Experiment set13IT093 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with no fungus

200 most detrimental genes:

  gene name fitness t score description  
SMc04001 +2.8 3.4 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc00150 +2.7 23.4 hypothetical protein compare
SMc01595 +2.6 7.7 sensor histidine kinase transmembrane protein compare
SMc01907 +2.4 17.7 hypothetical protein compare
SMc02719 +2.3 1.3 transposase compare
SMc01099 +2.3 4.0 tRNA pseudouridine synthase A compare
SMc03900 +2.2 15.3 cyclic beta-1,2-glucan ABc transporter compare
SMc04094 +2.1 5.0 hypothetical protein compare
SMc04382 +2.1 18.6 beta-(1,2)-glucan production associated transmembrane protein compare
SMc01222 +2.1 8.0 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc00247 +1.9 9.6 phosphatidylcholine synthase compare
SMc02367 +1.9 8.4 sensor histidine kinase transmembrane protein compare
SMc00838 +1.8 5.1 hypothetical protein compare
SMc00131 +1.8 11.8 transcriptional regulator compare
SMc02497 +1.8 2.8 hypothetical protein compare
SM_b20613 +1.7 7.8 C4-dicarboxylate transport transcriptional regulator compare
SMa0753 +1.7 0.9 hypothetical protein compare
SMc01120 +1.7 4.9 hypothetical protein compare
SMc02084 +1.7 1.3 biopolymer transport transmembrane protein compare
SM_b20043 +1.6 7.0 hypothetical protein compare
SMc03123 +1.6 11.9 transcriptional regulator compare
SMc00761 +1.6 10.3 oxidoreductase compare
SMc00337 +1.5 1.5 hypothetical protein compare
SMc02485 +1.5 2.1 signal peptide protein compare
SMc02366 +1.5 8.8 transcriptional regulator compare
SMc00129 +1.4 6.3 sensor histidine kinase compare
SM_b20293 +1.4 1.5 hypothetical protein compare
SMc04220 +1.4 1.5 transcriptional regulator compare
SMc00458 +1.4 10.4 transcriptional regulator compare
SM_b20387 +1.4 1.7 transcriptional regulator compare
SM_b21374 +1.4 2.0 tagatose kinase (EC 2.7.1.101) (from data) compare
SMc00352 +1.4 2.5 acetyltransferase compare
SMc01223 +1.4 3.1 transcriptional regulator compare
SMa5010 +1.4 1.3 hypothetical protein compare
SMc00619 +1.4 0.9 hypothetical protein compare
SMc00239 +1.3 0.9 hypothetical protein compare
SMc01991 +1.3 1.7 short chain dehydrogenase compare
SMc01858 +1.3 1.3 S-adenosyl-methyltransferase MraW compare
SMc02449 +1.3 3.3 acetyltransferase compare
SMc00431 +1.3 4.0 hypothetical protein compare
SM_b21491 +1.3 8.5 hypothetical protein compare
SM_b20935 +1.2 3.2 transcriptional regulator compare
SMc02269 +1.2 6.2 capsular polysaccharide biosynthesis/export protein compare
SMc02273 +1.2 10.6 fatty acid synthase transmembrane protein compare
SMc01216 +1.2 0.9 hypothetical protein compare
SMc03153 +1.2 3.4 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMa1779 +1.2 2.1 hypothetical protein compare
SMc02684 +1.2 6.4 hydrolase/peptidase compare
SMc01769 +1.2 7.3 hypothetical protein compare
SMa1570 +1.2 1.6 PilA2 pilus assembly protein compare
SM_b21192 +1.2 6.6 fructose-1,6-bisphosphate aldolase compare
SMa1658 +1.2 2.1 hypothetical protein compare
SMc01364 +1.2 1.2 DNA topoisomerase I compare
SM_b21170 +1.2 3.1 guanylate kinase compare
SMa0748 +1.2 1.9 MucR family transcriptional regulator compare
SMc00540 +1.1 2.2 hypothetical protein compare
SM_b21266 +1.1 4.6 hypothetical protein compare
SMc04000 +1.1 4.3 hypothetical protein compare
SMc03836 +1.1 1.4 acyl-CoA thioesterase i protein compare
SMc00522 +1.1 7.5 ATP-dependent RNA helicase compare
SMc00403 +1.1 4.3 NOL1/NOP2/SUN family signature protein compare
SMc03855 +1.1 2.6 hypothetical protein compare
SMc04297 +1.1 2.2 transcriptional regulator compare
SM_b20746 +1.1 1.3 hypothetical protein compare
SMc00075 +1.1 3.7 ribosomal-protein-alanine acetyltransferase compare
SMa5036 +1.1 2.7 hypothetical protein compare
SMc01613 +1.1 2.7 ribose-5-phosphate isomerase B compare
SMc00495 +1.1 5.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc03963 +1.1 4.7 sulfolipid biosynthesis protein compare
SMc00505 +1.1 1.8 hypothetical protein compare
SMc03002 +1.1 2.7 hypothetical protein compare
SMc04081 +1.1 6.1 glycosyl transferase (sulfolipid biosynthesis) protein compare
SM_b20960 +1.1 5.2 UDP-glucose pyrophosphorylase compare
SMc00061 +1.0 2.8 hypothetical protein compare
SMc00618 +1.0 7.3 polyphosphate kinase compare
SMc01615 +1.0 3.0 transcriptional regulator compare
SMc04211 +1.0 2.4 hypothetical protein compare
SMc00361 +1.0 1.5 hypothetical protein compare
SMc00494 +1.0 1.4 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc02490 +1.0 5.1 hypothetical protein compare
SMc02137 +1.0 2.0 ornithine carbamoyltransferase compare
SMc02272 +1.0 4.8 acyl-transferase transferase compare
SMc01131 +1.0 3.1 hypothetical protein compare
SMc03111 +1.0 4.6 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMc00349 +1.0 4.0 GTP-binding protein LepA compare
SMc02041 +1.0 1.4 short chain dehydrogenase compare
SM_b21256 +1.0 5.6 nucleotide sugar oxidase compare
SMc03842 +1.0 1.6 hypothetical protein compare
SMc00455 +1.0 3.0 hypothetical protein compare
SM_b21397 +0.9 1.1 hypothetical protein compare
SMc02434 +0.9 1.3 hypothetical protein compare
SMa1702 +0.9 2.3 hypothetical protein compare
SM_b21252 +0.9 5.8 glycosyltransferase compare
SMc02854 +0.9 5.0 signal peptide protein compare
SMa0166 +0.9 2.3 hypothetical protein compare
SMc02478 +0.9 5.1 hypothetical protein compare
SMa2289 +0.9 0.8 hypothetical protein compare
SMc01984 +0.9 1.1 cytochrome-C oxidase transmembrane protein compare
SMa1894 +0.9 1.7 methionine sulfoxide reductase B compare
SMc01351 +0.9 1.9 hypothetical protein compare
SMc03072 +0.9 1.6 hypothetical protein compare
SMc02799 +0.9 1.6 16S rRNA methyltransferase GidB compare
SMc00973 +0.9 1.7 hypothetical protein compare
SM_b21372 +0.9 5.7 LacI family transcriptional regulator compare
SMa0834 +0.9 3.9 FdxB ferredoxin III compare
SMa0210 +0.9 2.2 hypothetical protein compare
SMc03250 +0.9 2.1 hypothetical protein compare
SMc04174 +0.9 0.7 signal peptide protein compare
SM_b20866 +0.9 2.6 hypothetical protein compare
SMa0091 +0.9 2.1 hypothetical protein compare
SMa0312 +0.9 1.6 hypothetical protein compare
SMa1118 +0.9 1.1 HspC2 heat shock protein compare
SMa0854 +0.9 1.9 3-ketoacyl-ACP reductase compare
SMc00565 +0.9 1.1 50S ribosomal protein L9 compare
SM_b21689 +0.9 1.7 hypothetical protein compare
SMc00396 +0.9 1.8 hypothetical protein compare
SMc00390 +0.9 1.5 hypothetical protein compare
SMa1400 +0.8 1.7 acyl-CoA dehydrogenase compare
SMa5033 +0.8 0.6 hypothetical protein compare
SMc02173 +0.8 1.2 hypothetical protein compare
SMc00286 +0.8 0.7 hemolysin-type calcium-binding protein compare
SMc01107 +0.8 4.1 hypothetical protein compare
SMa1547 +0.8 1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) compare
SMc02697 +0.8 0.8 hypothetical protein compare
SM_b20577 +0.8 2.6 protocatechuate 3,4-dioxygenase subunit beta compare
SMc04462 +0.8 1.9 glycerate dehydrogenase compare
SM_b20537 +0.8 3.4 transcriptional regulator compare
SMc03961 +0.8 3.6 sulfolipid (UDP-sulfoquinovose) biosynthesis protein compare
SM_b20955 +0.8 1.7 endo-beta-1,3-1,4-glycanase compare
SMc04213 +0.8 1.2 diacylglycerol kinase compare
SM_b21678 +0.8 1.1 hypothetical protein compare
SM_b20392 +0.8 3.3 transcriptional regulator NanR compare
SMc02615 +0.8 1.5 signal peptide protein compare
SMc00166 +0.8 0.9 oxidoreductase NAD protein compare
SM_b20347 +0.8 2.3 transcriptional regulator compare
SMc02271 +0.8 3.8 ribitol type dehydrogenase compare
SMa1100 +0.8 2.2 hypothetical protein compare
SMa1002 +0.8 0.9 hypothetical protein compare
SMc03179 +0.8 4.2 monovalent cation/H+ antiporter subunit A compare
SMc02778 +0.8 0.8 hydroxyacid aldolase compare
SMc00288 +0.8 2.4 signal peptide protein compare
SMc00325 +0.8 3.7 hypothetical protein compare
SMc01455 +0.8 2.3 D-lactate dehydrogenase (cytochrome) protein compare
SMc04381 +0.8 3.4 hypothetical protein compare
SMc03156 +0.8 3.0 hypothetical protein compare
SMc02655 +0.8 1.8 hypothetical protein compare
SM_b20959 +0.8 4.3 glucosyltransferase compare
SM_b20750 +0.8 0.9 dehydrogenase compare
SMc03831 +0.8 2.7 hypothetical protein compare
SMa0126 +0.8 1.0 CspA8 Cold shock family protein compare
SM_b20326 +0.8 2.4 ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) (from data) compare
SMc00241 +0.8 1.4 transcriptional regulator compare
SMc01454 +0.8 4.0 hypothetical protein compare
SMc01806 +0.8 2.0 enoyl-CoA hydratase compare
SMc00090 +0.8 3.4 sulfate adenylyltransferase compare
SMc00976 +0.8 1.2 enoyl-CoA hydratase compare
SMc02614 +0.8 1.7 hypothetical protein compare
SMc04043 +0.8 3.6 hypothetical protein compare
SMc03932 +0.8 1.5 sarcosine oxidase subunit delta compare
SMc02384 +0.8 2.4 glycosyltransferase transmembrane protein compare
SM_b21471 +0.8 1.9 hypothetical protein compare
SMc02520 +0.8 3.7 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc04327 +0.8 0.7 hypothetical protein compare
SMc00425 +0.8 1.1 transcriptional regulator compare
SM_b21269 +0.8 4.6 ABC transporter ATPase compare
SM_b20684 +0.8 5.8 hypothetical protein compare
SMc00060 +0.8 2.8 hypothetical protein compare
SM_b20571 +0.8 2.8 aliphatic sulfonate ABC transporter permease compare
SM_b20210 +0.8 1.0 oxidoreductase compare
SM_b21265 +0.8 4.7 glycosyltransferase compare
SM_b20261 +0.8 1.6 malate dehydrogenase compare
SMc00812 +0.8 1.8 hypothetical protein compare
SM_b20320 +0.8 0.7 TRAP-type large permease component compare
SMc00482 +0.8 3.9 hypothetical protein compare
SM_b21225 +0.7 1.3 inositol monophosphatase compare
SM_b20117 +0.7 1.1 sugar transferase compare
SM_b20131 +0.7 1.2 oxidoreductase compare
SMc01698 +0.7 2.8 oxidoreductase compare
SMc01177 +0.7 1.9 hypothetical protein compare
SMa5007 +0.7 2.4 transcriptional regulator compare
SM_b21026 +0.7 2.3 exopeptide compare
SMc02765 +0.7 4.1 tryptophan synthase subunit alpha compare
SMc00044 +0.7 2.2 amino acid efflux protein compare
SM_b21304 +0.7 2.6 NG,NG-dimethylarginine dimethylaminohydrolase (dimethylargininase) protein compare
SM_b20921 +0.7 1.2 hypothetical protein compare
SMc00799 +0.7 2.3 hypothetical protein compare
SMa1210 +0.7 2.6 nitrogen fixation protein FixH compare
SM_b20050 +0.7 1.2 hypothetical protein compare
SMc00727 +0.7 3.4 3-hydroxybutyryl-CoA dehydrogenase compare
SMc02112 +0.7 3.4 hypothetical protein compare
SMc03182 +0.7 2.4 pH adaptation potassium efflux system E transmembrane protein compare
SMc04232 +0.7 1.0 glycine rich transmembrane protein compare
SMc00414 +0.7 5.2 hypothetical protein compare
SM_b20834 +0.7 4.2 surface saccharide synthesis protein compare
SMc04404 +0.7 0.8 amino acid efflux transmembrane protein compare
SMc01139 +0.7 1.9 RNA polymerase factor sigma-54 compare
SMc01232 +0.7 1.6 hypothetical protein compare
SMc02270 +0.7 4.9 capsular polysaccharide biosynthesis\export transmembrane protein compare
SMc03972 +0.7 3.3 multidrug efflux system transmembrane protein compare
SMc03787 +0.7 2.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment