Experiment set13IT053 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 0.5x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS18950 -7.7 -3.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS20355 -7.1 -3.1 colicin V production protein compare
BWI76_RS04250 -6.8 -7.8 homoserine kinase compare
BWI76_RS18940 -6.3 -4.8 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS01115 -6.2 -2.6 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS25700 -5.9 -5.8 heavy metal-responsive transcriptional regulator compare
BWI76_RS18920 -5.9 -3.0 ATP phosphoribosyltransferase compare
BWI76_RS18955 -5.8 -4.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS26425 -5.8 -8.8 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS04255 -5.7 -11.0 threonine synthase compare
BWI76_RS17975 -5.5 -3.3 tail-specific protease compare
BWI76_RS02995 -5.5 -7.8 aspartate carbamoyltransferase compare
BWI76_RS00875 -5.3 -3.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS04465 -5.3 -6.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS21265 -5.3 -18.1 phosphoribosylformylglycinamidine synthase compare
BWI76_RS07065 -5.2 -7.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS07070 -5.1 -3.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS00835 -5.0 -16.4 phosphoenolpyruvate carboxylase compare
BWI76_RS20350 -5.0 -6.6 amidophosphoribosyltransferase compare
BWI76_RS18925 -5.0 -7.0 histidinol dehydrogenase compare
BWI76_RS26455 -4.8 -1.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS04245 -4.8 -17.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS08385 -4.8 -3.0 citrate (Si)-synthase compare
BWI76_RS11965 -4.8 -4.7 orotidine-5'-phosphate decarboxylase compare
BWI76_RS11840 -4.8 -3.9 tryptophan synthase subunit alpha compare
BWI76_RS18935 -4.7 -7.3 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS00855 -4.7 -10.1 argininosuccinate lyase compare
BWI76_RS26460 -4.7 -4.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS11855 -4.6 -8.2 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS11860 -4.6 -9.1 anthranilate synthase component I compare
BWI76_RS23265 -4.6 -1.6 hypothetical protein compare
BWI76_RS01610 -4.6 -9.8 phosphoribosylamine--glycine ligase compare
BWI76_RS04470 -4.6 -10.6 carbamoyl phosphate synthase large subunit compare
BWI76_RS23220 -4.5 -7.4 amino-acid N-acetyltransferase compare
BWI76_RS00845 -4.5 -12.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS01615 -4.5 -10.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS21685 -4.4 -1.1 hypothetical protein compare
BWI76_RS00850 -4.4 -8.6 acetylglutamate kinase compare
BWI76_RS04240 -4.4 -1.4 thr operon leader peptide compare
BWI76_RS20965 -4.4 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS19840 -4.4 -1.1 hypothetical protein compare
BWI76_RS21350 -4.4 -3.9 anti-RNA polymerase sigma factor SigE compare
BWI76_RS20390 -4.4 -3.8 erythronate-4-phosphate dehydrogenase compare
BWI76_RS25115 -4.3 -6.9 argininosuccinate synthase compare
BWI76_RS18930 -4.3 -3.2 histidinol-phosphate transaminase compare
BWI76_RS27385 -4.3 -6.6 orotate phosphoribosyltransferase compare
BWI76_RS23365 -4.3 -3.3 LysR family transcriptional regulator compare
BWI76_RS08525 -4.3 -1.8 colicin transporter compare
BWI76_RS16965 -4.2 -2.1 murein lipoprotein compare
BWI76_RS00990 -4.2 -13.4 ketol-acid reductoisomerase compare
BWI76_RS05260 -4.2 -1.0 chaperone compare
BWI76_RS05840 -4.1 -2.7 glutamate 5-kinase compare
BWI76_RS11850 -4.1 -10.2 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS05015 -4.1 -2.0 transcriptional regulator compare
BWI76_RS08520 -4.0 -1.7 colicin transporter TolQ compare
BWI76_RS10745 -4.0 -1.0 hypothetical protein compare
BWI76_RS11845 -4.0 -1.6 tryptophan synthase subunit beta compare
BWI76_RS01655 -4.0 -9.0 homoserine O-succinyltransferase compare
BWI76_RS09760 -4.0 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS00975 -4.0 -10.7 dihydroxy-acid dehydratase compare
BWI76_RS10990 -3.9 -1.6 dihydroorotase compare
BWI76_RS06525 -3.9 -3.5 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS26390 -3.9 -9.1 cell division protein FtsX compare
BWI76_RS09910 -3.9 -13.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS26395 -3.9 -5.4 cell division protein FtsE compare
