Experiment set12IT058 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

MoYLS4 with Nickel Chloride 0.75mM

200 most detrimental genes:

  gene name fitness t score description  
DORF9585 +1.3 1.6 no description compare
DVU2863 +1.2 1.6 hypothetical protein (TIGR) compare
DVU1844 +1.0 0.7 septum formation initiator family protein (TIGR) compare
DVU1253 +0.9 2.1 hypothetical protein (TIGR) compare
DVU1609 dapB +0.9 2.8 dihydrodipicolinate reductase (TIGR) compare
DVU1944 oorD +0.9 1.9 pyruvate ferredoxin oxidoreductase, iron-sulfur binding subunit, putative (TIGR) compare
DVU2200 +0.8 1.0 hypothetical protein (TIGR) compare
DVU2946 +0.8 3.4 hypothetical protein (TIGR) compare
DVU3364 +0.8 2.9 conserved hypothetical protein (TIGR) compare
DVU0024 +0.8 0.9 conserved hypothetical protein (TIGR) compare
DVU2391 +0.8 0.6 hypothetical protein (TIGR) compare
DVU1853 +0.7 0.8 hypothetical protein (TIGR) compare
DVU0830 ptsH +0.7 1.0 phosphocarrier protein HPr (TIGR) compare
DVU3177 +0.6 2.8 hypothetical protein (TIGR) compare
DVU1806 mgtE +0.6 2.9 magnesium transporter (TIGR) conserved
DVU1280 +0.6 2.1 conserved hypothetical protein TIGR00159 (TIGR) compare
DVU2582 +0.6 2.7 transcriptional regulator, TetR family (TIGR) compare
DVU0595 +0.6 2.5 conserved hypothetical protein (TIGR) compare
DVU1099 +0.6 2.6 tail fiber assembly protein, putative (TIGR) compare
DVU1489 +0.6 1.5 hypothetical protein (TIGR) compare
DVU1009 +0.6 1.2 hypothetical protein (TIGR) compare
DVU1360 galE +0.6 0.5 UDP-glucose 4-epimerase (TIGR) compare
DVU1726 +0.6 1.2 hypothetical protein (TIGR) compare
DORF13021 +0.6 1.3 no description compare
DVU1221 +0.6 2.2 hypothetical protein (TIGR) compare
DVU0937 +0.6 1.7 hypothetical protein (TIGR) compare
DVU0618 +0.6 0.6 hypothetical protein (TIGR) compare
DVU1816 +0.6 2.0 conserved hypothetical protein (TIGR) compare
DVU2510 +0.6 0.4 penicillin-binding protein (TIGR) compare
DVU2023 +0.5 2.4 hypothetical protein (TIGR) compare
DVU0934 +0.5 1.6 hypothetical protein (TIGR) compare
DVU1946 oorB +0.5 3.0 pyruvate ferredoxin oxidoreductase, beta subunit, putative (TIGR) compare
DORF10286 +0.5 2.4 no description compare
DVU2539 +0.5 0.5 hypothetical protein (TIGR) compare
DVU1154 +0.5 0.5 hypothetical protein (TIGR) compare
DORF47110 +0.5 1.1 no description compare
DVU2060 +0.5 1.1 hypothetical protein (TIGR) compare
DVU2548 acpD +0.5 2.0 acyl carrier protein phosphodiesterase (TIGR) compare
DVU0232 +0.5 0.3 hypothetical protein (TIGR) compare
DVU3325 +0.5 1.5 hypothetical protein (TIGR) compare
DVU1521 +0.5 0.3 hypothetical protein (TIGR) compare
DVU1084 pstB-1 +0.5 2.4 phosphate ABC transporter, ATP-binding protein (TIGR) compare
DVU2578 +0.5 3.2 response regulator (TIGR) compare
DVU0702 +0.5 1.9 cytochrome c family protein (TIGR) compare
DVU2097 +0.5 1.0 transcriptional regulator, putative (TIGR) compare
DVU2150 dksA +0.5 0.7 dnaK suppressor protein, putative (TIGR) compare
DVU1692 +0.5 2.1 hypothetical protein (TIGR) compare
DVU1700 +0.5 2.6 metallo-beta-lactamase family protein (TIGR) compare
DVU2034 +0.5 1.3 hypothetical protein (TIGR) compare
DVU2644 +0.5 1.4 transcriptional regulator, GntR family (TIGR) compare
