Experiment set13IT079 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nickel (II) chloride hexahydrate 1.5 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5679 -3.2 -3.1 hypothetical protein compare
Pf6N2E2_43 -3.2 -3.8 Histidine permease YuiF compare
Pf6N2E2_4071 -2.7 -4.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1534 -2.7 -1.8 Probable transmembrane protein compare
Pf6N2E2_1040 -2.6 -2.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_760 -2.5 -10.6 Na+/H+ antiporter NhaB compare
Pf6N2E2_4797 -2.5 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2200 -2.4 -1.6 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_5705 -2.3 -4.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4999 -2.1 -5.8 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3574 -2.1 -10.5 Mannose-6-phosphate isomerase (EC 5.3.1.8) conserved
Pf6N2E2_2574 -2.1 -1.9 Flagellar synthesis regulator FleN compare
Pf6N2E2_204 -2.1 -2.3 hypothetical protein compare
Pf6N2E2_4612 -2.0 -4.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_4494 -2.0 -3.8 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_2350 -2.0 -3.1 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_2549 -2.0 -1.8 hypothetical protein compare
Pf6N2E2_3351 -2.0 -2.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_1625 -1.8 -2.6 Ferric reductase (1.6.99.14) compare
Pf6N2E2_5746 -1.8 -1.2 Cobalamin synthase compare
Pf6N2E2_2984 -1.7 -2.2 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_2518 -1.7 -2.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3461 -1.7 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3908 -1.7 -2.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5430 -1.7 -3.9 Transglycosylase, Slt family compare
Pf6N2E2_4155 -1.6 -6.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_40 -1.6 -3.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1502 -1.6 -2.3 Two-component system regulatory protein compare
Pf6N2E2_6045 -1.5 -1.7 hypothetical protein compare
Pf6N2E2_634 -1.5 -7.2 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_2646 -1.5 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_1545 -1.5 -1.9 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_623 -1.5 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_1294 -1.5 -1.8 Carbon starvation protein A compare
Pf6N2E2_4803 -1.5 -0.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4418 -1.5 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2129 -1.4 -3.0 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_1606 -1.4 -3.0 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_5571 -1.4 -1.0 hypothetical protein compare
Pf6N2E2_2864 -1.4 -2.4 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_895 -1.4 -2.9 Transcriptional regulator, HxlR family compare
Pf6N2E2_5703 -1.4 -2.5 outer membrane protein H1 compare
Pf6N2E2_2397 -1.4 -2.0 Two-component system response regulator QseB compare
Pf6N2E2_1683 -1.4 -2.6 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_4545 -1.4 -1.9 hypothetical protein compare
Pf6N2E2_5155 -1.3 -2.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_1705 -1.3 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4599 -1.3 -1.9 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5237 -1.3 -2.0 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_3039 -1.3 -5.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1660 -1.3 -2.1 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_6093 -1.3 -2.0 hypothetical protein compare
Pf6N2E2_3004 -1.3 -2.6 Prophage baseplate assembly protein V compare
Pf6N2E2_3397 -1.3 -2.1 Phage protein compare
Pf6N2E2_2447 -1.3 -3.6 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_1634 -1.3 -3.1 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_1396 -1.3 -1.5 ABC transporter, ATP-binding protein compare
Pf6N2E2_3607 -1.2 -5.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5544 -1.2 -4.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2264 -1.2 -2.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3829 -1.2 -2.8 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_737 -1.2 -1.5 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_3204 -1.2 -2.4 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_2367 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_4413 -1.2 -6.4 FIG004064: hypothetical protein compare
Pf6N2E2_624 -1.2 -2.5 hypothetical protein PA3071 compare
Pf6N2E2_5743 -1.2 -2.8 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_371 -1.2 -2.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_2218 -1.2 -2.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2681 -1.2 -1.5 3-phosphoglycerate kinase compare
Pf6N2E2_5711 -1.2 -4.2 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_3569 -1.2 -1.2 hypothetical protein compare
Pf6N2E2_1151 -1.2 -3.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_1694 -1.2 -1.1 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2211 -1.2 -4.7 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_3122 -1.1 -1.3 Chemotaxis signal transduction protein compare
Pf6N2E2_4661 -1.1 -2.2 KluA regulatory protein compare
Pf6N2E2_1081 -1.1 -1.6 probable membrane protein YPO3302 compare
Pf6N2E2_2825 -1.1 -3.7 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_1176 -1.1 -2.2 Mll2356 protein compare
Pf6N2E2_5739 -1.1 -1.2 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_1027 -1.1 -2.2 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_319 -1.1 -2.0 DUF1850 domain-containing protein compare
Pf6N2E2_42 -1.1 -2.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4372 -1.1 -2.2 FIG00460773: hypothetical protein compare
Pf6N2E2_2487 -1.1 -0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_4025 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_2300 -1.1 -2.3 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_2857 -1.1 -2.2 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_3253 -1.1 -3.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5704 -1.1 -1.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5835 -1.1 -2.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_572 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_5520 -1.1 -3.6 Sensory box histidine kinase compare
Pf6N2E2_5646 -1.1 -1.2 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_3014 -1.1 -1.6 P2-like prophage tail protein X compare
Pf6N2E2_4607 -1.1 -2.5 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_2007 -1.0 -2.2 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_4399 -1.0 -3.5 GGDEF domain/EAL domain protein compare
Pf6N2E2_1626 -1.0 -4.3 Putative ATP-binding component of a transport system compare
Pf6N2E2_6035 -1.0 -2.0 alpha/beta hydrolase fold compare
Pf6N2E2_5316 -1.0 -1.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_896 -1.0 -1.9 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_493 -1.0 -2.4 YD repeat protein compare
Pf6N2E2_1236 -1.0 -1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_3040 -1.0 -4.5 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3529 -1.0 -1.5 Toxin A compare
Pf6N2E2_3537 -1.0 -1.7 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_4059 -1.0 -1.0 DNA-binding protein HU-alpha compare
Pf6N2E2_4075 -1.0 -4.1 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_1912 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_1670 -1.0 -2.2 conserved membrane protein compare
Pf6N2E2_5017 -1.0 -3.2 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf6N2E2_1972 -1.0 -1.7 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_2880 -1.0 -1.5 FIG00959696: hypothetical protein compare
Pf6N2E2_1959 -1.0 -2.5 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_1797 -1.0 -1.7 Transcriptional regulator compare
Pf6N2E2_1211 -1.0 -1.6 Lactoylglutathione lyase compare
Pf6N2E2_4146 -1.0 -2.0 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_1343 -1.0 -2.3 Transcriptional regulator compare
Pf6N2E2_3932 -1.0 -4.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_1460 -1.0 -2.2 Epoxide hydrolase (EC 3.3.2.9) compare
Pf6N2E2_5785 -1.0 -1.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_953 -1.0 -1.2 FIG00958851: hypothetical protein compare
Pf6N2E2_2795 -1.0 -1.4 putative exported protein compare
Pf6N2E2_2106 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_3190 -0.9 -3.4 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_4570 -0.9 -2.2 Cation/multidrug efflux pump compare
Pf6N2E2_170 -0.9 -1.7 lipoprotein, putative compare
Pf6N2E2_5986 -0.9 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1032 -0.9 -1.1 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3969 -0.9 -1.0 Membrane-fusion protein compare
Pf6N2E2_1706 -0.9 -1.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_4381 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_2063 -0.9 -2.6 Predicted cobalt transporter CbtA compare
Pf6N2E2_2835 -0.9 -1.8 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_1896 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_882 -0.9 -1.7 FIG00961517: hypothetical protein compare
Pf6N2E2_5678 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_831 -0.9 -1.6 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_5841 -0.9 -0.9 GlcG protein compare
Pf6N2E2_946 -0.9 -1.1 Transcriptional regulator, LysR family compare
Pf6N2E2_2251 -0.9 -2.4 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) conserved
Pf6N2E2_2739 -0.9 -2.2 UPF0339 protein NMA1193/NMA1859 compare
Pf6N2E2_1037 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_3876 -0.9 -1.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5133 -0.9 -1.4 FIG00953980: hypothetical protein compare
Pf6N2E2_4974 -0.9 -3.9 DedA protein compare
Pf6N2E2_1656 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_4120 -0.9 -5.6 Trk system potassium uptake protein TrkA compare
Pf6N2E2_5342 -0.9 -1.4 21 kDa hemolysin precursor compare
Pf6N2E2_1288 -0.8 -1.3 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_3033 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_3635 -0.8 -1.1 FIG00953138: hypothetical protein compare
Pf6N2E2_1423 -0.8 -2.5 Gamma-aminobutyrate permease compare
Pf6N2E2_4369 -0.8 -0.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4077 -0.8 -1.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_21 -0.8 -1.8 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf6N2E2_1095 -0.8 -1.2 Opine oxidase subunit C compare
Pf6N2E2_1165 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_434 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_3081 -0.8 -3.4 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_3872 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_4367 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_817 -0.8 -3.9 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_3665 -0.8 -1.0 serine/threonine protein kinase compare
Pf6N2E2_4415 -0.8 -1.6 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_1283 -0.8 -1.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5242 -0.8 -1.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5499 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_6064 -0.8 -2.5 2-methylaconitate isomerase compare
Pf6N2E2_4584 -0.8 -1.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5006 -0.8 -2.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3247 -0.8 -3.0 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) compare
Pf6N2E2_5328 -0.8 -2.6 FIG00958649: hypothetical protein compare
Pf6N2E2_3024 -0.8 -1.7 Phage tail fibers compare
Pf6N2E2_2205 -0.8 -1.9 FIG033889: YebC paralog in Betaproteobacteria compare
Pf6N2E2_1305 -0.8 -1.3 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_160 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_3834 -0.8 -2.4 Lipoprotein NlpD compare
Pf6N2E2_1091 -0.8 -1.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_754 -0.8 -1.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5527 -0.8 -1.3 Cold shock protein CspC compare
Pf6N2E2_1450 -0.8 -1.0 FIG00960438: hypothetical protein compare
Pf6N2E2_902 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_1806 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_5842 -0.8 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_4990 -0.8 -1.5 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_2510 -0.8 -1.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5927 -0.8 -2.5 ABC-type multidrug transport system, ATPase component compare
Pf6N2E2_1012 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_5093 -0.8 -5.1 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_3830 -0.8 -2.2 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_2477 -0.8 -1.0 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_16 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_2386 -0.7 -1.4 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_377 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_4307 -0.7 -1.9 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2306 -0.7 -2.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_88 -0.7 -0.8 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Nickel (II) chloride hexahydrate across organisms