BWI76_RS00805 -3.8 -6.0 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS20895 -3.8 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS08580 -3.8 -4.2 quinolinate synthetase compare
BWI76_RS24100 -3.8 -4.3 YggS family pyridoxal phosphate enzyme compare
BWI76_RS08535 -3.8 -1.6 translocation protein TolB compare
BWI76_RS00965 -3.7 -0.9 acetolactate synthase 2 small subunit compare
BWI76_RS03010 -3.7 -9.6 ornithine carbamoyltransferase compare
BWI76_RS00980 -3.7 -12.7 PLP-dependent threonine dehydratase compare
BWI76_RS27390 -3.7 -4.1 ribonuclease PH compare
BWI76_RS17980 -3.7 -3.4 RNA chaperone ProQ compare
BWI76_RS21070 -3.7 -1.6 outer membrane protein assembly factor BamB compare
BWI76_RS04160 -3.7 -3.3 phosphoserine phosphatase compare
BWI76_RS09645 -3.6 -0.9 thioredoxin-disulfide reductase compare
BWI76_RS25645 -3.6 -6.4 shikimate dehydrogenase compare
BWI76_RS04670 -3.6 -8.4 3-isopropylmalate dehydratase large subunit compare
BWI76_RS25335 -3.6 -1.5 stringent starvation protein A compare
BWI76_RS06680 -3.5 -1.3 hypothetical protein compare
BWI76_RS00785 -3.5 -8.1 cystathionine gamma-synthase compare
BWI76_RS14320 -3.5 -1.9 hypothetical protein compare
BWI76_RS24340 -3.4 -5.9 two-component sensor histidine kinase compare
BWI76_RS04665 -3.4 -19.4 3-isopropylmalate dehydratase small subunit compare
BWI76_RS24285 -3.4 -7.3 cystathionine beta-lyase compare
BWI76_RS08495 -3.4 -4.0 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS04675 -3.4 -8.4 3-isopropylmalate dehydrogenase compare
BWI76_RS26000 -3.4 -7.6 aspartate aminotransferase family protein compare
BWI76_RS21310 -3.4 -0.8 DNA repair protein RecO compare
BWI76_RS01095 -3.4 -2.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS26665 -3.3 -2.4 DNA-binding response regulator compare
BWI76_RS08040 -3.3 -2.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS08530 -3.3 -1.2 protein TolA compare
BWI76_RS20715 -3.3 -1.7 RpoE-regulated lipoprotein compare
BWI76_RS13560 -3.3 -0.8 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS01125 -3.3 -5.8 4-alpha-L-fucosyltransferase compare
BWI76_RS01110 -3.3 -4.9 TDP-fucosamine acetyltransferase compare
BWI76_RS21475 -3.2 -3.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS16490 -3.2 -1.4 glutaredoxin compare
BWI76_RS23920 -3.2 -1.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS01080 -3.2 -8.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS22765 -3.2 -8.9 sulfite reductase subunit alpha compare
BWI76_RS06535 -3.1 -2.1 endopeptidase La compare
BWI76_RS08760 -3.1 -8.0 biotin synthase compare
BWI76_RS01135 -3.1 -5.6 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS26570 -3.1 -2.0 anion permease compare
BWI76_RS09755 -3.1 -3.0 phosphoserine transaminase compare
BWI76_RS21465 -3.0 -3.7 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS02735 -3.0 -3.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS22760 -3.0 -6.2 sulfite reductase subunit beta compare
BWI76_RS26730 -3.0 -5.4 inner membrane protein YhjD compare
BWI76_RS06530 -3.0 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS00345 -3.0 -3.9 protein disulfide oxidoreductase DsbA compare
BWI76_RS26670 -2.9 -7.8 two-component sensor histidine kinase compare
BWI76_RS23690 -2.9 -2.1 putative glyoxalase/bleomycin resistance protein/dioxygenase compare
BWI76_RS04685 -2.9 -9.8 putative leucine operon leader peptide compare
BWI76_RS26620 -2.9 -0.7 Fe-S biogenesis protein NfuA compare
BWI76_RS21360 -2.9 -11.5 L-aspartate oxidase compare
BWI76_RS02550 -2.9 -4.2 protease modulator HflC compare
BWI76_RS04645 -2.9 -3.4 3-dehydroquinase compare
BWI76_RS22755 -2.9 -3.4 phosphoadenosine phosphosulfate reductase compare
BWI76_RS01800 -2.9 -1.9 glucose-6-phosphate isomerase compare
BWI76_RS25300 -2.9 -2.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS24605 -2.9 -4.7 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS04845 -2.8 -8.1 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS04990 -2.8 -5.9 pantoate--beta-alanine ligase compare
BWI76_RS23360 -2.8 -1.3 diaminopimelate decarboxylase compare
BWI76_RS09615 -2.8 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS04680 -2.8 -9.5 2-isopropylmalate synthase compare
