Experiment set13IT044 for Agrobacterium fabrum C58

Compare to:

Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days

200 most important genes:

  gene name fitness t score description  
Atu1129 -5.7 -4.0 excinuclease ABC chain C compare
Atu0041 -4.6 -3.1 glutamine amidotransferase compare
Atu1513 -4.2 -5.0 ABC excinuclease subunit A compare
Atu1030 -4.1 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2036 -4.0 -13.8 acetolactate synthase III, large subunit compare
Atu2728 -3.6 -2.5 beta (1-->2) glucan export ATP-binding protein compare
Atu0769 -3.3 -2.2 protoheme IX farnesyltransferase compare
Atu3598 -3.2 -2.2 thiol:disulfide interchange protein compare
Atu0039 -3.2 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu0038 -3.0 -7.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0912 -3.0 -1.5 Na+/H+ antiporter compare
Atu0040 -3.0 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4166 -2.9 -3.0 UDP-glucose 4-epimerase compare
Atu6098 -2.9 -1.5 transcriptional regulator, HTH family compare
Atu3707 -2.8 -4.1 phosphoserine aminotransferase compare
Atu0030 -2.7 -2.4 phosphocarrier protein HPr compare
Atu0679 -2.7 -7.6 ATP phosphoribosyltransferase compare
Atu0537 -2.6 -8.5 histidinol dehydrogenase compare
Atu2057 -2.6 -3.4 DNA helicase II compare
Atu3706 -2.4 -8.3 D-3-phosphoglycerate dehydrogenase compare
Atu0678 -2.3 -6.1 histidyl-tRNA synthetase compare
Atu4317 -2.3 -3.6 TetR family transcriptional regulator compare
Atu1750 -2.3 -7.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu2125 -2.3 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1588 -2.2 -8.7 homoserine dehydrogenase compare
Atu2017 -2.2 -1.4 hypothetical protein compare
Atu3908 -2.1 -11.9 GntR family transcriptional regulator compare
Atu3012 -2.1 -2.3 hypothetical protein compare
Atu1417 -2.0 -8.4 enoyl-CoA hydratase compare
Atu2439 -2.0 -1.8 hypothetical protein compare
Atu2183 -2.0 -9.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1619 -1.9 -3.7 protein-export membrane protein SECG compare
Atu0354 -1.9 -2.8 ferric uptake regulator compare
Atu1874 -1.9 -3.3 RecA protein compare
Atu2001 -1.9 -4.7 excinuclease ABC subunit B compare
Atu1810 -1.8 -1.3 hypothetical protein compare
Atu3353 -1.8 -9.8 mannose-1-phosphate guanylyltransferase compare
Atu0723 -1.8 -1.7 FAD dependent oxidoreductase compare
Atu0421 -1.8 -1.6 ABC transporter, membrane spanning protein compare
Atu4616 -1.8 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu1205 -1.7 -11.5 threonine dehydratase compare
Atu2684 -1.7 -1.9 hypothetical protein compare
Atu3311 -1.7 -10.4 phosphomannose isomerase compare
Atu0703 -1.7 -2.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0331 -1.7 -2.6 sigma-54 modulation protein compare
Atu0043 -1.7 -2.8 imidazoleglycerol-phosphate dehydratase compare
Atu2790 -1.7 -2.6 3-isopropylmalate dehydratase, small subunit compare
Atu5430 -1.6 -1.4 hypothetical protein compare
Atu1077 -1.5 -3.0 DNA repair protein compare
Atu1470 -1.5 -1.3 Camphor resistance protein compare
Atu2040 -1.5 -5.1 phosphoserine phosphatase compare
Atu4615 -1.5 -6.3 glucose-1-phosphate thymidylyltransferase compare
Atu1127 -1.5 -2.4 molybdopterin converting factor small subunit compare
Atu0971 -1.5 -2.9 two component sensor kinase compare
Atu4614 -1.5 -5.7 glycosyltransferase compare
Atu4613 -1.5 -8.9 glycosyltransferase compare
Atu1307 -1.5 -5.6 dihydroorotase compare
Atu2464 -1.5 -2.8 formyltetrahydrofolate deformylase compare
Atu4618 -1.5 -9.5 dTDP-rhamnose-3,5-epimerase compare
Atu1028 -1.5 -2.5 hypothetical protein compare
Atu0977 -1.4 -3.6 serine protease DO-like protease compare
Atu0017 -1.4 -3.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3008 -1.4 -0.9 hypothetical protein compare
Atu3763 -1.4 -1.3 hypothetical protein compare
Atu4617 -1.4 -7.1 dTDP-D-glucose-4,6-dehydratase compare
Atu1354 -1.4 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0486 -1.4 -4.4 dihydroorotate dehydrogenase compare
Atu0399 -1.4 -4.0 dihydroorotase compare
Atu2379 -1.4 -6.6 phosphomannomutase compare
Atu1364 -1.3 -4.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1646 -1.3 -5.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu4144 -1.3 -1.3 hypothetical protein compare
Atu4346 -1.3 -3.5 hypothetical protein compare
Atu2791 -1.3 -7.2 3-isopropylmalate dehydrogenase compare
Atu1075 -1.3 -5.1 amidophosphoribosyltransferase compare
Atu0190 -1.3 -4.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3885 -1.3 -7.6 inositol monophosphatase compare
Atu1902 -1.3 -5.0 transketolase compare
Atu1904 -1.3 -4.3 transcriptional regulator compare
Atu8167 -1.3 -7.5 putative transmembrane protein compare
Atu2831 -1.3 -4.0 glucose inhibited division protein A compare
Atu2554 -1.3 -2.5 lysyl-tRNA synthetase compare
Atu1359 -1.3 -1.1 dnaK deletion suppressor protein compare
Atu0050 -1.2 -3.7 two component response regulator compare
Atu4773 -1.2 -1.4 two component response regulator compare
Atu4149 -1.2 -7.4 UDP-glucose 6-dehydrogenase compare
Atu2709 -1.2 -8.7 3-isopropylmalate dehydratase, large subunit compare
Atu2052 -1.2 -4.1 hypothetical protein compare
Atu8138 -1.2 -1.8 hypothetical protein compare
Atu1687 -1.2 -5.4 anthranilate phosphoribosyltransferase compare
Atu0434 -1.2 -1.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4711 -1.2 -4.1 two component sensor kinase compare
Atu1327 -1.2 -1.8 NADH-ubiquinone oxidoreductase compare
Atu0876 -1.2 -1.7 superoxide dismutase compare
Atu0086 -1.2 -0.9 ribosome-binding factor A compare
Atu3730 -1.2 -1.3 hypothetical protein compare
Atu3609 -1.2 -4.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu0184 -1.2 -2.0 glucokinase compare
Atu0029 -1.1 -4.5 S-adenosylhomocysteine hydrolase compare
Atu3394 -1.1 -3.5 iron ABC transporter ATPase compare
Atu4610 -1.1 -6.4 sugar nucleotide epimerase/dehydratase compare
Atu1021 -1.1 -2.4 outer membrane protein compare
Atu4882 -1.1 -2.0 hypothetical protein compare
Atu2634 -1.1 -2.3 hypothetical protein compare
Atu6189 -1.1 -1.8 protein secretion chaperone compare
Atu0298 -1.1 -4.6 orotidine 5 compare
Atu4148 -1.1 -5.7 UDP-glucuronic acid epimerase compare
Atu2633 -1.1 -2.1 RhtB family transporter compare
Atu2824 -1.1 -3.2 hypothetical protein compare
Atu0400 -1.1 -3.2 orotate phosphoribosyltransferase compare
Atu1039 -1.1 -3.2 DNA repair protein RecO compare
Atu1679 -1.1 -2.0 peptidyl prolyl cis-trans isomerase compare
Atu2800 -1.1 -2.6 precorrin-3B C17-methyltransferase compare
Atu2718 -1.1 -5.2 homoserine O-succinyltransferase compare
Atu0499 -1.0 -6.1 hypothetical protein compare
Atu2267 -1.0 -5.3 hypothetical protein compare
Atu2522 -1.0 -6.8 agrobacterium chromosomal virulence protein B compare
Atu1446 -1.0 -1.0 two component response regulator compare
Atu0099 -1.0 -4.7 prephenate dehydratase compare
Atu0647 -1.0 -3.7 phosphoribosylamine--glycine ligase compare
Atu0784 -1.0 -2.3 hypothetical protein compare
Atu1163 -1.0 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3754 -1.0 -4.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2590 -1.0 -5.5 hypothetical protein compare
Atu0361 -1.0 -2.7 transcriptional regulator compare
Atu0941 -0.9 -0.8 hypothetical protein compare
Atu4609 -0.9 -5.6 glycosyltransferase compare
Atu5160 -0.9 -2.1 transcriptional regulator protein compare
Atu1339 -0.9 -3.0 ribonuclease E compare
Atu4608 -0.9 -6.3 hypothetical protein compare
Atu2289 -0.9 -6.7 anthranilate synthase component I and II compare
Atu1647 -0.9 -4.7 ABC transporter, membrane spanning protein compare
Atu1850 -0.9 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu2249 -0.9 -1.0 hypothetical protein compare
Atu1140 -0.9 -3.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4514 -0.9 -2.9 RpiR family transcriptional regulator compare
Atu1445 -0.9 -3.2 two component sensor kinase compare
Atu0073 -0.9 -3.9 recF-like protein compare
Atu1677 -0.9 -2.5 queuine tRNA-ribosyltransferase compare
Atu1688 -0.9 -3.2 indole-3-glycerol-phosphate synthase compare
Atu0142 -0.9 -1.7 cytochrome o ubiquinol oxidase subunit II compare
Atu2462 -0.9 -2.3 hypothetical protein compare
Atu2555 -0.9 -2.6 L-lysine 2,3-aminomutase compare
Atu8118 -0.9 -4.6 putative universal stress protein compare
Atu0188 -0.9 -1.3 ABC transporter, membrane spanning protein (peptide) compare
Atu1308 -0.9 -3.6 aspartate carbamoyl transferase catalytic subunit compare
Atu0923 -0.9 -4.7 hypothetical protein compare
Atu0943 -0.9 -1.8 hypothetical protein compare
Atu2582 -0.9 -4.1 UDP-glucose/GDP-mannose dehydrogenase compare
Atu4173 -0.9 -1.7 phosphoenolpyruvate-protein phosphotransferase compare
Atu8082 -0.8 -2.2 hypothetical protein compare
Atu2073 -0.8 -2.5 membrane protein compare
Atu0153 -0.8 -3.8 transcriptional regulator, Fur family compare
Atu0093 -0.8 -2.6 Recombination protein compare
Atu1705 -0.8 -3.0 SEC-independent protein translocase protein compare
Atu3485 -0.8 -4.8 short chain dehydrogenase compare
Atu2807 -0.8 -3.2 cob(I)alamin adenosyltransferase compare
Atu3429 -0.8 -1.1 hypothetical protein compare
Atu0026 -0.8 -0.7 hypothetical protein compare
Atu1645 -0.8 -3.6 ABC transporter, substrate binding protein compare
Atu4274 -0.8 -3.8 hypothetical protein compare
Atu0565 -0.8 -2.2 hypothetical protein compare
Atu2352 -0.8 -1.6 hypothetical protein compare
Atu2832 -0.8 -1.9 tRNA modification GTPase compare
Atu2793 -0.8 -3.3 cobyrinic acid a,c-diamide synthase compare
Atu0141 -0.8 -0.8 cytochrome O ubiquinol oxidase subunit I compare
Atu0340 -0.8 -1.1 SAM dependent methyltransferase compare
Atu5125 -0.8 -3.4 GntR family transcriptional regulator compare
Atu1468 -0.8 -3.8 hypothetical protein compare
Atu0269 -0.8 -3.0 exodeoxyribonuclease VII large subunit compare
Atu1739 -0.8 -2.3 permease compare
Atu3739 -0.8 -1.7 phosphoglycerate kinase compare
Atu0689 -0.8 -4.4 ribosomal large subunit pseudouridine synthase B compare
Atu0051 -0.8 -2.7 two component sensor kinase compare
Atu2577 -0.8 -5.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2207 -0.8 -1.9 two component sensor kinase compare
Atu2067 -0.8 -0.6 hypothetical protein compare
Atu4747 -0.8 -3.1 sugar ABC transporter permease compare
Atu0744 -0.8 -1.9 hypothetical protein compare
Atu1760 -0.7 -0.9 hypothetical protein compare
Atu2821 -0.7 -1.9 transcriptional regulator, GntR family compare
Atu0107 -0.7 -2.3 hypothetical protein compare
Atu0206 -0.7 -1.5 hypothetical protein compare
Atu0893 -0.7 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu1141 -0.7 -2.3 Phosphoribosylglycinamide synthetase compare
Atu1449 -0.7 -3.2 potassium uptake protein compare
Atu2484 -0.7 -1.1 hypothetical protein compare
Atu4435 -0.7 -1.8 oligopeptide ABC transporter ATPase compare
Atu8056 -0.7 -0.9 hypothetical protein compare
Atu2376 -0.7 -2.4 hypothetical protein compare
Atu0205 -0.7 -4.6 methylmalonate-semialdehyde dehydrogenase compare
Atu1251 -0.7 -3.9 O-acetylhomoserine sulfhydrylase compare
Atu2803 -0.7 -2.4 Cobalamin biosynthesis associated protein compare
Atu2193 -0.7 -0.6 hypothetical protein compare
Atu3727 -0.7 -2.2 hypothetical protein compare
Atu2583 -0.7 -4.8 glycosyltransferase compare
Atu2264 -0.7 -4.6 2-isopropylmalate synthase compare
Atu4055 -0.7 -3.7 endo-1,3-1,4-beta-glycanase compare
Atu0101 -0.7 -2.3 cytochrome c compare
Atu3219 -0.7 -4.4 dihydroxy-acid dehydratase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days across organisms