Experiment set13IT074 for Herbaspirillum seropedicae SmR1

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS16450 +3.8 2.6 colicin V production protein compare
HSERO_RS22625 +3.3 1.2 LysR family transcriptional regulator compare
HSERO_RS04860 +3.0 6.1 sugar ABC transporter permease compare
HSERO_RS09940 +2.7 1.1 peptidylprolyl isomerase compare
HSERO_RS22960 +2.6 10.0 glyoxalase compare
HSERO_RS01825 +2.0 2.0 RNA pyrophosphohydrolase compare
HSERO_RS22190 +1.9 1.0 molecular chaperone GroES compare
HSERO_RS20545 +1.9 1.6 hypothetical protein compare
HSERO_RS21765 +1.8 1.8 cell division protein compare
HSERO_RS16765 +1.8 1.2 LysR family transcriptional regulator compare
HSERO_RS17820 +1.7 1.3 Lipid A core--O-antigen ligase compare
HSERO_RS12685 +1.7 1.1 isochorismatase hydrolase compare
HSERO_RS09000 +1.7 1.3 hypothetical protein compare
HSERO_RS12690 +1.7 1.9 transcriptional regulator compare
HSERO_RS07100 +1.7 1.2 ABC transporter substrate-binding protein compare
HSERO_RS20240 +1.6 1.6 cytochrome B compare
HSERO_RS03540 +1.6 1.5 dimethyladenosine transferase compare
HSERO_RS22375 +1.5 1.5 hypothetical protein compare
HSERO_RS02610 +1.5 1.9 hypothetical protein compare
HSERO_RS12325 +1.5 9.9 arabinose ABC transporter permease compare
HSERO_RS11335 +1.4 1.1 permease compare
HSERO_RS13860 +1.4 1.3 sugar ABC transporter substrate-binding protein compare
HSERO_RS08915 +1.3 1.8 ABC transporter permease compare
HSERO_RS15345 +1.3 1.4 cytochrome BD oxidase subunit II compare
HSERO_RS03790 +1.3 3.3 hypothetical protein compare
HSERO_RS08590 +1.3 1.9 pseudouridine synthase compare
HSERO_RS16145 +1.3 1.5 leucyl/phenylalanyl-tRNA--protein transferase compare
HSERO_RS04005 +1.3 1.6 type III secretion protein compare
HSERO_RS05055 +1.2 1.2 cyclase compare
HSERO_RS03770 +1.2 5.9 type VI secretion protein compare
HSERO_RS02770 +1.2 2.5 hypothetical protein compare
HSERO_RS11995 +1.2 1.4 universal stress protein compare
HSERO_RS10160 +1.2 1.4 flagellar biosynthesis sigma factor compare
HSERO_RS00270 +1.2 1.9 hypothetical protein compare
HSERO_RS22360 +1.2 2.5 lauroyl acyltransferase compare
HSERO_RS19255 +1.2 1.7 ABC transporter compare
HSERO_RS12280 +1.2 3.1 ABC transporter permease compare
HSERO_RS06275 +1.1 1.7 metallophosphatase compare
HSERO_RS23615 +1.1 0.9 urease subunit beta compare
HSERO_RS16825 +1.1 2.2 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS01055 +1.1 1.6 bacteriophage regulatory protein compare
HSERO_RS12105 +1.1 4.7 RpiR family transcriptional regulator compare
HSERO_RS07160 +1.1 3.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS03680 +1.1 1.8 type VI secretion system protein ImpK compare
HSERO_RS20955 +1.1 1.0 thiol:disulfide interchange protein compare
HSERO_RS19585 +1.1 4.8 peptidase M61 compare
HSERO_RS08260 +1.1 2.4 hypothetical protein compare
HSERO_RS02815 +1.0 1.2 HxlR family transcriptional regulator compare
HSERO_RS22410 +1.0 1.7 alpha/beta hydrolase compare
HSERO_RS19745 +1.0 1.7 AraC family transcriptional regulator compare
HSERO_RS14690 +1.0 1.8 amino acid ABC transporter periplasmic protein compare
HSERO_RS21200 +1.0 2.2 glycosyl transferase family 1 compare
HSERO_RS06370 +1.0 1.9 aromatic compound catabolic protein compare
HSERO_RS08400 +1.0 1.7 glutathione S-transferase compare
HSERO_RS05440 +1.0 0.9 hypothetical protein compare
HSERO_RS10765 +1.0 3.6 hypothetical protein compare
HSERO_RS21215 +1.0 2.4 hypothetical protein compare
HSERO_RS21225 +0.9 5.7 hypothetical protein compare
HSERO_RS18075 +0.9 1.3 hypothetical protein compare
HSERO_RS01305 +0.9 2.0 acetate kinase compare
HSERO_RS23035 +0.9 1.9 ABC transporter permease compare
HSERO_RS19920 +0.9 1.1 protocatechuate 3,4-dioxygenase subunit beta compare
HSERO_RS15870 +0.9 1.3 metal ABC transporter substrate-binding protein compare
HSERO_RS16870 +0.9 1.4 D-alanyl-D-alanine carboxypeptidase compare
HSERO_RS16595 +0.9 2.5 hypothetical protein compare
HSERO_RS00900 +0.9 1.6 L-proline ABC transporter, ATPase component 2 (from data) compare
HSERO_RS01020 +0.9 2.4 hypothetical protein compare
HSERO_RS15490 +0.9 1.7 ABC transporter substrate-binding protein compare
HSERO_RS05165 +0.9 2.3 galactose-1-epimerase compare
HSERO_RS03915 +0.9 0.9 hypothetical protein compare
HSERO_RS13890 +0.9 5.7 LuxR family transcriptional regulator compare
HSERO_RS13850 +0.9 3.1 hypothetical protein compare
HSERO_RS18210 +0.9 1.4 hypothetical protein compare
HSERO_RS13885 +0.9 7.0 histidine kinase compare
HSERO_RS03690 +0.9 4.3 membrane protein compare
HSERO_RS22020 +0.9 5.1 membrane protein compare
HSERO_RS13675 +0.9 0.8 histidine kinase compare
HSERO_RS04015 +0.9 2.6 flagellar biosynthesis/type III secretory pathway protein compare
HSERO_RS09760 +0.9 1.1 hypothetical protein compare
HSERO_RS01210 +0.9 4.5 GntR family transcriptional regulator compare
HSERO_RS21795 +0.9 1.7 CoA-binding protein compare
HSERO_RS15160 +0.8 1.1 chemotaxis protein CheW compare
HSERO_RS04820 +0.8 4.7 C4-dicarboxylate ABC transporter compare
HSERO_RS16905 +0.8 0.7 50S ribosomal protein L21 compare
HSERO_RS06015 +0.8 1.5 hisitidine kinase compare
HSERO_RS03725 +0.8 5.4 type VI secretion protein compare
HSERO_RS15135 +0.8 2.4 diguanylate cyclase compare
HSERO_RS21790 +0.8 1.3 polyphosphate kinase compare
HSERO_RS02030 +0.8 1.6 phospholipid-binding protein compare
HSERO_RS12550 +0.8 1.7 D-lactate dehydrogenase compare
HSERO_RS17830 +0.8 1.3 rhodanese compare
HSERO_RS09210 +0.8 4.6 D-aminopeptidase compare
HSERO_RS20785 +0.8 2.3 cytochrome oxidase subunit I compare
HSERO_RS13335 +0.8 1.3 hypothetical protein compare
HSERO_RS06025 +0.8 5.0 histidine kinase compare
HSERO_RS00220 +0.8 0.9 hypothetical protein compare
HSERO_RS03685 +0.8 5.6 type VI secretion protein compare
HSERO_RS10250 +0.8 5.3 flagellar biosynthesis protein FliR compare
HSERO_RS11455 +0.8 2.0 N-formimino-L-glutamate deiminase compare
HSERO_RS21170 +0.8 2.0 5'-nucleotidase compare
HSERO_RS05890 +0.8 1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS20035 +0.8 1.5 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS01090 +0.8 1.8 hypothetical protein compare
HSERO_RS11450 +0.8 1.3 ABC transporter ATP-binding protein compare
HSERO_RS06315 +0.8 1.9 phosphate ABC transporter permease compare
HSERO_RS02100 +0.8 1.1 4-oxalocrotonate decarboxylase compare
HSERO_RS10205 +0.8 4.0 flagellar basal body rod protein FlgG compare
HSERO_RS12220 +0.8 1.1 dehydrogenase compare
HSERO_RS18750 +0.7 3.6 dehydrogenase compare
HSERO_RS10280 +0.7 1.7 flagellar basal body protein FliL compare
HSERO_RS10145 +0.7 5.4 flagellar biosynthesis protein FlhA compare
HSERO_RS16055 +0.7 0.9 cytochrome oxidase subunit I compare
HSERO_RS00955 +0.7 3.1 Tail fiber protein compare
HSERO_RS18010 +0.7 0.6 pseudouridine synthase compare
HSERO_RS22490 +0.7 1.1 diguanylate cyclase compare
HSERO_RS22385 +0.7 1.4 GMC family oxidoreductase compare
HSERO_RS03675 +0.7 4.9 type VI secretion protein compare
HSERO_RS10295 +0.7 6.4 ATP synthase compare
HSERO_RS07565 +0.7 1.1 acyl-CoA dehydrogenase compare
HSERO_RS03715 +0.7 2.9 type VI secretion protein compare
HSERO_RS11980 +0.7 0.8 hypothetical protein compare
HSERO_RS02985 +0.7 1.7 transcriptional regulator compare
HSERO_RS13520 +0.7 1.0 hypothetical protein compare
HSERO_RS07965 +0.7 2.5 cell shape determination protein CcmA compare
HSERO_RS11185 +0.7 1.2 amino acid dehydrogenase compare
HSERO_RS21265 +0.7 1.3 transcriptional regulator compare
HSERO_RS14425 +0.7 1.2 hypothetical protein compare
HSERO_RS18055 +0.7 2.5 histidine kinase compare
HSERO_RS12355 +0.7 1.0 hypothetical protein compare
HSERO_RS21615 +0.7 4.1 ABC transporter substrate-binding protein compare
HSERO_RS21205 +0.7 3.2 hypothetical protein compare
HSERO_RS10120 +0.7 1.5 chemotaxis protein CheD compare
HSERO_RS20085 +0.7 2.1 methyl-accepting chemotaxis protein compare
HSERO_RS14030 +0.7 1.1 hypothetical protein compare
HSERO_RS23435 +0.7 1.3 MerR family transcriptional regulator compare
HSERO_RS22090 +0.7 1.1 hypothetical protein compare
HSERO_RS22730 +0.7 2.7 sugar ABC transporter substrate-binding protein compare
HSERO_RS02790 +0.7 2.8 hypothetical protein compare
HSERO_RS03800 +0.7 2.2 hypothetical protein compare
HSERO_RS03495 +0.7 1.4 NAD(P) transhydrogenase subunit beta compare
HSERO_RS02245 +0.7 0.9 hypothetical protein compare
HSERO_RS14050 +0.7 2.0 CoA transferase compare
HSERO_RS00135 +0.7 1.2 hypothetical protein compare
HSERO_RS23905 +0.7 3.5 cytochrome C550 compare
HSERO_RS19305 +0.7 0.9 hypothetical protein compare
HSERO_RS19780 +0.7 2.4 chemotaxis protein CheY compare
HSERO_RS06860 +0.7 1.3 AraC family transcriptional regulator compare
HSERO_RS01535 +0.7 2.8 phosphohydrolase with GAF sensor compare
HSERO_RS03735 +0.7 4.1 type VI secretion protein compare
HSERO_RS14075 +0.7 1.4 3-oxoacyl-ACP reductase compare
HSERO_RS13970 +0.7 1.8 diguanylate cyclase compare
HSERO_RS17095 +0.7 0.9 antitoxin compare
HSERO_RS04135 +0.7 0.8 amidohydrolase compare
HSERO_RS21895 +0.7 2.1 TonB-dependent receptor compare
HSERO_RS00235 +0.7 1.6 MFS transporter compare
HSERO_RS03930 +0.7 1.4 hypothetical protein compare
HSERO_RS21210 +0.7 2.4 membrane protein compare
HSERO_RS04955 +0.7 1.5 LysR family transcriptional regulator compare
HSERO_RS04450 +0.7 1.9 hypothetical protein compare
HSERO_RS22045 +0.7 1.1 UDP-glucose 4-epimerase compare
HSERO_RS07465 +0.7 1.6 alpha/beta hydrolase compare
HSERO_RS14985 +0.7 3.8 transcriptional regulator compare
HSERO_RS12540 +0.7 1.7 hemerythrin compare
HSERO_RS05725 +0.7 1.4 methyl-accepting chemotaxis protein compare
HSERO_RS08185 +0.7 1.5 sulfate transporter subunit compare
HSERO_RS15730 +0.6 1.4 hypothetical protein compare
HSERO_RS06080 +0.6 1.5 hypothetical protein compare
HSERO_RS17840 +0.6 1.5 quercetin 2,3-dioxygenase compare
HSERO_RS22340 +0.6 2.4 allophanate hydrolase compare
HSERO_RS01960 +0.6 1.3 hypothetical protein compare
HSERO_RS15235 +0.6 2.4 MFS transporter compare
HSERO_RS03695 +0.6 3.2 hypothetical protein compare
HSERO_RS23645 +0.6 1.3 glycerol-3-phosphate dehydrogenase compare
HSERO_RS11555 +0.6 2.9 cytochrome c1 protein compare
HSERO_RS00275 +0.6 2.7 methylated-DNA--protein-cysteine methyltransferase compare
HSERO_RS22725 +0.6 2.0 transcriptional regulator compare
HSERO_RS15545 +0.6 1.0 membrane protein compare
HSERO_RS03775 +0.6 4.4 cell envelope biogenesis protein OmpA compare
HSERO_RS13175 +0.6 1.4 urea ABC transporter ATP-binding protein compare
HSERO_RS12095 +0.6 1.8 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
HSERO_RS07725 +0.6 3.5 membrane protein compare
HSERO_RS20795 +0.6 1.9 membrane protein compare
HSERO_RS12420 +0.6 2.2 transcriptional regulator compare
HSERO_RS04060 +0.6 1.1 type II secretion system protein F compare
HSERO_RS21220 +0.6 4.4 hypothetical protein compare
HSERO_RS05385 +0.6 1.2 prevent-host-death protein compare
HSERO_RS15875 +0.6 1.0 zinc ABC transporter permease compare
HSERO_RS02110 +0.6 0.9 hypothetical protein compare
HSERO_RS21370 +0.6 1.0 dihydrolipoamide acyltransferase compare
HSERO_RS19875 +0.6 2.8 3-oxoacyl-ACP reductase compare
HSERO_RS23545 +0.6 1.8 sodium transporter compare
HSERO_RS02000 +0.6 2.0 magnesium transporter compare
HSERO_RS15670 +0.6 1.8 major facilitator transporter compare
HSERO_RS12520 +0.6 1.7 hypothetical protein compare
HSERO_RS18425 +0.6 1.9 prephenate dehydrogenase compare
HSERO_RS22060 +0.6 1.0 kinase compare
HSERO_RS11690 +0.6 3.2 serine O-acetyltransferase compare
HSERO_RS06365 +0.6 0.5 hypothetical protein compare
HSERO_RS07070 +0.6 0.7 hypothetical protein compare
HSERO_RS09225 +0.6 2.0 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment