Experiment set12IT095 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

MoLS4 without B12 vitamin with Casamino acids (vit. assay) 0.05%

200 most detrimental genes:

  gene name fitness t score description  
DVU2867 +1.4 2.6 holin (TIGR) compare
DVU0008 +1.1 0.9 hypothetical protein (TIGR) compare
DVU1360 galE +1.0 0.9 UDP-glucose 4-epimerase (TIGR) compare
DVU0318 +1.0 3.7 TPR domain protein (TIGR) compare
DVU2391 +1.0 0.9 hypothetical protein (TIGR) compare
DORF12455 +1.0 4.6 SEED: helix-turn-helix protein, CopG family compare
DVU3364 +0.9 3.7 conserved hypothetical protein (TIGR) compare
DVU2873 +0.9 1.2 hypothetical protein (TIGR) compare
DVU1726 +0.9 2.1 hypothetical protein (TIGR) compare
DORF13021 +0.9 1.1 no description compare
DVU2198 +0.8 0.7 hypothetical protein (TIGR) compare
DVU3223 aspB +0.8 6.4 aspartate aminotransferase (TIGR) compare
DVU1630 ptsN +0.8 1.4 PTS system, IIA component (TIGR) compare
DVU2669 +0.8 2.6 conserved domain protein (TIGR) compare
DVU2577 +0.8 5.8 DNA-binding response regulator, LuxR family (TIGR) compare
DVU0043 fliQ +0.8 5.8 flagellar biosynthetic protein FliQ (TIGR) compare
DVU2863 +0.8 0.8 hypothetical protein (TIGR) compare
DVU1154 +0.8 0.8 hypothetical protein (TIGR) compare
DVU0001 dnaA-1 +0.8 3.5 chromosomal replication initiator protein DnaA (TIGR) compare
DVU3177 +0.8 4.7 hypothetical protein (TIGR) compare
DVU2761 +0.8 0.7 hypothetical protein (TIGR) compare
DVU0312 fliG +0.7 5.0 flagellar motor switch protein FliG (TIGR) compare
DVU1827 +0.7 3.6 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein (TIGR) compare
DVU0420 +0.7 0.9 hypothetical protein (TIGR) compare
DVU2454 +0.7 0.4 hypothetical protein (TIGR) compare
DVU1363 rfbD +0.7 3.3 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU0698 rfbC +0.7 3.9 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU0045 +0.7 4.3 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU0311 +0.7 4.4 flagellar assembly protein FliH, putative (TIGR) compare
DVU0595 +0.6 2.5 conserved hypothetical protein (TIGR) compare
DVU2510 +0.6 0.5 penicillin-binding protein (TIGR) compare
DVU2045 +0.6 3.1 hypothetical protein (TIGR) compare
DVU0859 +0.6 3.6 hypothetical protein (TIGR) compare
DVU0726 tgt +0.6 4.8 queuine tRNA-ribosyltransferase (TIGR) compare
DVU2203 +0.6 2.8 endoribonuclease, L-PSP family (TIGR) compare
DVU0289 moaC +0.6 3.8 molybdenum cofactor biosynthesis protein C (TIGR) compare
DVU3109 +0.6 1.1 iron-sulfur cluster-binding protein (TIGR) compare
DVU1251 +0.6 1.7 hypothetical protein (TIGR) compare
DVU1420 +0.6 1.0 Hpt domain protein (TIGR) compare
DORF10446 +0.6 3.8 SEED: FIG00604570: hypothetical protein compare
DORF8192 +0.6 1.8 SEED: FIG00606834: hypothetical protein compare
DVU0314 fliE +0.6 2.9 flagellar basal body component FliE (TIGR) compare
DVU0515 flgH +0.6 4.6 flagellar L-ring protein FlgH (TIGR) compare
DVU0787 +0.6 1.7 hypothetical protein (TIGR) compare
DVU2062 +0.6 1.7 ATP-dependent DNA helicase, UvrD/REP family (TIGR) compare
DVU3351 queA +0.6 4.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (TIGR) compare
DVU0315 flgC +0.6 4.5 flagellar basal-body rod protein FlgC (TIGR) compare
DORF26828 +0.6 2.1 SEED: FIG00605560: hypothetical protein compare
DVU0518 +0.5 3.6 hypothetical protein (TIGR) compare
DORF9585 +0.5 0.6 no description compare
DVU2631 +0.5 1.1 hypothetical protein (TIGR) compare
DVU3133 glpF +0.5 1.3 glycerol uptake facilitator protein (TIGR) compare
DVU0514 +0.5 3.0 FlgA family protein (TIGR) compare
DORF702 +0.5 0.8 no description compare
DVU0773 +0.5 0.9 hypothetical protein (TIGR) compare
DVU0669 +0.5 1.6 hypothetical protein (TIGR) compare
DVU1682 +0.5 1.6 GAF domain protein (TIGR) compare
DVU2362 thiE-2 +0.5 1.3 thiamine-phosphate pyrophosphorylase (TIGR) compare
DVU0689 rnhA +0.5 0.9 ribonuclease HI (TIGR) compare
DVU0513 flgG +0.5 3.7 flagellar basal-body rod protein FlgG (TIGR) compare
DVU1283 galU +0.5 2.6 UTP-glucose-1-phosphate uridylyltransferase (TIGR) compare
DVU2915 +0.5 1.8 hypothetical protein (TIGR) compare
DVU1862 +0.5 2.6 GGDEF domain protein (TIGR) compare
DVU2855 +0.5 1.1 tail/DNA circulation protein, putative (TIGR) compare
DVU1444 flgD +0.5 3.5 basal-body rod modification protein FlgD (TIGR) compare
DVU0307 +0.5 3.7 flagella basal body rod domain protein (TIGR) compare
DVU1063 flrC +0.5 2.2 transcriptional regulatory protein (TIGR) compare
DVU2212 +0.5 3.0 conserved hypothetical protein (TIGR) compare
DVU1679 idi +0.5 1.3 isopentenyl-diphosphate delta-isomerase (TIGR) compare
DVU2332 proC +0.5 0.7 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
DVU1442 +0.5 1.5 flagellin FlaG, putative (TIGR) compare
DVU1253 +0.5 1.1 hypothetical protein (TIGR) compare
DVU1946 oorB +0.5 3.6 pyruvate ferredoxin oxidoreductase, beta subunit, putative (TIGR) compare
DVU0913 +0.5 2.1 conserved hypothetical protein (TIGR) compare
DVU0590 +0.5 1.2 hypothetical protein (TIGR) compare
DVU3232 flhA +0.5 3.7 flagellar biosynthetic protein FlhA (TIGR) compare
DVU0910 fliM +0.5 3.0 flagellar motor switch protein FliM (TIGR) compare
DVU0516 flgI +0.5 2.9 flagellar P-ring protein FlgI (TIGR) compare
DVU0519 +0.5 4.0 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU2578 +0.5 2.9 response regulator (TIGR) compare
DVU0912 +0.5 1.5 conserved domain protein (TIGR) compare
DVU0034 +0.5 2.7 DSBA-like thioredoxin domain protein (TIGR) compare
DVU0620 +0.5 0.6 endoribonuclease, L-PSP family (TIGR) compare
DVUA0081 +0.5 0.8 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVU0899 +0.5 0.8 conserved hypothetical protein (TIGR) compare
DVU1632 +0.5 2.2 PTS system, IIA component (TIGR) compare
DVU0044 fliP +0.5 2.2 flagellar biosynthetic protein fliP (TIGR) compare
DVU0024 +0.5 0.5 conserved hypothetical protein (TIGR) compare
DVU2809 +0.5 2.5 cytochrome c3 (TIGR) compare
DVU1944 oorD +0.4 1.8 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU0863 +0.4 3.5 flagellar hook-associated protein 2, putative (TIGR) compare
DVU2512 mraW +0.4 1.0 S-adenosyl-methyltransferase MraW (TIGR) compare
DVU3233 flhB +0.4 2.9 flagellar biosynthetic protein FlhB (TIGR) compare
DVU2232 +0.4 2.5 hypothetical protein (TIGR) compare
DVU3301 +0.4 2.7 hypothetical protein (TIGR) compare
DVU2176 +0.4 0.8 hypothetical protein (TIGR) compare
DVU0063 +0.4 0.8 transcriptional regulator, MarR family (TIGR) compare
DVU2539 +0.4 0.4 hypothetical protein (TIGR) compare
DVU0313 fliF +0.4 3.0 flagellar M-ring protein FliF (TIGR) compare
DVU0281 +0.4 0.5 exopolysaccharide biosynthesis protein, putative (TIGR) compare
DVU2649 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0512 flgF +0.4 2.4 flagellar basal-body rod protein, putative (TIGR) compare
DVU3234 +0.4 2.2 flagellar biosynthetic protein FliR (TIGR) compare
DVU1480 +0.4 1.2 conserved domain protein (TIGR) compare
DVU0310 fliI +0.4 2.7 flagellum-specific ATP synthase FliI (TIGR) compare
DORF38058 +0.4 0.4 SEED: FIG00604017: hypothetical protein compare
DVU0359 +0.4 2.4 HesB-like domain (TIGR) compare
DVU0520 +0.4 3.0 flagellar hook-associated protein FlgL, putative (TIGR) compare
DVU0858 +0.4 2.2 lipoprotein, putative (TIGR) compare
DVU1838 trxB-2 +0.4 1.3 thioredoxin reductase (TIGR) compare
DVU0339 serA +0.4 2.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein (TIGR) compare
DVU2345 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0117 +0.4 2.0 glycosyl transferase, group 2 family protein (TIGR) compare
DVU1465 +0.4 2.6 CgeB family protein (TIGR) compare
DVU3009 +0.4 2.9 radical SAM domain protein (TIGR) compare
DVU1045 +0.4 2.4 hypothetical protein (TIGR) compare
DVU0074 +0.4 1.8 polysaccharide biosynthesis domain protein (TIGR) compare
DVU2291 +0.4 0.8 carbon monoxide-induced hydrogenase CooH, putative (TIGR) compare
DVU2169 +0.4 1.7 conserved hypothetical protein (TIGR) compare
DVU1093 +0.4 1.2 HAD-superfamily hydrolase, subfamily IA, variant 3 (TIGR) compare
DVU0532 hmcE +0.4 1.3 HmcE, 25.3 kd protein in hmc operon (voordouw) compare
DVU0451 +0.4 2.7 chloride channel family protein (TIGR) compare
DVU0793 +0.4 2.4 hypothetical protein (TIGR) compare
DVU0862 +0.4 1.8 flagellar protein FliS/hypothetical protein, fusion (TIGR) compare
DVU1686 +0.4 2.3 ATPase, AAA family (TIGR) compare
DVU2909 +0.4 2.1 transcriptional regulator, MarR family (TIGR) compare
DVU0361 ilvH +0.4 1.1 acetolactate synthase III, small subunit, putative (TIGR) compare
DVU1863 +0.4 2.2 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU2479 pstA-2 +0.4 2.5 phosphate ABC transporter, permease protein, putative (TIGR) compare
DORF768 +0.4 1.6 no description compare
DVU2797 +0.4 1.6 NADH:quinone oxidoreductase subunit RnfB (Shelley Haveman) compare
DVU0167 oppC +0.4 1.2 oligopeptide/dipeptide ABC transporter, permease protein (TIGR) compare
DVU1464 +0.4 2.7 heptosyltransferase family protein (TIGR) compare
DVU0410 +0.4 2.3 hypothetical protein (TIGR) compare
DVU1609 dapB +0.4 1.5 dihydrodipicolinate reductase (TIGR) compare
DVU2600 +0.4 0.8 hypothetical protein (TIGR) compare
DVU1996 +0.4 1.0 quaternary ammonium compound-resistance protein QacC, putative (TIGR) compare
DVU0046 fliN +0.4 1.7 flagellar motor switch protein FliN (TIGR) compare
DVU2896 +0.4 2.9 TPR domain protein (TIGR) compare
DVU1276 +0.3 2.4 hypothetical protein (TIGR) compare
DVU0295 +0.3 2.8 amine oxidase, flavin-containing (TIGR) compare
DVU2209 +0.3 1.6 conserved hypothetical protein (TIGR) compare
DVU1132 +0.3 1.3 conserved hypothetical protein (TIGR) compare
DVU3229 fliA +0.3 1.4 RNA polymerase sigma factor for flagellar operon FliA (TIGR) compare
DVU1255 +0.3 0.8 Sua5/YciO/YrdC/YwlC family protein (TIGR) compare
DVU0951 moeA-2 +0.3 1.7 molybdopterin biosynthesis MoeA protein, putative (TIGR) compare
DVU0937 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2623 +0.3 1.8 hypothetical protein (TIGR) compare
DVU1900 +0.3 1.5 conserved hypothetical protein (TIGR) compare
DVU1409 +0.3 1.9 hypothetical protein (TIGR) compare
DVU0231 +0.3 1.5 hypothetical protein (TIGR) compare
DVU2742 livM +0.3 1.9 high-affinity branched chain amino acid ABC transporter, permease protein (TIGR) compare
