Experiment set12IT042 for Agrobacterium fabrum C58

Compare to:

Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu0039 -3.7 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1470 -3.5 -2.2 Camphor resistance protein compare
Atu1030 -3.5 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2125 -3.3 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu3763 -3.0 -2.1 hypothetical protein compare
Atu4317 -2.6 -2.7 TetR family transcriptional regulator compare
Atu0041 -2.6 -2.5 glutamine amidotransferase compare
Atu4773 -2.5 -2.8 two component response regulator compare
Atu2036 -2.4 -13.5 acetolactate synthase III, large subunit compare
Atu1588 -2.4 -9.6 homoserine dehydrogenase compare
Atu0399 -2.3 -7.1 dihydroorotase compare
Atu3908 -2.2 -8.9 GntR family transcriptional regulator compare
Atu0086 -2.2 -2.3 ribosome-binding factor A compare
Atu2728 -2.2 -4.4 beta (1-->2) glucan export ATP-binding protein compare
Atu2554 -2.2 -3.3 lysyl-tRNA synthetase compare
Atu1417 -2.1 -9.3 enoyl-CoA hydratase compare
Atu0141 -2.0 -2.3 cytochrome O ubiquinol oxidase subunit I compare
Atu0971 -2.0 -3.5 two component sensor kinase compare
Atu6098 -1.8 -1.1 transcriptional regulator, HTH family compare
Atu0400 -1.8 -3.6 orotate phosphoribosyltransferase compare
Atu0038 -1.8 -3.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0486 -1.8 -4.9 dihydroorotate dehydrogenase compare
Atu0298 -1.7 -5.9 orotidine 5 compare
Atu2067 -1.7 -1.5 hypothetical protein compare
Atu0331 -1.7 -3.4 sigma-54 modulation protein compare
Atu1163 -1.7 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3707 -1.6 -2.7 phosphoserine aminotransferase compare
Atu1308 -1.5 -4.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0723 -1.5 -2.1 FAD dependent oxidoreductase compare
Atu0040 -1.5 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2073 -1.5 -3.5 membrane protein compare
Atu1688 -1.5 -3.8 indole-3-glycerol-phosphate synthase compare
Atu0434 -1.5 -1.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu8167 -1.5 -7.6 putative transmembrane protein compare
Atu0031 -1.4 -1.7 PTS system, IIA component compare
Atu8087 -1.4 -1.1 putative peptidoglycan binding protein compare
Atu0977 -1.4 -3.7 serine protease DO-like protease compare
Atu0050 -1.4 -4.1 two component response regulator compare
Atu2237 -1.3 -5.2 cytochrome c1 compare
Atu0017 -1.3 -2.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0184 -1.3 -1.8 glucokinase compare
Atu0678 -1.3 -4.5 histidyl-tRNA synthetase compare
Atu3706 -1.3 -5.4 D-3-phosphoglycerate dehydrogenase compare
Atu1307 -1.3 -3.3 dihydroorotase compare
Atu1619 -1.3 -2.8 protein-export membrane protein SECG compare
Atu1904 -1.2 -1.8 transcriptional regulator compare
Atu3598 -1.2 -1.9 thiol:disulfide interchange protein compare
Atu1644 -1.2 -3.3 hypothetical protein compare
Atu0784 -1.2 -2.4 hypothetical protein compare
Atu0422 -1.2 -1.2 ABC transporter, membrane spanning protein compare
Atu3754 -1.2 -5.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0051 -1.1 -4.1 two component sensor kinase compare
Atu3469 -1.1 -2.1 phosphoglyceromutase compare
Atu0679 -1.1 -4.0 ATP phosphoribosyltransferase compare
Atu3727 -1.1 -3.3 hypothetical protein compare
Atu1528 -1.1 -6.9 nitrogen fixation protein FixI compare
Atu0030 -1.1 -1.6 phosphocarrier protein HPr compare
Atu1537 -1.1 -7.0 cytochrome-c oxidase, FixN chain compare
Atu2650 -1.1 -5.4 glycerol-3-phosphate dehydrogenase compare
Atu1602 -1.1 -4.0 transcriptional activator, Crp family compare
Atu4072 -1.1 -1.2 nodulation protein N compare
Atu0769 -1.1 -1.4 protoheme IX farnesyltransferase compare
Atu1468 -1.1 -6.0 hypothetical protein compare
Atu0895 -1.1 -2.7 ABC transporter, substrate binding protein compare
Atu2439 -1.1 -1.6 hypothetical protein compare
Atu0025 -1.1 -1.8 hypothetical protein compare
Atu2640 -1.0 -3.9 hypothetical protein compare
Atu2522 -1.0 -7.2 agrobacterium chromosomal virulence protein B compare
Atu0941 -1.0 -1.0 hypothetical protein compare
Atu2207 -1.0 -1.8 two component sensor kinase compare
Atu0153 -1.0 -3.9 transcriptional regulator, Fur family compare
Atu2183 -1.0 -4.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2790 -1.0 -1.1 3-isopropylmalate dehydratase, small subunit compare
Atu2057 -1.0 -2.2 DNA helicase II compare
Atu2238 -1.0 -3.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0537 -1.0 -4.2 histidinol dehydrogenase compare
Atu1447 -1.0 -1.5 two component sensor kinase compare
Atu1846 -1.0 -1.4 hypothetical protein compare
Atu0419 -1.0 -1.6 two component sensor kinase compare
Atu1534 -0.9 -4.6 cytochrome-c oxidase, FixP chain compare
Atu2193 -0.9 -1.0 hypothetical protein compare
Atu3353 -0.9 -6.5 mannose-1-phosphate guanylyltransferase compare
Atu1677 -0.9 -3.3 queuine tRNA-ribosyltransferase compare
Atu4711 -0.9 -4.5 two component sensor kinase compare
Atu2239 -0.9 -1.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1750 -0.9 -2.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu3311 -0.9 -7.3 phosphomannose isomerase compare
Atu4616 -0.9 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu1535 -0.9 -2.1 cytochrome c oxidase, FixQ chain compare
Atu0062 -0.9 -4.5 transcriptional regulator, ROK family compare
Atu0026 -0.9 -1.0 hypothetical protein compare
Atu1074 -0.9 -6.3 NAD/NADP dependent oxidoreductase compare
Atu1359 -0.9 -0.9 dnaK deletion suppressor protein compare
Atu0876 -0.9 -1.4 superoxide dismutase compare
Atu2791 -0.9 -4.3 3-isopropylmalate dehydrogenase compare
Atu3486 -0.9 -2.9 DeoR family transcriptional regulator compare
Atu3608 -0.9 -3.8 hypothetical protein compare
Atu1527 -0.9 -2.6 nitrogen fixation protein FixS compare
Atu0703 -0.9 -2.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu5451 -0.8 -0.9 hypothetical protein compare
Atu4161 -0.8 -1.9 hypothetical protein compare
Atu0421 -0.8 -1.3 ABC transporter, membrane spanning protein compare
Atu0477 -0.8 -1.4 hypothetical protein compare
Atu1364 -0.8 -3.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4446 -0.8 -6.4 hypothetical protein compare
Atu3798 -0.8 -4.0 TetR family transcriptional regulator compare
Atu2616 -0.8 -3.5 hypothetical protein compare
Atu2584 -0.8 -2.6 hypothetical protein compare
Atu0401 -0.8 -3.1 fructokinase compare
Atu1028 -0.8 -1.8 hypothetical protein compare
Atu1173 -0.8 -4.7 MFS permease compare
Atu4346 -0.8 -4.2 hypothetical protein compare
Atu3732 -0.8 -5.1 hemolysin compare
Atu0043 -0.8 -1.7 imidazoleglycerol-phosphate dehydratase compare
Atu1536 -0.8 -3.0 cytochrome C oxidase, FixO chain compare
Atu8138 -0.8 -1.2 hypothetical protein compare
Atu5125 -0.8 -2.4 GntR family transcriptional regulator compare
Atu4149 -0.8 -4.6 UDP-glucose 6-dehydrogenase compare
Atu0809 -0.8 -1.4 hypothetical protein compare
Atu1205 -0.8 -4.6 threonine dehydratase compare
Atu4514 -0.8 -4.5 RpiR family transcriptional regulator compare
Atu0149 -0.8 -1.7 enoyl-(acyl-carrier-protein) reductase compare
Atu1254 -0.8 -1.7 transcriptional regulator, ArsR family compare
Atu4610 -0.7 -5.0 sugar nucleotide epimerase/dehydratase compare
Atu3468 -0.7 -0.8 hypothetical protein compare
Atu2040 -0.7 -2.0 phosphoserine phosphatase compare
Atu4139 -0.7 -1.7 hypothetical protein compare
Atu0973 -0.7 -3.3 cycH protein compare
Atu3485 -0.7 -4.3 short chain dehydrogenase compare
Atu3162 -0.7 -4.3 LacI family transcriptional regulator compare
Atu3712 -0.7 -1.0 hypothetical protein compare
Atu5443 -0.7 -3.2 TetR family transcriptional regulator compare
Atu4618 -0.7 -5.2 dTDP-rhamnose-3,5-epimerase compare
Atu0912 -0.7 -0.9 Na+/H+ antiporter compare
Atu2585 -0.7 -2.8 hypothetical protein compare
Atu1687 -0.7 -4.1 anthranilate phosphoribosyltransferase compare
Atu0205 -0.7 -4.8 methylmalonate-semialdehyde dehydrogenase compare
Atu3885 -0.7 -3.5 inositol monophosphatase compare
Atu0894 -0.7 -1.5 ABC transporter, membrane spanning protein compare
Atu4614 -0.7 -4.2 glycosyltransferase compare
Atu0976 -0.7 -2.0 cycL protein compare
Atu4391 -0.7 -1.2 nitric oxide reductase NorE protein compare
Atu2684 -0.7 -1.2 hypothetical protein compare
Atu4617 -0.7 -4.6 dTDP-D-glucose-4,6-dehydratase compare
Atu1705 -0.7 -2.2 SEC-independent protein translocase protein compare
Atu3755 -0.7 -2.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1141 -0.7 -1.6 Phosphoribosylglycinamide synthetase compare
Atu2832 -0.7 -1.9 tRNA modification GTPase compare
Atu3017 -0.7 -1.3 phosphoglyceromutase compare
Atu1739 -0.7 -2.5 permease compare
Atu2824 -0.7 -2.2 hypothetical protein compare
Atu1645 -0.7 -3.9 ABC transporter, substrate binding protein compare
Atu0099 -0.7 -3.1 prephenate dehydratase compare
Atu4615 -0.7 -4.1 glucose-1-phosphate thymidylyltransferase compare
Atu1339 -0.7 -1.7 ribonuclease E compare
Atu0432 -0.7 -3.8 O-succinylhomoserine sulfhydrylase compare
Atu0677 -0.7 -1.8 hypothetical protein compare
Atu2433 -0.6 -1.0 hypothetical protein compare
Atu2442 -0.6 -2.0 hypothetical protein compare
Atu2831 -0.6 -2.0 glucose inhibited division protein A compare
Atu1646 -0.6 -2.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu1845 -0.6 -2.2 phosphoribosylformylglycinamidine synthase I compare
Atu4148 -0.6 -2.9 UDP-glucuronic acid epimerase compare
Atu1225 -0.6 -1.0 hypothetical protein compare
Atu0361 -0.6 -1.8 transcriptional regulator compare
Atu3248 -0.6 -3.9 cell division inhibitor compare
Atu3491 -0.6 -1.0 hypothetical protein compare
Atu3476 -0.6 -2.1 AsnC family transcriptional regulator compare
Atu1513 -0.6 -2.8 ABC excinuclease subunit A compare
Atu3744 -0.6 -4.0 ABC transporter permease compare
Atu1530 -0.6 -3.7 nitrogen fixation protein FixG compare
Atu1529 -0.6 -2.8 nitrogen fixation protein FixH compare
Atu2289 -0.6 -4.7 anthranilate synthase component I and II compare
Atu0538 -0.6 -1.4 hypothetical protein compare
Atu3915 -0.6 -2.2 MerR family transcriptional regulator compare
Atu5075 -0.6 -3.4 GntR family transcriptional regulator compare
Atu1647 -0.6 -3.6 ABC transporter, membrane spanning protein compare
Atu3815 -0.6 -3.2 GntR family transcriptional regulator compare
Atu2582 -0.6 -3.4 UDP-glucose/GDP-mannose dehydrogenase compare
Atu3663 -0.6 -0.9 hypothetical protein compare
Atu1993 -0.6 -2.6 tRNA/rRNA metyltransferase compare
Atu0269 -0.6 -2.1 exodeoxyribonuclease VII large subunit compare
Atu3963 -0.6 -2.6 GntR family transcriptional regulator compare
Atu0923 -0.6 -2.3 hypothetical protein compare
Atu4055 -0.6 -2.7 endo-1,3-1,4-beta-glycanase compare
Atu1983 -0.6 -3.0 hypothetical protein compare
Atu1099 -0.6 -2.6 hypothetical protein compare
Atu3032 -0.6 -3.2 hypothetical protein compare
Atu0368 -0.6 -2.8 tRNA pseudouridine synthase I compare
Atu2382 -0.6 -1.3 hypothetical protein compare
Atu2709 -0.6 -4.2 3-isopropylmalate dehydratase, large subunit compare
Atu2555 -0.6 -1.5 L-lysine 2,3-aminomutase compare
Atu1449 -0.6 -2.2 potassium uptake protein compare
Atu3689 -0.5 -4.5 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1077 -0.5 -1.7 DNA repair protein compare
Atu0577 -0.5 -2.2 FLAF protein compare
Atu4613 -0.5 -4.2 glycosyltransferase compare
Atu0346 -0.5 -1.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1874 -0.5 -1.3 RecA protein compare
Atu2590 -0.5 -3.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms