothetical protein compare
RR42_RS18485 -1.4 -1.2 glutaredoxin compare
RR42_RS34260 -1.4 -3.1 Alcohol dehydrogenase (EC 1.1.1.1) (from data) compare
RR42_RS34270 -1.4 -2.7 Fis family transcriptional regulator compare
RR42_RS03080 -1.4 -1.9 recombinase RecA compare
RR42_RS31945 -1.4 -2.1 enoyl-CoA hydratase compare
RR42_RS34680 -1.4 -1.1 short-chain dehydrogenase compare
RR42_RS27700 -1.4 -1.8 hypothetical protein compare
RR42_RS07255 -1.3 -2.1 hypothetical protein compare
RR42_RS01505 -1.3 -1.2 tRNA-Cys compare
RR42_RS33270 -1.3 -2.3 hypothetical protein compare
RR42_RS13910 -1.3 -2.8 glutamate racemase compare
RR42_RS35780 -1.3 -1.7 chemotaxis protein CheY compare
RR42_RS17645 -1.3 -3.5 shikimate dehydrogenase compare
RR42_RS17620 -1.3 -2.0 phosphatidylglycerophosphatase compare
RR42_RS37375 -1.3 -1.3 short-chain dehydrogenase compare
RR42_RS25755 -1.3 -1.8 IclR family transcriptional regulator compare
RR42_RS01165 -1.3 -3.0 methionine biosynthesis protein MetW compare
RR42_RS21690 -1.3 -0.9 acetyltransferase compare
RR42_RS31285 -1.3 -1.2 XRE family transcriptional regulator compare
RR42_RS02950 -1.2 -1.5 malonate decarboxylase subunit beta compare
RR42_RS18820 -1.2 -3.6 cytochrome B compare
RR42_RS05945 -1.2 -0.8 thioredoxin compare
RR42_RS12085 -1.1 -2.3 glyoxalase compare
RR42_RS24820 -1.1 -2.2 hypothetical protein compare
RR42_RS15015 -1.1 -0.8 exodeoxyribonuclease VII small subunit compare
RR42_RS23730 -1.1 -2.3 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS06555 -1.1 -2.4 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) compare
RR42_RS32085 -1.1 -1.1 hypothetical protein compare
RR42_RS17050 -1.1 -3.5 phosphoribosylglycinamide formyltransferase compare
RR42_RS17045 -1.1 -4.9 SAM-dependent methyltransferase compare
RR42_RS18385 -1.1 -2.8 hypothetical protein compare
RR42_RS24605 -1.1 -5.9 TetR family transcriptional regulator compare
RR42_RS28165 -1.1 -2.5 hypothetical protein compare
RR42_RS02320 -1.0 -3.0 trehalose phosphatase compare
RR42_RS27915 -1.0 -1.1 acyl-CoA synthetase compare
RR42_RS03925 -1.0 -1.9 hypothetical protein compare
RR42_RS28480 -1.0 -1.8 DSBA oxidoreductase compare
RR42_RS16950 -1.0 -2.2 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS07045 -1.0 -1.4 hypothetical protein compare
RR42_RS16675 -1.0 -1.1 hypothetical protein compare
RR42_RS15225 -1.0 -1.0 RNA-binding protein compare
RR42_RS08220 -1.0 -1.3 hypothetical protein compare
RR42_RS00115 -1.0 -1.3 hypothetical protein compare
RR42_RS25650 -1.0 -0.9 hypothetical protein compare
RR42_RS13865 -1.0 -1.1 hypothetical protein compare
RR42_RS14755 -1.0 -1.9 hypothetical protein compare
RR42_RS23110 -1.0 -0.9 isochorismatase compare
RR42_RS33850 -1.0 -1.9 hypothetical protein compare
RR42_RS17490 -1.0 -2.1 NADP transhydrogenase subunit alpha compare
RR42_RS20575 -1.0 -1.8 hypothetical protein compare
RR42_RS05100 -1.0 -2.5 acetaldehyde dehydrogenase compare
RR42_RS07325 -1.0 -3.6 exodeoxyribonuclease III compare
RR42_RS11755 -1.0 -5.3 multidrug DMT transporter permease compare
RR42_RS01780 -1.0 -3.7 glutathione synthetase compare
RR42_RS13190 -1.0 -2.0 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS33695 -1.0 -1.9 membrane protein compare
RR42_RS17105 -1.0 -4.5 Clp protease ClpX compare
RR42_RS09555 -1.0 -1.4 universal stress protein UspA compare
RR42_RS11520 -0.9 -1.8 ABC transporter ATP-binding protein compare
RR42_RS05670 -0.9 -1.3 urease subunit beta compare
RR42_RS31505 -0.9 -1.5 hypothetical protein compare
RR42_RS18670 -0.9 -2.6 metal-dependent hydrolase compare
RR42_RS03795 -0.9 -2.6 tyrosine protein phosphatase compare
RR42_RS08425 -0.9 -1.2 hypothetical protein compare
RR42_RS12790 -0.9 -2.0 ACP phosphodiesterase compare
RR42_RS31625 -0.9 -2.1 amino acid ABC transporter compare
RR42_RS15000 -0.9 -1.4 GTP cyclohydrolase compare
RR42_RS13450 -0.9 -2.1 PhoU family transcriptional regulator compare
RR42_RS08180 -0.9 -1.1 hypothetical protein compare
RR42_RS07995 -0.9 -1.2 hypothetical protein compare
RR42_RS02380 -0.9 -3.1 FAD-linked oxidase compare
RR42_RS06710 -0.9 -1.1 hypothetical protein compare
RR42_RS05990 -0.9 -3.7 aromatic amino acid aminotransferase compare
RR42_RS13620 -0.9 -0.7 ferredoxin compare
RR42_RS35720 -0.9 -1.7 flagellar basal body rod protein FlgC compare
RR42_RS30905 -0.9 -2.2 aminotransferase DegT compare
RR42_RS06880 -0.9 -1.0 hypothetical protein compare
RR42_RS07605 -0.9 -2.2 poly-beta-hydroxybutyrate polymerase compare
RR42_RS22570 -0.9 -1.5 SAM-dependent methyltransferase compare
RR42_RS01885 -0.9 -2.1 cytochrome C oxidase assembly protein compare
RR42_RS31940 -0.9 -1.5 2-nitropropane dioxygenase compare
RR42_RS17595 -0.9 -1.0 hypothetical protein compare
RR42_RS05750 -0.9 -1.1 fructose 2,6-bisphosphatase compare
RR42_RS07620 -0.9 -2.6 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS08630 -0.8 -1.3 head completion/stabilization protein compare
RR42_RS08005 -0.8 -2.3 hypothetical protein compare
RR42_RS22150 -0.8 -1.4 thiol-disulfide isomerase compare
RR42_RS14530 -0.8 -2.2 2-hydroxyacid dehydrogenase compare
RR42_RS02315 -0.8 -3.7 threonine dehydratase compare
RR42_RS01775 -0.8 -2.7 glutamate--cysteine ligase compare
RR42_RS02750 -0.8 -3.3 mannose-1-phosphate guanylyltransferase compare
RR42_RS15845 -0.8 -1.5 biotin transporter BioY compare
RR42_RS27060 -0.8 -0.8 cation transporter compare
RR42_RS06460 -0.8 -1.4 alpha/beta hydrolase compare
RR42_RS20680 -0.8 -1.7 membrane protein compare
RR42_RS20570 -0.8 -0.9 biopolymer transporter ExbD compare
RR42_RS06895 -0.8 -1.2 hypothetical protein compare
RR42_RS18815 -0.8 -1.3 cytochrome C compare
RR42_RS12180 -0.8 -1.5 haloacid dehalogenase compare
RR42_RS18380 -0.8 -1.7 hypothetical protein compare
RR42_RS31535 -0.8 -1.1 transcriptional regulator compare
RR42_RS16350 -0.8 -2.5 hypothetical protein compare
RR42_RS18020 -0.8 -1.4 ornithine acetyltransferase compare
RR42_RS05115 -0.8 -1.9 LysR family transcriptional regulator compare
RR42_RS01720 -0.8 -0.7 membrane protein compare
RR42_RS02140 -0.8 -1.1 hypothetical protein compare
RR42_RS35685 -0.8 -2.6 flagellar rod assembly protein FlgJ compare
RR42_RS25590 -0.8 -2.6 glucose 1-dehydrogenase compare
RR42_RS05485 -0.8 -1.3 polynucleotide phosphorylase/polyadenylase compare
RR42_RS02705 -0.8 -1.0 Holliday junction DNA helicase RuvA compare
RR42_RS16260 -0.8 -0.5 phosphoadenosine phosphosulfate reductase compare
RR42_RS34205 -0.8 -1.9 hypothetical protein compare
RR42_RS15180 -0.8 -2.7 hypothetical protein compare
RR42_RS27770 -0.8 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
RR42_RS06925 -0.8 -1.0 hypothetical protein compare
RR42_RS19885 -0.8 -0.7 aminoglycoside transporter compare
RR42_RS04045 -0.8 -1.0 proline hydroxylase compare
RR42_RS24790 -0.8 -0.9 LysR family transcriptional regulator compare
RR42_RS15080 -0.8 -0.9 GntR family transcriptional regulator compare
RR42_RS11200 -0.8 -2.5 XRE family transcriptional regulator compare
RR42_RS30320 -0.7 -1.2 hypothetical protein compare
RR42_RS07955 -0.7 -2.8 allantoate amidohydrolase compare
RR42_RS34215 -0.7 -0.7 ferredoxin compare


Specific Phenotypes

For 5 genes in this experiment

For necromass as carbon source; aerobic Arthrobacter_FW306-2-2C-D06B_fractionated_cell_wall in Cupriavidus basilensis FW507-4G11

For necromass as carbon source; aerobic Arthrobacter_FW306-2-2C-D06B_fractionated_cell_wall across organisms