DVU2644 +0.3 0.9 transcriptional regulator, GntR family (TIGR) compare
DVU2833 +0.3 2.4 hypothetical protein (TIGR) compare
DVU2022 +0.3 2.4 conserved hypothetical protein (TIGR) compare
DVU0693 narH +0.3 1.8 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative (TIGR), containing cytochrome c heme-binding site (VIMSS_AUTO) compare
DVU2455 +0.3 1.2 NAD-dependent epimerase/dehydratase family protein (TIGR) compare
DVU2582 +0.3 1.6 transcriptional regulator, TetR family (TIGR) compare
DVU0529 rrf2 +0.3 1.7 Rrf2 protein (voordouw) compare
DVUA0074 +0.3 1.4 sulfotransferase family protein (TIGR) compare
DVU3360 parB +0.3 1.8 ParB family protein (TIGR) compare
DVU2811 +0.3 1.4 formate dehydrogenase, beta subunit, putative (TIGR) compare
DVU0316 flgB +0.3 1.0 flagellar basal-body rod protein FlgB (TIGR) compare
DVU0257 +0.3 0.5 acetyltransferase, GNAT family (TIGR) compare
DVU1247 +0.3 1.3 hypothetical protein (TIGR) compare
DVU0654 +0.3 2.2 peptidase, U32 family (TIGR) compare
DVU3378 +0.3 2.1 YbaK/EbsC protein (TIGR) compare
DVU2904 +0.3 2.0 radical SAM enzyme, Cfr family (TIGR) compare
DVU0904 recJ +0.3 1.1 single-stranded-DNA-specific exonuclease RecJ (TIGR) compare
DVU0366 +0.3 2.0 5-formyltetrahydrofolate cyclo-ligase family protein (TIGR) compare
DVU0551 livF +0.3 1.1 high-affinity branched-chain amino acid ABC transporter ATP-binding protein (TIGR) compare
DVU0790 +0.3 1.6 radical SAM protein, TIGR01212 family (TIGR) compare
DVU2444 flaB3 +0.3 1.9 flagellin (TIGR) compare
DVU2151 +0.3 1.5 conserved hypothetical protein (TIGR) compare
DVU3304 +0.3 2.3 SEED: integral membrane sensor signal transduction histidine kinase compare
DVUA0001 +0.3 0.3 hypothetical protein (TIGR) compare
DVU1692 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2437 +0.3 2.0 ABC transporter, permease protein (TIGR) compare
DVU2670 +0.3 1.4 hypothetical protein (TIGR) compare
DVU1185 +0.3 1.0 colicin V production family protein (TIGR) compare
DVUA0105 +0.3 1.2 conserved hypothetical protein (TIGR) compare
DVU0821 +0.3 0.9 conserved hypothetical protein (TIGR) compare
DVU0542 +0.3 1.1 universal stress protein family (TIGR) compare
DVU1262 pilT-1 +0.3 1.4 twitching motility protein PilT (TIGR) compare
DORF10279 +0.3 1.1 no description compare
DVU1958 +0.3 2.1 sensory box histidine kinase (TIGR) compare
DVU1408 +0.3 2.2 hypothetical protein (TIGR) compare
DVU0772 +0.3 1.0 hypothetical protein (TIGR) compare
DVU3303 lon +0.3 2.6 ATP-dependent protease La, truncation (TIGR) compare
DORF20226 +0.3 0.9 no description compare
DVU0039 +0.3 1.8 C4-type zinc finger protein, DksA/TraR family (TIGR) compare
DVU0561 +0.3 0.6 glycosyl transferase, group 1 family protein (TIGR) compare
DVU2229 motA-2 +0.3 1.5 chemotaxis protein MotA (TIGR) compare
DVU1079 trmE +0.3 0.8 tRNA modification GTPase TrmE (TIGR) compare
DVU2498 +0.3 0.9 hypothetical protein (TIGR) compare
DVU1700 +0.3 1.2 metallo-beta-lactamase family protein (TIGR) compare
DVU1943 +0.3 0.8 hypothetical protein (TIGR) compare
DVUA0071 +0.3 0.5 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVUA0006 mgtE +0.3 0.8 magnesium transporter MgtE, putative (TIGR) compare
DVU0280 wbaZ-2 +0.3 0.7 glycosyl transferase, group 1 family protein (TIGR) compare


Specific Phenotypes

None in this experiment

For Desulfovibrio vulgaris Hildenborough JW710 in nutrient experiments