Experiment set13IT049 for Pseudomonas putida KT2440

Compare to:

Defined media with Supernatant; Paenibacillus sp. UNCCL52 spent media 0.5x and Ferric chloride 1 uM

200 most important genes:

  gene name fitness t score description  
PP_4723 -4.9 -11.3 Carbamoyl-phosphate synthase large chain compare
PP_4724 -4.6 -6.3 Carbamoyl-phosphate synthase small chain compare
PP_4999 -4.4 -4.2 dihydroorotase-like protein compare
PP_0691 -4.0 -6.8 Glutamate 5-kinase compare
PP_3999 -3.9 -10.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2000 -3.8 -4.4 amidophosphoribosyl transferase compare
PP_4909 -3.6 -7.8 phosphoserine phosphatase compare
PP_2371 -3.5 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_0393 -3.3 -5.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1654 -2.7 -5.2 cysteine synthase B compare
PP_5155 -2.5 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1237 -2.4 -3.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0339 -2.1 -6.2 Pyruvate dehydrogenase E1 component compare
PP_0164 -2.1 -4.5 conserved protein of unknown function compare
PP_2414 -2.0 -2.1 conserved exported protein of unknown function compare
PP_2328 -2.0 -4.9 Phosphoadenosine phosphosulfate reductase compare
PP_5393 -1.9 -2.0 putative metal-binding chaperone compare
PP_2370 -1.9 -2.0 conserved protein of unknown function compare
PP_0719 -1.8 -2.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1986 -1.8 -2.6 3-isopropylmalate dehydratase small subunit compare
PP_1783 -1.8 -2.8 dTDP-glucose pyrophosphorylase compare
PP_1088 -1.8 -9.6 Argininosuccinate synthase compare
PP_4271 -1.6 -1.3 conserved protein of unknown function compare
PP_5014 -1.6 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0290 -1.5 -5.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1022 -1.5 -5.2 glucose 6-phosphate-1-dehydrogenase compare
PP_1664 -1.5 -4.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4262 -1.4 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1985 -1.4 -3.9 3-isopropylmalate dehydratase large subunit compare
PP_5185 -1.4 -5.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1988 -1.4 -6.9 3-isopropylmalate dehydrogenase compare
PP_0035 -1.4 -2.5 putative bactoprenol-linked glycose transferase compare
PP_2403 -1.3 -2.1 Chemotaxis protein CheY compare
PP_5015 -1.3 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0184 -1.3 -5.0 Argininosuccinate lyase compare
PP_0292 -1.3 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4808 -1.2 -2.3 23S rRNA m3psi1915 methyltransferase compare
PP_0760 -1.2 -4.4 conserved membrane protein of unknown function compare
PP_4700 -1.2 -2.7 pantothenate synthetase compare
PP_5350 -1.2 -2.9 Transcriptional regulator, RpiR family compare
PP_5289 -1.2 -3.4 Acetylglutamate kinase compare
PP_1319 -1.2 -4.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4778 -1.2 -3.6 23S rRNA pseudouridine 2457 synthase compare
PP_1362 -1.2 -3.6 pyruvate kinase II compare
PP_1215 -1.1 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_3511 -1.1 -4.4 Branched-chain-amino-acid aminotransferase compare
PP_0293 -1.1 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4296 -1.1 -2.0 conserved exported protein of unknown function compare
PP_1317 -1.1 -3.4 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5473 -1.1 -2.6 putative transcriptional regulator, LuxR family compare
PP_0289 -1.1 -4.0 Imidazoleglycerol-phosphate dehydratase compare
PP_3052 -1.1 -1.0 conserved protein of unknown function compare
PP_0965 -1.1 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0082 -1.1 -3.5 tryptophan synthase alpha chain compare
PP_0291 -1.1 -2.4 conserved protein of unknown function compare
PP_4890 -1.1 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_4253 -1.0 -2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_0966 -1.0 -5.1 Histidinol dehydrogenase compare
PP_1568 -1.0 -1.4 conserved protein of unknown function compare
PP_1079 -1.0 -3.3 Ornithine carbamoyltransferase compare
PP_1658 -1.0 -3.1 conserved protein of unknown function compare
PP_2028 -1.0 -4.7 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_0967 -1.0 -5.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5654 -1.0 -1.6 putative phosphotriesterase compare
PP_5095 -1.0 -1.4 pyrroline-5-carboxylate reductase compare
PP_4680 -1.0 -6.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1713 -1.0 -2.1 Transcriptional regulator PcaQ compare
PP_5075 -1.0 -5.7 glutamate synthase (NADPH) beta subunit compare
PP_5076 -0.9 -7.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_5128 -0.9 -5.0 Dihydroxy-acid dehydratase compare
PP_4223 -0.9 -0.8 diaminobutyrate-2-oxoglutarate transaminase compare
PP_2402 -0.9 -1.8 putative Sensor histidine kinase compare
PP_5324 -0.9 -1.9 Response regulator compare
PP_3539 -0.9 -2.7 putative Transcriptional regulator compare
PP_2001 -0.9 -4.3 O-succinylhomoserine sulfhydrylase compare
PP_2650 -0.9 -1.2 putative 4-hydroxybutyrate dehydrogenase compare
PP_5201 -0.9 -1.7 conserved protein of unknown function, UPF0149 family compare
PP_1554 -0.9 -2.7 conserved protein of unknown function compare
PP_3443 -0.9 -4.7 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_3110 -0.9 -2.1 protein of unknown function compare
PP_1428 -0.9 -1.6 Sigma factor AlgU negative regulatory protein compare
PP_0001 -0.9 -2.1 probable chromosome-partitioning protein compare
PP_t12 -0.9 -1.1 tRNA-Thr compare
PP_5583 -0.9 -2.1 conserved protein of unknown function compare
PP_2581 -0.9 -1.1 conserved protein of unknown function compare
PP_1995 -0.8 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4004 -0.8 -2.1 DNA translocase FtsK compare
PP_4917 -0.8 -3.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2525 -0.8 -2.2 conserved protein of unknown function compare
PP_4880 -0.8 -4.6 exoribonuclease R compare
PP_2088 -0.8 -1.6 RNA polymerase sigma factor SigX compare
PP_2030 -0.8 -3.5 conserved protein of unknown function compare
PP_1629 -0.8 -3.3 Protein RecA compare
PP_1204 -0.8 -4.1 putative Lipoprotein compare
PP_1318 -0.8 -4.1 Cytochrome b compare
PP_0508 -0.8 -1.8 conserved exported protein of unknown function compare
PP_2568 -0.8 -1.2 Ring-cleaving dioxygenase compare
PP_4066 -0.8 -2.0 methylglutaconyl-CoA hydratase compare
PP_4859 -0.8 -2.3 Transcriptional regulator, TetR family compare
PP_0377 -0.8 -1.3 coenzyme PQQ synthesis protein D compare
PP_4251 -0.8 -2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_4722 -0.8 -2.5 Transcription elongation factor GreA compare
PP_5098 -0.8 -3.4 methionine biosynthesis protein MetW compare
PP_5331 -0.8 -1.4 Long-chain acyl-CoA thioester hydrolase compare
PP_2903 -0.8 -1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4678 -0.7 -5.2 Ketol-acid reductoisomerase compare
PP_1186 -0.7 -1.5 two component system DNA-binding transcriptional dual regulator compare
PP_5445 -0.7 -1.0 conserved protein of unknown function compare
PP_5346 -0.7 -3.2 pyruvate carboxylase subunit B compare
PP_5525 -0.7 -1.9 conserved exported protein of unknown function compare
PP_0984 -0.7 -3.0 conserved membrane protein of unknown function compare
PP_0683 -0.7 -1.8 conserved protein of unknown function compare
PP_5446 -0.7 -3.2 protein of unknown function compare
PP_0422 -0.7 -2.9 Indole-3-glycerol phosphate synthase compare
PP_5097 -0.7 -4.9 homoserine O-acetyltransferase compare
PP_1697 -0.7 -1.8 transcriptional regulator, GntR family compare
PP_4824 -0.7 -3.4 Sensor histidine kinase/response regulator compare
PP_4985 -0.7 -2.2 16S rRNA m3U1498 methyltransferase compare
PP_4925 -0.7 -2.3 conserved protein of unknown function compare
PP_0666 -0.7 -2.5 conserved protein of unknown function compare
PP_0833 -0.7 -1.2 queuine tRNA-ribosyltransferase compare
PP_1066 -0.7 -2.4 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4260 -0.7 -2.8 conserved protein of unknown function compare
PP_5216 -0.7 -1.2 exopolyphosphatase compare
PP_4957 -0.7 -2.3 conserved protein of unknown function compare
PP_0909 -0.7 -3.8 conserved exported protein of unknown function compare
PP_5598 -0.7 -2.3 conserved protein of unknown function compare
PP_2327 -0.7 -2.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5495 -0.7 -1.5 protein of unknown function compare
PP_3341 -0.7 -3.4 nickel-responsive regulator compare
PP_2302 -0.7 -3.0 DNA-binding, ATP-dependent protease compare
PP_5644 -0.7 -1.8 conserved membrane protein of unknown function compare
PP_0880 -0.7 -1.5 dipeptide ABC transporter - putative membrane subunit compare
PP_5028 -0.7 -3.0 proline iminopeptidase compare
PP_2055 -0.7 -2.1 putative isomerase compare
PP_1025 -0.7 -4.2 2-isopropylmalate synthase compare
PP_0789 -0.7 -2.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2029 -0.7 -2.3 von Willebrand factor type A domain protein compare
PP_2309 -0.7 -0.9 conserved protein of unknown function compare
PP_4320 -0.7 -2.5 cytochrome c-type biogenesis protein compare
PP_4247 -0.7 -1.2 Exonuclease compare
PP_0120 -0.7 -3.0 putative zinc ABC transporter compare
PP_5176 -0.7 -1.8 conserved protein of unknown function compare
PP_0834 -0.7 -1.2 Sec translocation complex subunit YajC compare
PP_2947 -0.7 -2.6 putative Transcriptional regulator MvaT, P16 subunit compare
PP_5265 -0.6 -2.1 Xanthine phosphoribosyltransferase compare
PP_3740 -0.6 -4.1 Major facilitator family transporter compare
PP_4687 -0.6 -1.7 Hemin import ATP-binding protein HmuV compare
PP_1355 -0.6 -4.2 Muropeptide permease AmpG compare
PP_4250 -0.6 -4.2 cytochrome c oxidase subunit I, cbb3-type compare
PP_4787 -0.6 -1.6 putative protein with nucleoside triphosphate hydrolase domain compare
PP_2456 -0.6 -1.9 D-ribose ABC transporter - permease subunit compare
PP_4207 -0.6 -1.5 conserved protein of unknown function compare
PP_1309 -0.6 -2.9 conserved exported protein of unknown function compare
PP_3532 -0.6 -1.2 Transcriptional regulator, AsnC family compare
PP_1833 -0.6 -1.8 conserved protein of unknown function compare
PP_3765 -0.6 -2.9 H-NS family protein MvaT compare
PP_4120 -0.6 -1.6 NADH-quinone oxidoreductase subunit B compare
PP_2196 -0.6 -1.5 agmatinase compare
PP_3560 -0.6 -1.8 Transcriptional regulator, LysR family compare
PP_0083 -0.6 -2.3 tryptophan synthase beta chain compare
PP_0630 -0.6 -0.8 DNA gyrase inhibitor YacG compare
PP_1742 -0.6 -1.4 conserved inner membrane protein of unknown function compare
PP_0949 -0.6 -3.2 putative ATP-binding protein UPF0042 compare
PP_4424 -0.6 -1.6 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2795 -0.6 -2.0 AMP-binding domain protein compare
PP_4997 -0.6 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4129 -0.6 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4546 -0.6 -2.2 ATP-dependent helicase HrpA compare
PP_0080 -0.6 -2.2 conserved protein of unknown function compare
PP_2695 -0.6 -2.3 Transcriptional regulator, LysR family compare
PP_0781 -0.6 -1.7 conserved protein of unknown function compare
PP_5579 -0.6 -2.5 conserved protein of unknown function compare
PP_0640 -0.6 -1.7 conserved protein of unknown function compare
PP_4227 -0.6 -1.1 conserved protein of unknown function compare
PP_0575 -0.6 -2.1 conserved membrane protein of unknown function compare
PP_2442 -0.6 -1.5 conserved protein of unknown function, DUF480 family compare
PP_3312 -0.6 -1.0 putative Heat shock protein compare
PP_3892 -0.6 -0.9 conserved protein of unknown function compare
PP_2681 -0.6 -1.2 coenzyme PQQ synthesis protein D compare
PP_3899 -0.6 -0.8 conserved protein of unknown function, hicB family compare
PP_0090 -0.6 -1.9 conserved exported protein of unknown function compare
PP_3726 -0.6 -0.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_1824 -0.6 -0.9 Smr domain protein compare
PP_2814 -0.6 -2.0 conserved protein of unknown function compare
PP_5549 -0.6 -2.3 conserved protein of unknown function compare
PP_1813 -0.6 -1.3 ComEA-related protein compare
PP_5045 -0.6 -1.9 tRNA sulfurtransferase compare
PP_0908 -0.6 -3.0 conserved exported protein of unknown function compare
PP_3825 -0.6 -1.5 conserved protein of unknown function compare
PP_5701 -0.6 -1.0 conserved protein of unknown function compare
PP_3363 -0.6 -1.8 putative thymidylate kinase compare
PP_2147 -0.6 -1.2 conserved exported protein of unknown function compare
PP_3874 -0.6 -1.6 conserved protein of unknown function compare
PP_5052 -0.6 -2.1 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_5191 -0.6 -1.7 conserved exported protein of unknown function compare
PP_3862 -0.6 -2.2 putative Phage assembly protein compare
PP_5027 -0.5 -1.2 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1147 -0.5 -2.6 conserved protein of unknown function compare
PP_0125 -0.5 -2.0 putative cytochrome c-type protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in supernatant experiments

For supernatant Supernatant; Paenibacillus sp. UNCCL52 spent media across organisms