DVU1460 +0.5 0.9 hypothetical protein (TIGR) compare
DORF8571 +0.5 0.9 SEED: FIG00603598: hypothetical protein compare
DVU1685 +0.5 2.0 conserved hypothetical protein TIGR00046 (TIGR) compare
DORF10446 +0.5 2.0 SEED: FIG00604570: hypothetical protein compare
DVU3049 +0.5 2.1 hemerythrin family protein (TIGR) compare
DVU1033 cinA +0.5 0.4 competence/damage-inducible protein CinA protein, truncation (TIGR) compare
DVU0590 +0.5 1.4 hypothetical protein (TIGR) compare
DVU2092 moeB +0.5 1.6 thiF family protein (TIGR) compare
DVU1827 +0.5 3.0 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein (TIGR) compare
DVU0793 +0.5 2.8 hypothetical protein (TIGR) compare
DVU2473 +0.5 0.3 hypothetical protein (TIGR) compare
DVU2577 +0.5 2.0 DNA-binding response regulator, LuxR family (TIGR) compare
DVU1251 +0.5 2.4 hypothetical protein (TIGR) compare
DVU2051 +0.5 1.9 hypothetical protein (TIGR) compare
DVU0581 +0.5 2.5 response regulator/anti-anti-sigma factor (TIGR) compare
DVU1403 cobO +0.5 2.2 cob(I)alamin adenosyltransferase (TIGR) compare
DVU1736 +0.4 2.5 hypothetical protein (TIGR) compare
DVU1272 gspE +0.4 2.8 general secretion pathway protein E, putative (TIGR) compare
DVU0693 narH +0.4 2.0 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit, putative (TIGR), containing cytochrome c heme-binding site (VIMSS_AUTO) compare
DVU0630 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0215 +0.4 2.4 tail protein, putative (TIGR) compare
DVU0593 LysE +0.4 1.1 L-lysine exporter, putative (TIGR) compare
DVU0906 lipB +0.4 2.2 lipoate-protein ligase B (TIGR) compare
DVU2308 +0.4 2.8 conserved hypothetical protein TIGR00022 (TIGR) compare
DVU0028 csaA +0.4 2.2 chaperone CsaA (TIGR) compare
DVU0379 +0.4 1.4 transcriptional regulator, putative (TIGR) compare
DVU1341 znuC +0.4 2.7 permease component of zinc ABC transporter (Dmitry Rodionov) compare
DVU1257 +0.4 1.3 RNA-binding protein (TIGR) compare
DVU2169 +0.4 2.7 conserved hypothetical protein (TIGR) compare
DVU0305 fd II +0.4 1.7 ferredoxin II (Sean Caffrey) compare
DVU0314 fliE +0.4 1.0 flagellar basal body component FliE (TIGR) compare
DORF18707 +0.4 0.3 no description compare
DVU2915 +0.4 1.1 hypothetical protein (TIGR) compare
DVU1262 pilT-1 +0.4 1.5 twitching motility protein PilT (TIGR) compare
DVU2121 +0.4 3.0 response regulator (TIGR) compare
DVU1380 +0.4 1.3 hypothetical protein (TIGR) compare
DVU0205 +0.4 1.1 hypothetical protein (TIGR) compare
DVU0043 fliQ +0.4 1.7 flagellar biosynthetic protein FliQ (TIGR) compare
DVU1331 +0.4 1.5 transcriptional regulator, LysR family (TIGR) compare
DVU1926 +0.4 1.5 conserved hypothetical protein (TIGR) compare
DVU0376 +0.4 0.7 hypothetical protein (TIGR) compare
DVU1598 +0.4 1.9 conserved hypothetical protein (TIGR) compare
DVU3306 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0899 +0.4 0.6 conserved hypothetical protein (TIGR) compare
DVU0420 +0.4 0.5 hypothetical protein (TIGR) compare
DVU2026 +0.4 1.1 conserved hypothetical protein (TIGR) compare
DVU2785 pdhR +0.4 2.2 transcriptional regulator, GntR family (TIGR) compare
DVU_tRNA-Arg-1 tRNA-Arg +0.4 0.6 tRNA with anticodon ACG for Arg (VIMSS-AUTO) compare
DVU2498 +0.4 1.2 hypothetical protein (TIGR) compare
DVU2183 +0.4 0.6 hypothetical protein (TIGR) compare
DVU1002 +0.4 2.3 conserved domain protein (TIGR) compare
DVU2649 +0.4 1.1 hypothetical protein (TIGR) compare
DVU2624 +0.4 1.5 hypothetical protein (TIGR) compare
DVU2867 +0.4 0.6 holin (TIGR) compare
DVU2807 +0.4 1.8 biopolymer transport protein, ExbD/TolR family (TIGR) compare
DVU2873 +0.4 0.4 hypothetical protein (TIGR) compare
DVU0542 +0.4 1.2 universal stress protein family (TIGR) compare
DVU1264 +0.4 2.0 transglycosylase SLT domain protein (TIGR) compare
DVU2408 +0.4 1.2 hypothetical protein (TIGR) compare
DVU3047 +0.4 1.8 aminotransferase, class IV (TIGR) compare
DVU0769 +0.4 2.0 pyridoxal kinase, putative (TIGR) compare
DVU2232 +0.4 2.1 hypothetical protein (TIGR) compare
DVU0302 +0.4 1.2 chemotaxis protein CheX, putative (TIGR) compare
DVU1082 +0.4 1.4 3- 5 exonuclease domain protein (TIGR) compare
DVU1218 +0.4 2.2 conserved hypothetical protein (TIGR) compare
DVU0312 fliG +0.4 2.7 flagellar motor switch protein FliG (TIGR) compare
DVU2886 +0.4 2.3 transcriptional regulator, AraC family (TIGR) compare
DORF35977 +0.4 2.1 no description compare
DVU2768 +0.4 2.1 comF family protein (TIGR) compare
DVU3378 +0.4 1.6 YbaK/EbsC protein (TIGR) compare
DVU2012 +0.4 0.3 hypothetical protein (TIGR) compare
DVU2939 +0.4 2.3 conserved hypothetical protein (TIGR) compare
DVU0620 +0.4 0.6 endoribonuclease, L-PSP family (TIGR) compare
DVU1485 +0.4 1.8 hypothetical protein (TIGR) compare
DVU1943 +0.4 0.9 hypothetical protein (TIGR) compare
DVU1557 +0.4 1.7 hypothetical protein (TIGR) compare
DVU1023 +0.4 1.6 rhomboid family protein (TIGR) compare
DVU0200 +0.4 0.7 major head protein (TIGR) compare
DVU1276 +0.4 2.4 hypothetical protein (TIGR) compare
DVU3046 +0.4 1.6 glycosyl transferase, group 1 family protein (TIGR) compare
DVU2251 +0.3 1.6 DNA-binding protein (TIGR) compare
DVU1621 +0.3 0.9 hypothetical protein (TIGR) compare
DVU0802 +0.3 0.3 hypothetical protein (TIGR) compare
DVU0903 +0.3 1.8 HD domain protein (TIGR) compare
DVU1538 +0.3 1.2 hypothetical protein (TIGR) compare
DVU2918 +0.3 1.1 hypothetical protein (TIGR) compare
DVU2203 +0.3 0.8 endoribonuclease, L-PSP family (TIGR) compare
DVU2192 +0.3 1.1 hypothetical protein (TIGR) compare
DVU0480 +0.3 1.9 hypothetical protein (TIGR) compare
DVU1273 +0.3 2.2 bacterial type II/III secretion system protein (TIGR) compare
DVU0311 +0.3 1.5 flagellar assembly protein FliH, putative (TIGR) compare
DVU1588 hpt +0.3 0.9 hypoxanthine phosphoribosyltransferase (TIGR) compare
DVU0657 +0.3 0.4 heat shock protein, Hsp20 family (TIGR) compare
DVU2411 +0.3 0.9 EF hand domain protein (TIGR) compare
DVU1632 +0.3 1.4 PTS system, IIA component (TIGR) compare
DVU0159 +0.3 2.2 thioesterase family protein (TIGR) compare
DVU0439 +0.3 0.9 YCII-related domain protein (TIGR) compare
DORF26828 +0.3 1.4 SEED: FIG00605560: hypothetical protein compare
DVU1850 +0.3 0.8 CBS domain protein (TIGR) compare
DVU2809 +0.3 1.4 cytochrome c3 (TIGR) compare
DVU1892 +0.3 1.7 glycosyl transferase, group 2 family protein (TIGR) compare
DVU0252 +0.3 0.8 hypothetical protein (TIGR) compare
DVU1589 +0.3 1.3 hypothetical protein (TIGR) compare
DVU1056 nikO +0.3 2.0 component of nickel ABC transport system (Dmitry Rodionov) compare
DVU1900 +0.3 1.8 conserved hypothetical protein (TIGR) compare
DVU3199 +0.3 2.4 conserved hypothetical protein TIGR00103 (TIGR) compare
DVU2528 +0.3 0.5 hypothetical protein (TIGR) compare
DVU0103 fepC +0.3 1.9 cation ABC transporter, ATP-binding protein, putative (TIGR) compare
DVU1266 +0.3 2.4 hypothetical protein (TIGR) compare
DVU0914 cobS +0.3 0.8 cobalamin-5-phosphate synthase (TIGR) compare
DVU0136 +0.3 1.5 hypothetical protein (TIGR) compare
DVU1518 +0.3 0.7 transcriptional regulator cI, truncation (TIGR) compare
DORF27863 +0.3 2.0 no description compare
DVU1263 pppA +0.3 1.7 type IV prepilin-like proteins leader peptidase (TIGR) compare
DVU3351 queA +0.3 2.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (TIGR) compare
DVU2151 +0.3 1.8 conserved hypothetical protein (TIGR) compare
DVU1085 phoU +0.3 1.4 phosphate transport system protein PhoU (TIGR) compare
DVU2840 +0.3 0.8 conserved hypothetical protein (TIGR) compare
DVU2364 +0.3 1.0 aminotransferase, classes I and II (TIGR) compare
DVU3208 +0.3 1.0 membrane protein, putative (TIGR) compare
DVU0664 +0.3 1.3 cysteine desulfurase (TIGR) compare
DVU0915 +0.3 1.1 conserved hypothetical protein (TIGR) compare
DVU0414 tme +0.3 2.1 NADP-dependent malic enzyme-related protein (TIGR) compare
DORF6830 +0.3 1.6 SEED: FIG00602532: hypothetical protein compare
DVU1742 +0.3 0.9 prevent-host-death family protein (TIGR) compare
DVU1550 +0.3 1.3 phosphoglycerate mutase family protein (TIGR) compare
DVU2160 +0.3 1.1 hypothetical protein (TIGR) compare
DVU1073 +0.3 1.9 conserved domain protein (TIGR) compare
DVU0244 +0.3 1.6 hypothetical protein (TIGR) compare
DVU0773 +0.3 0.4 hypothetical protein (TIGR) compare
DVU1935 phnE +0.3 1.4 phosphonate ABC transporter, permease protein (TIGR) compare
DVU0726 tgt +0.3 1.8 queuine tRNA-ribosyltransferase (TIGR) compare
DVU1505 +0.3 1.2 holin, putative (TIGR) compare
DVU3032 +0.3 1.5 conserved hypothetical protein (TIGR) compare
DVU0654 +0.3 1.8 peptidase, U32 family (TIGR) compare
DVU0163 +0.3 1.8 lipoprotein, putative (TIGR) compare
DVU0898 +0.3 1.6 conserved hypothetical protein (TIGR) compare
DVU1811 +0.3 1.8 protoheme IX farnesyltransferase, putative (TIGR) compare
DVU1687 +0.3 1.1 glycosyl transferase, group 2 family protein (TIGR) compare
DORF12467 +0.3 0.7 SEED: protein of unknown function DUF497 compare
DVU0320 +0.3 1.1 conserved hypothetical protein (TIGR) compare
DVU0832 +0.3 1.9 tetrapyrrole methylase family protein (TIGR) compare
DVUA0150 +0.3 1.5 bacterial extracellular solute-binding protein, family 3 (TIGR) compare
DVU1388 +0.3 2.1 conserved hypothetical protein (TIGR) compare
DVU3213 +0.3 1.5 hypothetical protein (TIGR) compare
DVU1045 +0.3 2.0 hypothetical protein (TIGR) compare
DVU1682 +0.3 0.9 GAF domain protein (TIGR) compare
DVU2128 +0.3 0.9 hypothetical protein (TIGR) compare
DVU0571 ald +0.3 1.9 alanine dehydrogenase (TIGR) compare
DVU3186 +0.3 2.0 hypothetical protein (TIGR) compare


Specific Phenotypes

For 3 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Desulfovibrio vulgaris Hildenborough JW710

For stress Nickel (II) chloride hexahydrate across organisms