Experiment set13H32 for Pseudomonas stutzeri RCH2

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_3317 -7.8 -5.4 Phosphotransferase System HPr (HPr) Family compare
Psest_0279 -7.1 -4.9 methionine biosynthesis protein MetW compare
Psest_3862 -6.9 -10.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0152 -6.3 -7.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_3710 -6.3 -16.7 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3711 -6.2 -18.4 Glutamate synthase domain 2 compare
Psest_2584 -6.2 -4.3 Phosphoribosylanthranilate isomerase compare
Psest_3648 -6.1 -8.4 anthranilate phosphoribosyltransferase compare
Psest_3866 -6.1 -19.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3649 -6.1 -9.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0153 -6.0 -14.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0062 -6.0 -13.4 tryptophan synthase, alpha subunit compare
Psest_3944 -6.0 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2591 -6.0 -4.1 3-isopropylmalate dehydratase, large subunit compare
Psest_3650 -6.0 -16.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3647 -5.8 -8.9 Indole-3-glycerol phosphate synthase compare
Psest_2578 -5.8 -16.2 O-succinylhomoserine sulfhydrylase compare
Psest_0155 -5.7 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3298 -5.7 -13.7 histidinol dehydrogenase compare
Psest_0063 -5.7 -11.5 tryptophan synthase, beta subunit compare
Psest_0952 -5.7 -3.9 Uncharacterized conserved protein compare
Psest_2590 -5.7 -1.9 3-isopropylmalate dehydratase, small subunit compare
Psest_0508 -5.6 -12.0 gamma-glutamyl phosphate reductase compare
Psest_3932 -5.6 -6.7 nitrogen regulation protein NR(I) compare
Psest_3818 -5.5 -11.7 endoribonuclease L-PSP, putative compare
Psest_0326 -5.4 -17.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3299 -5.3 -16.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3931 -5.2 -8.4 Signal transduction histidine kinase, nitrogen specific compare
Psest_3864 -5.2 -16.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0325 -5.2 -17.1 Putative threonine efflux protein compare
Psest_0313 -5.1 -6.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3384 -5.0 -12.1 glutamate 5-kinase compare
Psest_0280 -4.9 -16.3 homoserine O-acetyltransferase compare
Psest_0954 -4.9 -12.2 Fe-S oxidoreductase compare
Psest_0953 -4.7 -14.5 iron-sulfur cluster-binding protein compare
Psest_3943 -4.5 -7.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0687 -4.4 -13.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1473 -4.4 -9.7 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1295 -4.2 -8.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2088 -4.2 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_2589 -4.1 -13.0 3-isopropylmalate dehydrogenase compare
Psest_2579 -3.8 -3.7 amidophosphoribosyltransferase compare
Psest_2845 -3.8 -12.8 [Protein-PII] uridylyltransferase compare
Psest_2650 -3.7 -6.1 hypothetical protein compare
Psest_1772 -3.6 -7.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3129 -3.5 -2.2 tyrosine recombinase XerD compare
Psest_0327 -3.2 -5.9 Transcriptional regulator compare
Psest_3297 -3.2 -14.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4084 -3.1 -19.3 oxaloacetate decarboxylase alpha subunit compare
Psest_4085 -3.1 -18.2 Biotin carboxylase compare
Psest_3721 -3.1 -12.0 Malic enzyme compare
Psest_1037 -3.0 -3.2 acetolactate synthase, small subunit compare
Psest_4086 -3.0 -15.0 Transcriptional regulator compare
Psest_1496 -2.9 -2.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_0498 -2.8 -2.5 ribosome small subunit-dependent GTPase A compare
Psest_2329 -2.8 -19.1 Transcriptional regulator compare
Psest_3226 -2.7 -1.9 Predicted membrane protein compare
Psest_3998 -2.6 -11.0 glutamate--cysteine ligase compare
Psest_1686 -2.5 -8.1 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1474 -2.4 -1.7 phosphoribosylaminoimidazole synthetase compare
Psest_1013 -2.4 -2.8 phosphoribosylamine--glycine ligase compare
Psest_0411 -2.3 -12.6 biotin synthetase compare
Psest_3960 -2.3 -2.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2714 -2.3 -3.9 7-cyano-7-deazaguanine reductase compare
Psest_3159 -2.2 -7.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1640 -2.2 -13.7 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3351 -2.2 -8.6 peptide chain release factor 3 compare
Psest_2333 -2.2 -1.8 Protein of unknown function (DUF3359). compare
Psest_2104 -2.1 -2.7 IscR-regulated protein YhgI compare
Psest_1724 -2.0 -6.3 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3927 -2.0 -6.0 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0955 -2.0 -4.6 D,L-lactate:H+ symporter (from data) compare
Psest_2090 -2.0 -4.3 Protein of unknown function (DUF2970). compare
Psest_0306 -1.9 -14.0 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0412 -1.9 -11.9 8-amino-7-oxononanoate synthase compare
Psest_0415 -1.8 -4.6 dethiobiotin synthase compare
Psest_2324 -1.8 -14.8 hypothetical protein compare
Psest_0520 -1.7 -1.5 hypothetical protein compare
Psest_2953 -1.7 -3.9 Histone acetyltransferase compare
Psest_1012 -1.7 -5.3 Signal transduction histidine kinase compare
Psest_4005 -1.7 -7.4 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3178 -1.6 -4.5 formyltetrahydrofolate deformylase compare
Psest_0489 -1.6 -1.1 phosphoserine phosphatase SerB compare
Psest_0951 -1.6 -9.5 FAD/FMN-containing dehydrogenases compare
Psest_0442 -1.6 -3.5 ATPases of the AAA+ class compare
Psest_3301 -1.6 -3.6 Predicted transcriptional regulator, BolA superfamily compare
Psest_0413 -1.5 -6.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2946 -1.5 -3.4 septum site-determining protein MinD compare
Psest_1804 -1.5 -2.3 Superfamily II DNA and RNA helicases compare
Psest_2325 -1.5 -8.9 alpha-L-glutamate ligase-related protein compare
Psest_1679 -1.4 -2.9 ribonuclease, Rne/Rng family compare
Psest_2323 -1.4 -10.8 Uncharacterized protein conserved in archaea compare
Psest_0398 -1.4 -7.7 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain compare
Psest_2067 -1.4 -2.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0722 -1.4 -6.9 Predicted ATPase compare
Psest_1292 -1.4 -7.7 monothiol glutaredoxin, Grx4 family compare
Psest_0737 -1.3 -1.5 Cu(I)-responsive transcriptional regulator compare
Psest_0097 -1.3 -2.6 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1695 -1.3 -5.0 Tfp pilus assembly protein PilZ compare
Psest_1242 -1.3 -2.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0359 -1.3 -2.6 Transcriptional regulators compare
Psest_0170 -1.3 -5.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_1920 -1.3 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_3288 -1.3 -9.4 type IV-A pilus assembly ATPase PilB compare
Psest_1506 -1.2 -5.0 queuosine biosynthesis protein QueC compare
Psest_0491 -1.2 -7.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3806 -1.2 -6.9 Phosphomannomutase compare
Psest_2988 -1.2 -5.8 aspartate kinase, monofunctional class compare
Psest_0300 -1.2 -7.4 Methyl-accepting chemotaxis protein compare
Psest_0545 -1.2 -7.1 urease accessory protein UreG conserved
Psest_2527 -1.2 -6.2 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4191 -1.2 -2.3 Transcriptional regulator compare
Psest_4044 -1.1 -3.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_0557 -1.1 -7.7 Urease (EC 3.5.1.5) (from data) conserved
Psest_0297 -1.1 -4.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1241 -1.1 -6.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Psest_0414 -1.1 -4.1 biotin biosynthesis protein BioC compare
Psest_0609 -1.1 -1.9 hypothetical protein compare
Psest_2532 -1.1 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0548 -1.1 -5.6 Urease accessory protein UreE compare
Psest_3322 -1.1 -9.5 TIGR02099 family protein compare
Psest_2308 -1.1 -1.4 Predicted Fe-S protein compare
Psest_3766 -1.1 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_0958 -1.1 -5.3 Oligoketide cyclase/lipid transport protein compare
Psest_1631 -1.0 -2.1 Uncharacterized conserved small protein compare
Psest_1488 -1.0 -8.6 outer membrane porin, OprD family. compare
Psest_3809 -1.0 -3.6 hypothetical protein compare
Psest_1204 -1.0 -2.1 Transcriptional regulators compare
Psest_0547 -1.0 -2.1 Urease accessory protein UreF compare
Psest_0560 -1.0 -7.2 Urease (EC 3.5.1.5) (from data) conserved
Psest_0138 -1.0 -5.9 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1509 -1.0 -5.8 quinolinate synthetase complex, A subunit compare
Psest_2316 -1.0 -7.2 phosphoenolpyruvate synthase compare
Psest_0137 -1.0 -6.0 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0561 -1.0 -5.7 Urease accessory protein UreH compare
Psest_3289 -1.0 -5.7 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1870 -1.0 -1.1 Transcriptional regulators compare
Psest_2530 -1.0 -3.8 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3375 -1.0 -6.4 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1260 -1.0 -4.2 type IV pilus biogenesis/stability protein PilW compare
Psest_3287 -1.0 -4.0 Type II secretory pathway, component PulF compare
Psest_3767 -0.9 -3.3 tyrosine recombinase XerC compare
Psest_3286 -0.9 -4.6 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_0136 -0.9 -6.1 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_0842 -0.9 -1.8 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_0705 -0.9 -7.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1814 -0.9 -6.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0024 -0.9 -5.7 LysM domain. compare
Psest_3762 -0.9 -4.0 iron donor protein CyaY compare
Psest_3212 -0.9 -2.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2864 -0.9 -2.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2023 -0.9 -2.5 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_3719 -0.9 -6.7 type IV pilus assembly protein PilM compare
Psest_3790 -0.9 -5.6 Cytochrome c5 compare
Psest_0175 -0.9 -4.7 Xaa-Pro aminopeptidase compare
Psest_0718 -0.9 -2.5 nicotinate-nucleotide pyrophosphorylase compare
Psest_1463 -0.9 -1.0 SufE protein probably involved in Fe-S center assembly compare
Psest_0691 -0.9 -6.2 ribonuclease R compare
Psest_0759 -0.9 -1.4 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2810 -0.9 -3.7 5'/3'-nucleotidase SurE compare
Psest_2285 -0.8 -2.5 ATP-dependent protease La compare
Psest_2605 -0.8 -2.2 transcriptional activator RfaH compare
Psest_0706 -0.8 -5.7 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3715 -0.8 -6.9 type IV pilus secretin (or competence protein) PilQ compare
Psest_3339 -0.8 -4.1 Signal transduction histidine kinase compare
Psest_2218 -0.8 -2.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_4315 -0.8 -2.2 ABC-type metal ion transport system, permease component compare
Psest_1647 -0.8 -2.2 Lhr-like helicases compare
Psest_1860 -0.8 -2.0 Uncharacterized conserved protein compare
Psest_3840 -0.8 -3.1 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_0292 -0.8 -1.9 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0692 -0.8 -2.2 rRNA methylase, putative, group 3 compare
Psest_4049 -0.8 -1.2 hypothetical protein compare
Psest_3720 -0.8 -6.9 penicillin-binding protein, 1A family compare
Psest_2719 -0.8 -1.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1183 -0.8 -2.1 hydroxyisourate hydrolase compare
Psest_1527 -0.8 -6.3 Na+/proline symporter compare
Psest_4083 -0.8 -6.2 Predicted permease compare
Psest_3716 -0.8 -5.4 Tfp pilus assembly protein PilP compare
Psest_0744 -0.8 -1.0 Uncharacterized conserved protein compare
Psest_2079 -0.8 -6.4 Predicted permeases compare
Psest_1601 -0.8 -1.8 Signal transduction histidine kinase compare
Psest_1886 -0.8 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_4364 -0.8 -4.1 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_2158 -0.8 -6.3 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_3174 -0.8 -6.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3014 -0.8 -1.7 cob(I)alamin adenosyltransferase compare
Psest_0959 -0.8 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_3717 -0.8 -4.7 Tfp pilus assembly protein PilO compare
Psest_1562 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2981 -0.8 -1.5 sodium pump decarboxylases, gamma subunit compare
Psest_3565 -0.8 -1.6 hypothetical protein compare
Psest_4134 -0.7 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_1518 -0.7 -1.7 tRNA_Ser_CGA compare
Psest_2327 -0.7 -3.8 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_1700 -0.7 -3.1 Transcriptional regulator compare
Psest_0212 -0.7 -1.0 exodeoxyribonuclease V, gamma subunit compare
Psest_0546 -0.7 -2.4 hypothetical protein compare
Psest_2331 -0.7 -5.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_0218 -0.7 -1.9 Acyl-CoA hydrolase compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source Urea in Pseudomonas stutzeri RCH2

For nitrogen source Urea across organisms