BWI76_RS21165 -2.7 -1.3 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS09970 -2.6 -0.8 porin OmpA compare
BWI76_RS24600 -2.5 -1.7 dihydroxyacetone kinase compare
BWI76_RS16485 -2.5 -0.9 ribonuclease T compare
BWI76_RS04995 -2.5 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
BWI76_RS01210 -2.5 -1.0 tyrosine recombinase XerC compare
BWI76_RS22805 -2.5 -7.7 GTP diphosphokinase compare
BWI76_RS07465 -2.5 -0.8 TetR family transcriptional regulator compare
BWI76_RS10930 -2.5 -5.9 glucan biosynthesis protein G compare
BWI76_RS22690 -2.5 -1.3 adenylyl-sulfate kinase compare
BWI76_RS08210 -2.5 -0.9 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS09655 -2.5 -5.0 leucine-responsive regulatory protein compare
BWI76_RS04985 -2.5 -5.0 aspartate 1-decarboxylase compare
BWI76_RS19770 -2.5 -1.2 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS11170 -2.4 -1.0 hypothetical protein compare
BWI76_RS05835 -2.4 -1.6 gamma-glutamyl-phosphate reductase compare
BWI76_RS27235 -2.4 -9.6 murein hydrolase activator EnvC compare
BWI76_RS21115 -2.4 -1.9 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS10935 -2.4 -4.4 glucan biosynthesis glucosyltransferase H compare
BWI76_RS16425 -2.4 -2.2 hypothetical protein compare
BWI76_RS19905 -2.4 -3.8 OmpK36 porin compare
BWI76_RS16895 -2.4 -1.4 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS24900 -2.4 -1.1 DeoR family transcriptional regulator compare
BWI76_RS21345 -2.4 -2.3 sigma-E factor regulatory protein RseB compare
BWI76_RS11150 -2.3 -1.3 membrane protein compare
BWI76_RS27440 -2.3 -1.5 DNA helicase RecG compare
BWI76_RS16920 -2.3 -1.1 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS10950 -2.2 -2.1 MFS transporter compare
BWI76_RS24885 -2.2 -0.9 PTS galactitol transporter subunit IIB compare
BWI76_RS00400 -2.2 -0.9 glutamine synthetase compare
BWI76_RS26470 -2.2 -4.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS00760 -2.2 -4.9 cell division protein FtsN compare
BWI76_RS23985 -2.2 -5.0 erythrose-4-phosphate dehydrogenase compare
BWI76_RS25320 -2.2 -7.8 glutamate synthase compare
BWI76_RS25315 -2.2 -9.9 glutamate synthase large subunit compare
BWI76_RS25960 -2.2 -3.1 NUDIX hydrolase compare
BWI76_RS16635 -2.1 -3.2 carbonate dehydratase compare
BWI76_RS20640 -2.1 -3.4 cysteine synthase A compare
BWI76_RS24765 -2.1 -2.6 membrane protein compare
BWI76_RS13920 -2.1 -6.0 magnesium-translocating P-type ATPase compare
BWI76_RS21370 -2.1 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS25060 -2.1 -4.9 lipoprotein NlpI compare
BWI76_RS11255 -2.1 -1.3 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS01275 -2.1 -7.3 LysR family transcriptional regulator compare
BWI76_RS05120 -2.1 -5.2 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS24580 -2.0 -5.1 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS01090 -2.0 -3.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS01900 -2.0 -4.6 tRNA-dihydrouridine synthase A compare
BWI76_RS09730 -2.0 -0.7 pyruvate formate lyase 1-activating protein compare
BWI76_RS00355 -2.0 -1.6 DNA polymerase I compare
BWI76_RS27450 -2.0 -5.1 ferredoxin--NADP(+) reductase compare
BWI76_RS04525 -2.0 -1.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS17720 -2.0 -0.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS09335 -1.9 -0.8 baseplate assembly protein W compare
BWI76_RS15965 -1.9 -4.6 MFS transporter compare
BWI76_RS00440 -1.9 -1.1 CopG family transcriptional regulator compare
BWI76_RS08765 -1.9 -2.5 8-amino-7-oxononanoate synthase compare
BWI76_RS25065 -1.9 -3.1 polyribonucleotide nucleotidyltransferase compare
BWI76_RS00960 -1.9 -5.7 acetolactate synthase 2 catalytic subunit compare
BWI76_RS01220 -1.9 -4.0 DNA-dependent helicase II compare
BWI76_RS12090 -1.9 -1.0 HNH endonuclease compare
BWI76_RS12170 -1.8 -1.5 hypothetical protein compare
BWI76_RS01170 -1.8 -2.8 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS01190 -1.8 -1.2 iron donor protein CyaY compare
BWI76_RS15635 -1.8 -5.0 hypothetical protein compare
BWI76_RS15110 -1.8 -4.3 putative excinuclease ABC subunit A compare
BWI76_RS24385 -1.8 -4.6 phosphodiesterase compare
BWI76_RS13820 -1.8 -1.3 hypothetical protein compare
BWI76_RS07115 -1.8 -5.5 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms