Experiment set13H25 for Pseudomonas stutzeri RCH2

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
Psest_0508 -6.8 -9.3 gamma-glutamyl phosphate reductase compare
Psest_3650 -6.5 -15.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3647 -6.5 -7.7 Indole-3-glycerol phosphate synthase compare
Psest_3648 -6.3 -10.4 anthranilate phosphoribosyltransferase compare
Psest_3944 -6.2 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0155 -6.0 -8.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3299 -5.9 -16.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3384 -5.8 -8.9 glutamate 5-kinase compare
Psest_2578 -5.8 -16.4 O-succinylhomoserine sulfhydrylase compare
Psest_3866 -5.8 -24.1 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0063 -5.6 -13.1 tryptophan synthase, beta subunit compare
Psest_0153 -5.5 -16.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0326 -5.5 -21.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2584 -5.4 -8.2 Phosphoribosylanthranilate isomerase compare
Psest_0954 -5.2 -12.2 Fe-S oxidoreductase compare
Psest_0952 -5.2 -5.0 Uncharacterized conserved protein compare
Psest_0953 -5.2 -14.2 iron-sulfur cluster-binding protein compare
Psest_0062 -5.1 -15.2 tryptophan synthase, alpha subunit compare
Psest_3864 -5.1 -16.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0279 -5.1 -8.4 methionine biosynthesis protein MetW compare
Psest_0280 -5.0 -18.4 homoserine O-acetyltransferase compare
Psest_0313 -5.0 -7.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0325 -5.0 -15.4 Putative threonine efflux protein compare
Psest_3298 -5.0 -13.5 histidinol dehydrogenase compare
Psest_3818 -4.9 -13.7 endoribonuclease L-PSP, putative compare
Psest_1473 -4.9 -10.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3649 -4.6 -14.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2591 -4.6 -5.2 3-isopropylmalate dehydratase, large subunit compare
Psest_2590 -4.6 -1.8 3-isopropylmalate dehydratase, small subunit compare
Psest_0687 -4.6 -14.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0152 -4.5 -5.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_2589 -4.4 -12.7 3-isopropylmalate dehydrogenase compare
Psest_1037 -4.3 -4.5 acetolactate synthase, small subunit compare
Psest_3226 -4.3 -1.7 Predicted membrane protein compare
Psest_1295 -4.2 -9.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3943 -4.2 -7.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2579 -3.8 -5.2 amidophosphoribosyltransferase compare
Psest_4084 -3.6 -20.7 oxaloacetate decarboxylase alpha subunit compare
Psest_4085 -3.5 -20.7 Biotin carboxylase compare
Psest_3721 -3.2 -12.9 Malic enzyme compare
Psest_4086 -3.2 -14.5 Transcriptional regulator compare
Psest_3998 -3.1 -12.1 glutamate--cysteine ligase compare
Psest_2329 -3.0 -18.4 Transcriptional regulator compare
Psest_1772 -2.9 -7.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3297 -2.9 -13.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0327 -2.8 -5.1 Transcriptional regulator compare
Psest_2088 -2.8 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_0411 -2.6 -13.6 biotin synthetase compare
Psest_1686 -2.6 -7.3 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1474 -2.5 -1.7 phosphoribosylaminoimidazole synthetase compare
Psest_1013 -2.5 -2.9 phosphoribosylamine--glycine ligase compare
Psest_3159 -2.2 -8.3 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0306 -2.2 -16.1 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2333 -2.2 -1.6 Protein of unknown function (DUF3359). compare
Psest_4298 -2.2 -1.5 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0415 -2.1 -7.0 dethiobiotin synthase compare
Psest_2566 -2.1 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1012 -2.1 -6.7 Signal transduction histidine kinase compare
Psest_0412 -2.1 -11.9 8-amino-7-oxononanoate synthase compare
Psest_0413 -2.0 -7.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2090 -1.9 -3.7 Protein of unknown function (DUF2970). compare
Psest_0951 -1.9 -9.5 FAD/FMN-containing dehydrogenases compare
Psest_0297 -1.9 -6.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0955 -1.9 -6.1 D,L-lactate:H+ symporter (from data) compare
Psest_0498 -1.8 -1.8 ribosome small subunit-dependent GTPase A compare
Psest_0414 -1.8 -5.2 biotin biosynthesis protein BioC compare
Psest_0193 -1.8 -1.4 conserved hypothetical protein compare
Psest_2946 -1.8 -4.0 septum site-determining protein MinD compare
Psest_3351 -1.7 -7.5 peptide chain release factor 3 compare
Psest_2470 -1.7 -2.8 hypothetical protein compare
Psest_0489 -1.7 -1.1 phosphoserine phosphatase SerB compare
Psest_2532 -1.7 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_3810 -1.6 -1.1 orotate phosphoribosyltransferase compare
Psest_0133 -1.6 -2.1 type VI secretion protein, VC_A0107 family compare
Psest_1292 -1.6 -9.1 monothiol glutaredoxin, Grx4 family compare
Psest_1695 -1.6 -4.7 Tfp pilus assembly protein PilZ compare
Psest_0999 -1.6 -3.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3809 -1.6 -5.2 hypothetical protein compare
Psest_3850 -1.6 -1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3338 -1.5 -1.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1540 -1.5 -2.1 biotin-dependent carboxylase uncharacterized domain compare
Psest_1999 -1.5 -1.2 pseudouridine synthase compare
Psest_2104 -1.5 -2.6 IscR-regulated protein YhgI compare
Psest_0442 -1.5 -4.0 ATPases of the AAA+ class compare
Psest_3288 -1.5 -10.0 type IV-A pilus assembly ATPase PilB compare
Psest_2719 -1.4 -2.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_4170 -1.4 -2.4 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2530 -1.3 -5.2 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_4044 -1.3 -3.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_2324 -1.3 -10.3 hypothetical protein compare
Psest_3806 -1.3 -6.5 Phosphomannomutase compare
Psest_2988 -1.3 -5.4 aspartate kinase, monofunctional class compare
Psest_2323 -1.3 -9.9 Uncharacterized protein conserved in archaea compare
Psest_0491 -1.3 -8.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0722 -1.3 -6.5 Predicted ATPase compare
Psest_2325 -1.3 -8.5 alpha-L-glutamate ligase-related protein compare
Psest_0725 -1.2 -2.2 Negative regulator of beta-lactamase expression compare
Psest_0520 -1.2 -1.1 hypothetical protein compare
Psest_0958 -1.2 -6.4 Oligoketide cyclase/lipid transport protein compare
Psest_0300 -1.2 -6.7 Methyl-accepting chemotaxis protein compare
Psest_1640 -1.2 -9.0 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3286 -1.2 -5.3 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_1704 -1.2 -1.5 Dehydrogenases (flavoproteins) compare
Psest_2527 -1.2 -6.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4191 -1.2 -2.6 Transcriptional regulator compare
Psest_0170 -1.2 -5.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_0334 -1.1 -2.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3458 -1.1 -2.6 hypothetical protein compare
Psest_2944 -1.1 -1.9 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2531 -1.1 -7.1 cytochrome c oxidase accessory protein FixG compare
Psest_3988 -1.1 -5.9 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3287 -1.1 -4.5 Type II secretory pathway, component PulF compare
Psest_4005 -1.1 -4.4 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_3717 -1.1 -5.9 Tfp pilus assembly protein PilO compare
Psest_2504 -1.1 -3.9 flagellar biosynthetic protein FliS compare
Psest_2316 -1.1 -8.4 phosphoenolpyruvate synthase compare
Psest_1058 -1.0 -2.8 ribosomal-protein-alanine acetyltransferase compare
Psest_1724 -1.0 -3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0705 -1.0 -7.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1920 -1.0 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3400 -1.0 -1.2 Copper resistance protein D. compare
Psest_1782 -1.0 -2.0 Predicted transcriptional regulators compare
Psest_1242 -1.0 -1.1 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1354 -1.0 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_1185 -1.0 -2.1 heavy metal response regulator compare
Psest_3289 -1.0 -5.1 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0718 -1.0 -3.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_2810 -1.0 -3.8 5'/3'-nucleotidase SurE compare
Psest_4083 -0.9 -7.4 Predicted permease compare
Psest_1277 -0.9 -6.5 2-isopropylmalate synthase, yeast type compare
Psest_3860 -0.9 -3.1 Predicted permeases compare
Psest_3843 -0.9 -5.5 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_3719 -0.9 -7.0 type IV pilus assembly protein PilM compare
Psest_1227 -0.9 -1.8 Predicted SAM-dependent methyltransferase compare
Psest_1679 -0.9 -1.7 ribonuclease, Rne/Rng family compare
Psest_3761 -0.9 -3.1 Transcription elongation factor compare
Psest_3766 -0.9 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2218 -0.9 -2.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_3715 -0.9 -7.1 type IV pilus secretin (or competence protein) PilQ compare
Psest_3178 -0.9 -3.6 formyltetrahydrofolate deformylase compare
Psest_2643 -0.9 -1.6 Beta-glucosidase-related glycosidases compare
Psest_0154 -0.9 -2.3 Uncharacterized conserved protein compare
Psest_0028 -0.9 -2.3 Coproporphyrinogen III oxidase compare
Psest_3377 -0.9 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2864 -0.9 -2.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2809 -0.8 -1.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3039 -0.8 -1.4 periplasmic nitrate reductase, NapE protein compare
Psest_2123 -0.8 -1.5 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_3878 -0.8 -1.9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0284 -0.8 -6.5 pyridoxal phosphate enzyme, YggS family compare
Psest_1388 -0.8 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0024 -0.8 -5.2 LysM domain. compare
Psest_2894 -0.8 -1.7 addiction module antidote protein, HigA family compare
Psest_1611 -0.8 -2.8 Beta-lactamase class D compare
Psest_4309 -0.8 -2.4 ABC-type Mn/Zn transport systems, ATPase component compare
Psest_2327 -0.8 -4.1 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0922 -0.8 -2.5 alkylhydroperoxidase AhpD family core domain compare
Psest_3716 -0.8 -5.0 Tfp pilus assembly protein PilP compare
Psest_1260 -0.8 -4.3 type IV pilus biogenesis/stability protein PilW compare
Psest_0409 -0.8 -1.5 Putative homoserine kinase type II (protein kinase fold) compare
Psest_3995 -0.8 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3927 -0.8 -2.7 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2718 -0.8 -1.2 hypothetical protein compare
Psest_3322 -0.8 -6.8 TIGR02099 family protein compare
Psest_0138 -0.8 -4.5 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_3790 -0.8 -5.1 Cytochrome c5 compare
Psest_1179 -0.8 -1.3 2-hydroxy-3-oxopropionate reductase compare
Psest_4363 -0.8 -4.1 ATPases involved in chromosome partitioning compare
Psest_1659 -0.8 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_2981 -0.8 -1.3 sodium pump decarboxylases, gamma subunit compare
Psest_1087 -0.8 -1.2 uncharacterized peroxidase-related enzyme compare
Psest_1306 -0.7 -1.3 hypothetical protein compare
Psest_0139 -0.7 -3.0 ABC-type histidine transport system, ATPase component compare
Psest_0510 -0.7 -2.0 iojap-like ribosome-associated protein compare
Psest_3828 -0.7 -1.3 zinc-binding alcohol dehydrogenase family protein compare
Psest_2651 -0.7 -2.4 DNA topoisomerase I, bacterial compare
Psest_2491 -0.7 -3.5 succinyl-CoA synthetase, beta subunit compare
Psest_1111 -0.7 -1.6 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_1204 -0.7 -1.9 Transcriptional regulators compare
Psest_4163 -0.7 -2.1 hypothetical protein compare
Psest_2037 -0.7 -2.6 uroporphyrin-III C-methyltransferase compare
Psest_0697 -0.7 -2.3 ribosomal protein L9 compare
Psest_3832 -0.7 -1.7 hypothetical protein compare
Psest_4219 -0.7 -1.5 DNA polymerase I compare
Psest_3301 -0.7 -1.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_3720 -0.7 -5.9 penicillin-binding protein, 1A family compare
Psest_0359 -0.7 -2.2 Transcriptional regulators compare
Psest_2907 -0.7 -0.9 Protein of unknown function (DUF3618). compare
Psest_1814 -0.7 -4.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1958 -0.7 -2.2 Glutaredoxin-like domain (DUF836). compare
Psest_1103 -0.7 -2.1 GTP-binding protein YchF compare
Psest_0285 -0.7 -4.4 pilus retraction protein PilT compare
Psest_0691 -0.7 -4.8 ribonuclease R compare
Psest_1741 -0.7 -1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0393 -0.7 -3.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3145 -0.7 -0.9 hypothetical protein compare
Psest_3375 -0.7 -4.0 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1496 -0.7 -0.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_3180 -0.7 -4.1 Exonuclease I compare
Psest_0760 -0.7 -2.6 Polyketide cyclase / dehydrase and lipid transport. compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms