Experiment set13IT045 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS23895 +2.1 2.3 Xaa-Pro aminopeptidase compare
BWI76_RS15350 +1.7 1.6 hypothetical protein compare
BWI76_RS21130 +1.6 2.8 Fe-S assembly protein IscX compare
BWI76_RS26095 +1.6 0.8 shikimate kinase compare
BWI76_RS11815 +1.6 1.8 hypothetical protein compare
BWI76_RS18755 +1.5 1.5 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS18240 +1.5 2.6 L-arabinose ABC transporter permease AraH compare
BWI76_RS07855 +1.4 3.6 PucR family transcriptional regulator compare
BWI76_RS13170 +1.4 1.6 methyltransferase compare
BWI76_RS05075 +1.4 0.6 type II secretion system protein GspG compare
BWI76_RS25425 +1.4 0.9 arginine repressor compare
BWI76_RS02815 +1.4 1.5 fructose-bisphosphatase class I compare
BWI76_RS25925 +1.4 2.7 hypothetical protein compare
BWI76_RS13420 +1.4 1.8 ABC transporter permease compare
BWI76_RS25000 +1.4 1.7 malonate decarboxylase acyl carrier protein compare
BWI76_RS15845 +1.3 1.0 hypothetical protein compare
BWI76_RS01190 +1.3 1.1 iron donor protein CyaY compare
BWI76_RS17400 +1.3 1.5 transporter compare
BWI76_RS11810 +1.3 2.2 outer membrane protein OmpW compare
BWI76_RS11675 +1.2 2.6 arginine N-succinyltransferase compare
BWI76_RS13805 +1.2 3.4 inorganic diphosphatase compare
BWI76_RS25375 +1.2 1.4 hypothetical protein compare
BWI76_RS01675 +1.2 2.5 putative cytoplasmic protein compare
BWI76_RS11125 +1.2 1.6 metal-dependent hydrolase compare
BWI76_RS18770 +1.2 1.1 DNA gyrase inhibitor compare
BWI76_RS16455 +1.2 2.0 superoxide dismutase compare
BWI76_RS12550 +1.1 2.3 hypothetical protein compare
BWI76_RS14770 +1.1 0.8 PTS IIA 2 domain protein compare
BWI76_RS12100 +1.1 4.1 replication protein P compare
BWI76_RS14980 +1.1 1.0 hypothetical protein compare
BWI76_RS17665 +1.1 3.0 proteasome-type protease compare
BWI76_RS25865 +1.1 4.2 ferredoxin compare
BWI76_RS09450 +1.1 2.3 30S ribosomal protein S6--L-glutamate ligase compare
BWI76_RS13300 +1.1 3.6 carboxylesterase compare
BWI76_RS23560 +1.1 1.1 hypothetical protein compare
BWI76_RS13215 +1.1 1.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS05965 +1.1 1.0 hypothetical protein compare
BWI76_RS24035 +1.1 1.9 hypothetical protein compare
BWI76_RS02225 +1.1 1.6 phosphonate C-P lyase system protein PhnG compare
BWI76_RS09615 +1.0 0.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS16675 +1.0 1.9 ABC transporter compare
BWI76_RS08820 +1.0 2.9 molybdenum cofactor biosynthesis protein compare
BWI76_RS06485 +1.0 1.5 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS12605 +1.0 1.7 hypothetical protein compare
BWI76_RS13330 +1.0 0.9 tellurite resistance methyltransferase TehB compare
BWI76_RS06665 +1.0 2.1 membrane protein compare
BWI76_RS15235 +1.0 2.0 hypothetical protein compare
BWI76_RS22450 +1.0 1.8 selenoprotein W-related protein compare
BWI76_RS18725 +1.0 3.7 hypothetical protein compare
BWI76_RS21810 +1.0 1.3 universal stress protein compare
BWI76_RS20375 +1.0 1.4 membrane protein compare
BWI76_RS16470 +1.0 1.4 transcriptional repressor NemR compare
BWI76_RS11110 +1.0 0.8 cell division protein YceG compare
BWI76_RS06280 +1.0 2.0 hypothetical protein compare
BWI76_RS04700 +1.0 1.5 acetolactate synthase small subunit compare
BWI76_RS24270 +1.0 1.5 membrane protein compare
BWI76_RS10275 +1.0 2.1 ABC transporter compare
BWI76_RS08970 +1.0 1.8 glutamine ABC transporter permease GlnP compare
BWI76_RS09520 +1.0 1.7 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS22935 +1.0 0.8 L-fucose mutarotase compare
BWI76_RS18065 +1.0 1.3 DNA polymerase III subunit theta compare
BWI76_RS06475 +1.0 0.8 protoheme IX farnesyltransferase compare
BWI76_RS16075 +1.0 1.2 oxidoreductase compare
BWI76_RS07255 +1.0 1.7 hypothetical protein compare
BWI76_RS12665 +1.0 1.3 hypothetical protein compare
BWI76_RS20940 +1.0 1.3 uracil/xanthine transporter compare
BWI76_RS24240 +0.9 1.9 hypothetical protein compare
BWI76_RS01585 +0.9 3.8 transcriptional regulator compare
BWI76_RS14170 +0.9 1.4 hypothetical protein compare
BWI76_RS08980 +0.9 1.1 DNA starvation/stationary phase protection protein compare
BWI76_RS25485 +0.9 1.3 septum formation protein Maf compare
BWI76_RS19375 +0.9 1.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS05800 +0.9 1.9 phage transcriptional activator, Ogr/delta compare
BWI76_RS10035 +0.9 1.2 hypothetical protein compare
BWI76_RS10730 +0.9 1.1 bifunctional glucose-1-phosphatase/inositol phosphatase compare
BWI76_RS25600 +0.9 0.6 tRNA-Thr compare
BWI76_RS11750 +0.9 1.6 chitooligosaccharide deacetylase compare
BWI76_RS02725 +0.9 0.8 HxlR family transcriptional regulator compare
BWI76_RS18575 +0.9 2.0 transcriptional regulator compare
BWI76_RS21495 +0.9 3.1 outer membrane lipoprotein compare
BWI76_RS21470 +0.9 2.5 gluconolaconase compare
BWI76_RS11185 +0.9 2.2 ligand-gated channel protein compare
BWI76_RS26005 +0.9 2.5 glutamine amidotransferase compare
BWI76_RS19585 +0.9 1.2 gentisate 1,2-dioxygenase compare
BWI76_RS24945 +0.9 1.1 glutamine amidotransferase compare
BWI76_RS24950 +0.9 2.4 hypothetical protein compare
BWI76_RS27735 +0.9 2.2 hypothetical protein compare
BWI76_RS02045 +0.9 2.2 LysR family transcriptional regulator compare
BWI76_RS03610 +0.9 1.5 hypothetical protein compare
BWI76_RS21290 +0.9 1.8 DNA-binding transcriptional regulator compare
BWI76_RS06075 +0.9 1.9 taurine transporter subunit compare
BWI76_RS10440 +0.9 3.9 protein-disulfide reductase compare
BWI76_RS16480 +0.9 1.4 lactoylglutathione lyase compare
BWI76_RS09515 +0.9 1.2 arginine ABC transporter substrate-binding protein compare
BWI76_RS21070 +0.9 0.9 outer membrane protein assembly factor BamB compare
BWI76_RS22230 +0.9 3.5 Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) (from data) compare
BWI76_RS13955 +0.9 1.6 hypothetical protein compare
BWI76_RS23505 +0.9 5.6 ferrous iron transporter B compare
BWI76_RS05315 +0.9 1.3 Rho-binding antiterminator compare
BWI76_RS14820 +0.9 1.2 LysR family transcriptional regulator compare
BWI76_RS10870 +0.9 3.9 nicotinamidase compare
BWI76_RS10770 +0.9 1.8 pyrimidine utilization protein C compare
BWI76_RS09960 +0.9 1.2 Lon protease compare
BWI76_RS14840 +0.9 3.0 hypothetical protein compare
BWI76_RS11000 +0.9 2.8 glutaredoxin 2 compare
BWI76_RS11105 +0.9 1.8 aminodeoxychorismate lyase compare
BWI76_RS14030 +0.8 2.4 ABC transporter permease compare
BWI76_RS00565 +0.8 1.9 branched-chain amino acid transport compare
BWI76_RS04095 +0.8 2.0 dUMP phosphatase compare
BWI76_RS23515 +0.8 1.7 antibiotic biosynthesis monooxygenase compare
BWI76_RS24825 +0.8 1.6 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS18335 +0.8 2.8 DNA-binding response regulator compare
BWI76_RS18830 +0.8 1.9 protein NifY compare
BWI76_RS13630 +0.8 3.8 ABC transporter compare
BWI76_RS16840 +0.8 1.9 ABC transporter compare
BWI76_RS22270 +0.8 2.6 nickel transporter compare
BWI76_RS22965 +0.8 3.4 cysteine sulfinate desulfinase compare
BWI76_RS12515 +0.8 0.6 protease compare
BWI76_RS11645 +0.8 3.4 ABC transporter substrate-binding protein compare
BWI76_RS15445 +0.8 1.4 hypothetical protein compare
BWI76_RS20040 +0.8 2.8 tricarboxylic transport membrane protein compare
BWI76_RS24110 +0.8 1.8 YggU family protein compare
BWI76_RS19310 +0.8 1.1 ABC transporter permease compare
BWI76_RS20810 +0.8 3.4 ethanolamine utilization cobalamin adenosyltransferase compare
BWI76_RS26020 +0.8 2.8 peptidylprolyl isomerase A compare
BWI76_RS07885 +0.8 3.3 sugar ABC transporter permease compare
BWI76_RS20695 +0.8 1.7 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS09925 +0.8 2.1 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase compare
BWI76_RS20330 +0.8 2.1 histidine/lysine/arginine/ornithine ABC transporter permease HisQ compare
BWI76_RS08500 +0.8 1.5 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS19860 +0.8 1.6 hypothetical protein compare
BWI76_RS01650 +0.8 1.9 acetyltransferase compare
BWI76_RS21390 +0.8 1.8 thiol disulfide reductase thioredoxin compare
BWI76_RS17405 +0.8 2.4 cation transport regulator compare
BWI76_RS06265 +0.8 2.0 antibiotic biosynthesis monooxygenase compare
BWI76_RS06065 +0.8 2.2 taurine ABC transporter substrate-binding protein compare
BWI76_RS08615 +0.8 1.9 galactokinase compare
BWI76_RS15605 +0.8 0.8 hypothetical protein compare
BWI76_RS22290 +0.8 3.6 PTS cellobiose/arbutin/salicin transporter subunit IIBC compare
BWI76_RS27820 +0.8 0.4 ilvB operon leader peptide IvbL compare
BWI76_RS12860 +0.8 0.7 hypothetical protein compare
BWI76_RS24720 +0.8 1.4 hypothetical protein compare
BWI76_RS00425 +0.8 0.8 D-tyrosyl-tRNA(Tyr) deacylase compare
BWI76_RS11710 +0.8 2.0 nucleotide excision repair endonuclease compare
BWI76_RS09165 +0.8 2.5 phosphatase YbjI compare
BWI76_RS19330 +0.8 0.6 HAD family hydrolase compare
BWI76_RS04145 +0.8 2.2 purine-nucleoside phosphorylase compare
BWI76_RS13320 +0.8 1.0 putative LpxA-like enzyme compare
BWI76_RS21940 +0.8 1.5 SDR family oxidoreductase compare
BWI76_RS26650 +0.8 3.1 iron transporter compare
BWI76_RS05940 +0.8 2.1 hypothetical protein compare
BWI76_RS10465 +0.7 1.2 hypothetical protein compare
BWI76_RS11240 +0.7 1.8 spermidine/putrescine ABC transporter substrate-binding protein PotD compare
BWI76_RS22275 +0.7 4.1 carbamoyltransferase HypF compare
BWI76_RS06230 +0.7 2.7 DNA-binding response regulator compare
BWI76_RS21945 +0.7 1.9 LysR family transcriptional regulator compare
BWI76_RS07230 +0.7 2.6 transcriptional regulator compare
BWI76_RS19955 +0.7 2.0 glycerophosphoryl diester phosphodiesterase compare
BWI76_RS00075 +0.7 0.8 N-acetylmannosamine-6-phosphate 2-epimerase compare
BWI76_RS18765 +0.7 1.4 FUSC family protein compare
BWI76_RS16990 +0.7 1.1 ABC transporter ATP-binding protein compare
BWI76_RS21185 +0.7 2.5 hypothetical protein compare
BWI76_RS03745 +0.7 2.7 putative 2-hydroxyglutaryl-CoA dehydratase compare
BWI76_RS21235 +0.7 0.4 hypothetical protein compare
BWI76_RS15085 +0.7 3.2 3-deoxy-D-arabinose-heptulosonic-7-phosphate synthase compare
BWI76_RS06595 +0.7 1.2 hypothetical protein compare
BWI76_RS04965 +0.7 2.5 ABC transporter ATP-binding protein compare
BWI76_RS21310 +0.7 0.5 DNA repair protein RecO compare
BWI76_RS24280 +0.7 1.3 biopolymer transporter ExbB compare
BWI76_RS24080 +0.7 0.8 DUF179 domain-containing protein compare
BWI76_RS03700 +0.7 2.8 hypothetical protein compare
BWI76_RS27455 +0.7 0.7 DUF805 domain-containing protein compare
BWI76_RS07705 +0.7 1.3 enterochelin esterase compare
BWI76_RS16870 +0.7 2.3 LysR family transcriptional regulator compare
BWI76_RS14730 +0.7 1.7 4-oxalocrotonate tautomerase compare
BWI76_RS01935 +0.7 1.5 thiamin phosphate synthase compare
BWI76_RS06780 +0.7 2.2 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS22620 +0.7 1.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BWI76_RS16655 +0.7 2.1 CatA-like O-acetyltransferase compare
BWI76_RS09640 +0.7 0.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS11030 +0.7 1.2 MFS transporter compare
BWI76_RS22210 +0.7 1.9 murein transglycosylase B compare
BWI76_RS00325 +0.7 2.8 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
BWI76_RS04990 +0.7 1.8 pantoate--beta-alanine ligase compare
BWI76_RS05050 +0.7 1.6 general secretion pathway protein GspL compare
BWI76_RS18115 +0.7 3.0 pyruvate kinase compare
BWI76_RS18060 +0.7 1.4 hypothetical protein compare
BWI76_RS25270 +0.7 1.6 ribosome hibernation promoting factor compare
BWI76_RS07380 +0.7 1.9 hypothetical protein compare
BWI76_RS18610 +0.7 1.4 transcriptional regulator LysR compare
BWI76_RS15975 +0.7 0.6 hypothetical protein compare
BWI76_RS18270 +0.7 1.3 hypothetical protein compare
BWI76_RS27610 +0.7 1.9 hydroxyacid dehydrogenase compare
BWI76_RS08280 +0.7 2.9 acyl-CoA esterase compare
BWI76_RS19750 +0.7 1.8 elongation factor P-like protein YeiP compare
BWI76_RS18050 +0.7 1.1 hypothetical protein compare
BWI76_RS17525 +0.7 1.0 XshC-Cox1-family protein compare
BWI76_RS11775 +0.7 1.3 2-deoxy-D-gluconate 3-dehydrogenase compare
BWI76_RS10700 +0.7 1.5 XRE family transcriptional regulator compare
BWI76_RS15800 +0.7 1.5 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella across organisms