Experiment set13S29 for Phocaeicola vulgatus CL09T03C04

Compare to:

Mucin from porcine stomach type II 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS11730 -5.8 -3.8 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS07655 -3.9 -2.9 hypothetical protein compare
HMPREF1058_RS13970 -3.8 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS14035 -2.7 -2.7 hypothetical protein compare
HMPREF1058_RS01800 -2.4 -3.4 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1058_RS05140 -2.4 -5.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS09970 -2.3 -2.0 hypothetical protein compare
HMPREF1058_RS11205 -2.2 -2.1 radical SAM protein compare
HMPREF1058_RS11490 -2.1 -5.8 redox-regulated ATPase YchF compare
HMPREF1058_RS16505 -2.0 -7.8 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS02755 -2.0 -2.7 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS14200 -2.0 -10.1 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS04065 -2.0 -1.9 VWA domain-containing protein compare
HMPREF1058_RS02405 -1.9 -11.5 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS16070 -1.9 -5.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS15375 -1.8 -1.7 DUF4369 domain-containing protein compare
HMPREF1058_RS11890 -1.8 -4.5 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS16500 -1.8 -3.8 OadG family protein compare
HMPREF1058_RS09445 -1.8 -1.6 tyrosine-type recombinase/integrase compare
HMPREF1058_RS10840 -1.7 -1.7 hypothetical protein compare
HMPREF1058_RS12455 -1.7 -3.0 dUTP diphosphatase compare
HMPREF1058_RS0119260 -1.7 -1.8 hypothetical protein compare
HMPREF1058_RS16495 -1.7 -3.5 biotin/lipoyl-binding protein compare
HMPREF1058_RS11270 -1.7 -8.9 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS02750 -1.7 -1.9 BamA/TamA family outer membrane protein compare
HMPREF1058_RS06345 -1.6 -4.7 Fe-S cluster domain-containing protein compare
HMPREF1058_RS10075 -1.6 -9.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS06600 -1.6 -2.8 DedA family protein compare
HMPREF1058_RS19090 -1.6 -0.8 tRNA-Phe compare
HMPREF1058_RS14215 -1.6 -3.5 (d)CMP kinase compare
HMPREF1058_RS04590 -1.6 -2.4 DUF4494 family protein compare
HMPREF1058_RS15265 -1.5 -4.1 queuosine precursor transporter compare
HMPREF1058_RS04050 -1.5 -3.4 protein BatD compare
HMPREF1058_RS10080 -1.5 -9.4 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS07455 -1.4 -3.0 HDIG domain-containing protein compare
HMPREF1058_RS14740 -1.4 -4.5 iron ABC transporter permease compare
HMPREF1058_RS02410 -1.4 -9.0 methylmalonyl-CoA mutase compare
HMPREF1058_RS04045 -1.4 -3.9 tetratricopeptide repeat protein compare
HMPREF1058_RS06410 -1.3 -2.5 elongation factor 4 compare
HMPREF1058_RS00595 -1.3 -3.2 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS05615 -1.3 -1.1 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS10295 -1.3 -2.9 hypothetical protein compare
HMPREF1058_RS02975 -1.3 -3.1 hypothetical protein compare
HMPREF1058_RS10495 -1.3 -1.7 rhomboid family intramembrane serine protease compare
HMPREF1058_RS03085 -1.3 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS06320 -1.3 -4.6 electron transport complex subunit RsxA compare
HMPREF1058_RS04075 -1.2 -2.0 DUF58 domain-containing protein compare
HMPREF1058_RS05650 -1.2 -3.0 hypothetical protein compare
HMPREF1058_RS17130 -1.2 -1.9 tetratricopeptide repeat protein compare
HMPREF1058_RS14465 -1.2 -2.5 enoyl-ACP reductase compare
HMPREF1058_RS18895 -1.2 -1.7 hypothetical protein compare
HMPREF1058_RS07635 -1.2 -2.3 50S ribosomal protein L9 compare
HMPREF1058_RS14745 -1.2 -6.2 ABC transporter substrate-binding protein compare
HMPREF1058_RS05360 -1.2 -1.7 helix-turn-helix domain-containing protein compare
HMPREF1058_RS12070 -1.2 -3.1 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS09680 -1.2 -2.7 site-specific tyrosine recombinase XerD compare
HMPREF1058_RS11310 -1.1 -3.7 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS08875 -1.1 -5.5 rhamnulose-1-phosphate aldolase compare
HMPREF1058_RS18635 -1.1 -1.6 PepSY-like domain-containing protein compare
HMPREF1058_RS04070 -1.1 -2.3 hypothetical protein compare
HMPREF1058_RS14835 -1.1 -3.5 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS12520 -1.1 -7.9 nucleoside kinase compare
HMPREF1058_RS15000 -1.1 -4.4 hypothetical protein compare
HMPREF1058_RS11500 -1.1 -4.9 DNA polymerase I compare
HMPREF1058_RS02140 -1.1 -6.2 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS02540 -1.0 -3.4 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS14505 -1.0 -2.9 mechanosensitive ion channel compare
HMPREF1058_RS03105 -1.0 -2.6 ABC transporter permease compare
HMPREF1058_RS06335 -1.0 -4.6 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS16065 -1.0 -3.4 DUF1016 family protein compare
HMPREF1058_RS04300 -1.0 -3.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS10720 -1.0 -4.0 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS17175 -1.0 -4.0 MarC family protein compare
HMPREF1058_RS05880 -1.0 -2.0 DUF5063 domain-containing protein compare
HMPREF1058_RS0119250 -0.9 -1.9 hypothetical protein compare
HMPREF1058_RS16690 -0.9 -3.7 NTP transferase domain-containing protein compare
HMPREF1058_RS14760 -0.9 -7.8 TonB-dependent receptor compare
HMPREF1058_RS17080 -0.9 -0.8 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS11380 -0.9 -3.3 DUF4271 domain-containing protein compare
HMPREF1058_RS14755 -0.9 -5.7 hypothetical protein compare
HMPREF1058_RS04290 -0.9 -3.8 DUF1015 domain-containing protein compare
HMPREF1058_RS11925 -0.9 -1.7 DUF2975 domain-containing protein compare
HMPREF1058_RS05620 -0.9 -2.1 HipA N-terminal domain-containing protein compare
HMPREF1058_RS06195 -0.9 -4.0 diaminopimelate decarboxylase compare
HMPREF1058_RS12990 -0.9 -1.8 hypothetical protein compare
HMPREF1058_RS05145 -0.9 -3.8 ATP-binding protein compare
HMPREF1058_RS11910 -0.9 -4.1 DEAD/DEAH box helicase compare
HMPREF1058_RS04550 -0.9 -1.4 hypothetical protein compare
HMPREF1058_RS03530 -0.9 -0.8 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS14735 -0.9 -3.3 ABC transporter ATP-binding protein compare
HMPREF1058_RS01745 -0.9 -2.6 PorT family protein compare
HMPREF1058_RS11375 -0.9 -1.2 TIGR00730 family Rossman fold protein compare
HMPREF1058_RS11040 -0.9 -3.5 polysaccharide deacetylase family protein compare
HMPREF1058_RS06325 -0.9 -1.8 electron transport complex subunit E compare
HMPREF1058_RS21520 -0.8 -0.9 hypothetical protein compare
HMPREF1058_RS17940 -0.8 -3.3 alpha-amylase compare
HMPREF1058_RS09795 -0.8 -2.1 DUF1896 domain-containing protein compare
HMPREF1058_RS11220 -0.8 -1.1 RNA methyltransferase compare
HMPREF1058_RS17565 -0.8 -1.5 tyrosine-type recombinase/integrase compare
HMPREF1058_RS05765 -0.8 -4.2 nucleoside phosphorylase compare
HMPREF1058_RS09185 -0.8 -2.4 DUF4252 domain-containing protein compare
HMPREF1058_RS03510 -0.8 -3.5 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS17205 -0.8 -1.4 DUF4199 domain-containing protein compare
HMPREF1058_RS04305 -0.8 -2.2 DEAD/DEAH box helicase compare
HMPREF1058_RS06565 -0.8 -2.7 phosphate signaling complex protein PhoU compare
HMPREF1058_RS03110 -0.8 -3.8 ABC transporter ATP-binding protein compare
HMPREF1058_RS0119830 -0.8 -0.7 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS05005 -0.8 -1.4 hypothetical protein compare
HMPREF1058_RS04565 -0.8 -1.4 hypothetical protein compare
HMPREF1058_RS03910 -0.8 -3.3 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS04025 -0.7 -3.3 hypothetical protein compare
HMPREF1058_RS08355 -0.7 -1.2 hypothetical protein compare
HMPREF1058_RS16510 -0.7 -1.2 methylmalonyl-CoA epimerase compare
HMPREF1058_RS07075 -0.7 -3.2 SPOR domain-containing protein compare
HMPREF1058_RS16845 -0.7 -2.7 SurA N-terminal domain-containing protein compare
HMPREF1058_RS05300 -0.7 -1.0 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS16060 -0.7 -1.1 5S ribosomal RNA compare
HMPREF1058_RS15665 -0.7 -2.9 MFS transporter compare
HMPREF1058_RS10650 -0.7 -2.8 hypothetical protein compare
HMPREF1058_RS07340 -0.7 -2.3 HU family DNA-binding protein compare
HMPREF1058_RS13675 -0.7 -3.4 hypothetical protein compare
HMPREF1058_RS21515 -0.7 -2.6 hypothetical protein compare
HMPREF1058_RS05775 -0.7 -2.4 NfeD family protein compare
HMPREF1058_RS06310 -0.7 -2.9 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS09460 -0.7 -5.0 gamma carbonic anhydrase family protein compare
HMPREF1058_RS14660 -0.7 -3.6 TolC family protein compare
HMPREF1058_RS18790 -0.7 -2.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
HMPREF1058_RS06255 -0.7 -4.2 hypothetical protein compare
HMPREF1058_RS07245 -0.7 -2.3 Rne/Rng family ribonuclease compare
HMPREF1058_RS18310 -0.7 -3.8 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS01725 -0.7 -2.7 peptide MFS transporter compare
HMPREF1058_RS15645 -0.7 -2.7 NUDIX hydrolase compare
HMPREF1058_RS16515 -0.7 -2.7 GNAT family N-acetyltransferase compare
HMPREF1058_RS17035 -0.7 -3.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS12105 -0.7 -2.4 shikimate kinase compare
HMPREF1058_RS14305 -0.7 -1.3 DNA topoisomerase 3 compare
HMPREF1058_RS16985 -0.7 -2.5 sensor histidine kinase compare
HMPREF1058_RS04375 -0.7 -2.8 carbon-nitrogen hydrolase compare
HMPREF1058_RS0119380 -0.7 -1.6 IS66 family insertion sequence element accessory protein TnpB compare
HMPREF1058_RS06300 -0.7 -3.5 YitT family protein compare
HMPREF1058_RS13635 -0.7 -2.1 gliding motility lipoprotein GldH compare
HMPREF1058_RS15915 -0.7 -1.8 OmpH family outer membrane protein compare
HMPREF1058_RS10955 -0.7 -2.7 phosphatase PAP2 family protein compare
HMPREF1058_RS03470 -0.7 -2.4 glycosyltransferase compare
HMPREF1058_RS06350 -0.7 -1.6 SoxR reducing system RseC family protein compare
HMPREF1058_RS01290 -0.6 -1.4 DUF1622 domain-containing protein compare
HMPREF1058_RS11275 -0.6 -1.9 hypothetical protein compare
HMPREF1058_RS09930 -0.6 -2.6 toprim domain-containing protein compare
HMPREF1058_RS05070 -0.6 -1.9 hypothetical protein compare
HMPREF1058_RS0119825 -0.6 -3.9 DEAD/DEAH box helicase compare
HMPREF1058_RS05805 -0.6 -3.4 bifunctional dihydroorotate dehydrogenase B NAD binding subunit/NADPH-dependent glutamate synthase compare
HMPREF1058_RS18870 -0.6 -1.0 hypothetical protein compare
HMPREF1058_RS14220 -0.6 -2.1 energy transducer TonB compare
HMPREF1058_RS08315 -0.6 -2.5 biopolymer transporter ExbD compare
HMPREF1058_RS08535 -0.6 -1.1 elongation factor P compare
HMPREF1058_RS13350 -0.6 -4.3 Trk system potassium transporter TrkA compare
HMPREF1058_RS15975 -0.6 -2.6 saccharopine dehydrogenase family protein compare
HMPREF1058_RS04950 -0.6 -1.3 hypothetical protein compare
HMPREF1058_RS15735 -0.6 -1.8 hypothetical protein compare
HMPREF1058_RS18560 -0.6 -1.7 recombination protein RecR compare
HMPREF1058_RS19210 -0.6 -0.9 hypothetical protein compare
HMPREF1058_RS16895 -0.6 -2.2 hypothetical protein compare
HMPREF1058_RS04270 -0.6 -0.7 ferredoxin compare
HMPREF1058_RS04740 -0.6 -2.4 DUF5606 domain-containing protein compare
HMPREF1058_RS07310 -0.6 -3.3 glucosamine-6-phosphate deaminase compare
HMPREF1058_RS12885 -0.6 -2.5 purine-nucleoside phosphorylase compare
HMPREF1058_RS07675 -0.6 -3.2 elongation factor G compare
HMPREF1058_RS01665 -0.6 -1.2 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS16900 -0.6 -2.7 hypothetical protein compare
HMPREF1058_RS10920 -0.6 -1.5 viroplasmin family protein compare
HMPREF1058_RS18905 -0.6 -1.2 hypothetical protein compare
HMPREF1058_RS06380 -0.6 -2.0 copper homeostasis protein CutC compare
HMPREF1058_RS15725 -0.6 -3.2 DUF4476 domain-containing protein compare
HMPREF1058_RS04295 -0.6 -2.2 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS05905 -0.6 -2.3 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS02480 -0.6 -1.7 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1058_RS17060 -0.6 -2.6 HAD family hydrolase compare
HMPREF1058_RS02340 -0.6 -3.7 RNA degradosome polyphosphate kinase compare
HMPREF1058_RS06340 -0.5 -1.7 electron transport complex subunit RsxC compare
HMPREF1058_RS12775 -0.5 -1.4 hypothetical protein compare
HMPREF1058_RS05920 -0.5 -1.0 hypothetical protein compare
HMPREF1058_RS04970 -0.5 -1.0 hypothetical protein compare
HMPREF1058_RS17050 -0.5 -2.2 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS03075 -0.5 -1.5 DNA helicase RecQ compare
HMPREF1058_RS16750 -0.5 -1.2 shikimate dehydrogenase compare
HMPREF1058_RS10970 -0.5 -2.8 ribonuclease R compare
HMPREF1058_RS01535 -0.5 -1.5 flavin reductase family protein compare
HMPREF1058_RS14020 -0.5 -3.0 cardiolipin synthase compare
HMPREF1058_RS04370 -0.5 -1.8 agmatine deiminase family protein compare
HMPREF1058_RS15920 -0.5 -0.8 hypothetical protein compare
HMPREF1058_RS04040 -0.5 -2.7 phosphatase PAP2 family protein compare
HMPREF1058_RS17400 -0.5 -3.0 tyrosine-protein kinase compare
HMPREF1058_RS01900 -0.5 -1.4 hypothetical protein compare
HMPREF1058_RS20485 -0.5 -0.9 mobilization protein compare
HMPREF1058_RS17370 -0.5 -2.5 UpxY family transcription antiterminator compare
HMPREF1058_RS14130 -0.5 -2.0 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS03435 -0.5 -1.8 DNA-binding protein compare
HMPREF1058_RS17405 -0.5 -2.1 polysaccharide export protein compare
HMPREF1058_RS20295 -0.5 -1.0 hypothetical protein compare
HMPREF1058_RS14750 -0.5 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source Mucin from porcine stomach,Type II across organisms