Experiment set12IT037 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu3707 -4.2 -5.3 phosphoserine aminotransferase compare
Atu2125 -3.9 -3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2036 -3.9 -14.9 acetolactate synthase III, large subunit compare
Atu0041 -3.5 -3.9 glutamine amidotransferase compare
Atu2040 -3.4 -7.9 phosphoserine phosphatase compare
Atu1030 -2.8 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0769 -2.7 -2.5 protoheme IX farnesyltransferase compare
Atu0399 -2.6 -7.2 dihydroorotase compare
Atu1588 -2.5 -8.7 homoserine dehydrogenase compare
Atu4616 -2.5 -3.1 dTDP-4-dehydrorhamnose reductase compare
Atu0031 -2.5 -2.1 PTS system, IIA component compare
Atu3763 -2.3 -2.2 hypothetical protein compare
Atu0486 -2.3 -6.3 dihydroorotate dehydrogenase compare
Atu6098 -2.3 -1.7 transcriptional regulator, HTH family compare
Atu0894 -2.2 -3.9 ABC transporter, membrane spanning protein compare
Atu1845 -2.2 -6.9 phosphoribosylformylglycinamidine synthase I compare
Atu0043 -2.2 -4.6 imidazoleglycerol-phosphate dehydratase compare
Atu0678 -2.2 -7.6 histidyl-tRNA synthetase compare
Atu3908 -2.1 -10.7 GntR family transcriptional regulator compare
Atu0679 -2.1 -6.9 ATP phosphoribosyltransferase compare
Atu1417 -2.1 -7.9 enoyl-CoA hydratase compare
Atu3706 -2.0 -7.3 D-3-phosphoglycerate dehydrogenase compare
Atu1308 -2.0 -7.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0298 -2.0 -6.6 orotidine 5 compare
Atu0026 -1.9 -1.6 hypothetical protein compare
Atu1750 -1.9 -7.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu4317 -1.8 -4.3 TetR family transcriptional regulator compare
Atu1359 -1.8 -1.5 dnaK deletion suppressor protein compare
Atu0537 -1.8 -5.2 histidinol dehydrogenase compare
Atu0400 -1.7 -5.2 orotate phosphoribosyltransferase compare
Atu1307 -1.7 -4.8 dihydroorotase compare
Atu0017 -1.7 -3.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0971 -1.7 -4.2 two component sensor kinase compare
Atu1129 -1.7 -9.4 excinuclease ABC chain C compare
Atu0142 -1.7 -2.1 cytochrome o ubiquinol oxidase subunit II compare
Atu3468 -1.6 -1.2 hypothetical protein compare
Atu1205 -1.6 -9.1 threonine dehydratase compare
Atu3755 -1.6 -4.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1513 -1.6 -6.8 ABC excinuclease subunit A compare
Atu0038 -1.5 -4.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4773 -1.5 -2.1 two component response regulator compare
Atu0029 -1.5 -5.4 S-adenosylhomocysteine hydrolase compare
Atu0647 -1.4 -6.5 phosphoribosylamine--glycine ligase compare
Atu2790 -1.4 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu2718 -1.3 -5.2 homoserine O-succinyltransferase compare
Atu2787 -1.3 -1.3 hypothetical protein compare
Atu0099 -1.3 -6.5 prephenate dehydratase compare
Atu3739 -1.3 -3.2 phosphoglycerate kinase compare
Atu0030 -1.3 -1.8 phosphocarrier protein HPr compare
Atu1140 -1.3 -4.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2728 -1.3 -3.4 beta (1-->2) glucan export ATP-binding protein compare
Atu3754 -1.3 -5.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1141 -1.3 -4.9 Phosphoribosylglycinamide synthetase compare
Atu0434 -1.3 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4613 -1.2 -8.3 glycosyltransferase compare
Atu3730 -1.2 -1.0 hypothetical protein compare
Atu1647 -1.2 -5.8 ABC transporter, membrane spanning protein compare
Atu0795 -1.2 -3.0 hypothetical protein compare
Atu0784 -1.2 -3.7 hypothetical protein compare
Atu0039 -1.2 -1.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu1810 -1.2 -1.3 hypothetical protein compare
Atu1075 -1.2 -5.9 amidophosphoribosyltransferase compare
Atu1468 -1.2 -5.3 hypothetical protein compare
Atu4618 -1.2 -6.4 dTDP-rhamnose-3,5-epimerase compare
Atu2183 -1.2 -5.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3353 -1.1 -6.3 mannose-1-phosphate guanylyltransferase compare
Atu1364 -1.1 -3.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3885 -1.1 -7.4 inositol monophosphatase compare
Atu1644 -1.1 -2.7 hypothetical protein compare
Atu1447 -1.1 -2.6 two component sensor kinase compare
Atu1688 -1.1 -4.2 indole-3-glycerol-phosphate synthase compare
Atu4614 -1.1 -5.8 glycosyltransferase compare
Atu4166 -1.1 -2.2 UDP-glucose 4-epimerase compare
Atu2073 -1.1 -4.8 membrane protein compare
Atu2640 -1.1 -4.4 hypothetical protein compare
Atu4897 -1.1 -1.3 hypothetical protein compare
Atu1354 -1.1 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0432 -1.1 -6.4 O-succinylhomoserine sulfhydrylase compare
Atu4615 -1.1 -7.0 glucose-1-phosphate thymidylyltransferase compare
Atu2554 -1.1 -2.3 lysyl-tRNA synthetase compare
Atu4617 -1.0 -5.8 dTDP-D-glucose-4,6-dehydratase compare
Atu1645 -1.0 -5.9 ABC transporter, substrate binding protein compare
Atu2207 -1.0 -2.6 two component sensor kinase compare
Atu3469 -1.0 -2.6 phosphoglyceromutase compare
Atu2052 -1.0 -4.2 hypothetical protein compare
Atu0050 -1.0 -3.0 two component response regulator compare
Atu2791 -1.0 -4.9 3-isopropylmalate dehydrogenase compare
Atu2289 -1.0 -7.8 anthranilate synthase component I and II compare
Atu3311 -1.0 -7.4 phosphomannose isomerase compare
Atu0141 -1.0 -1.0 cytochrome O ubiquinol oxidase subunit I compare
Atu1028 -1.0 -2.2 hypothetical protein compare
Atu0419 -1.0 -1.8 two component sensor kinase compare
Atu0544 -1.0 -2.2 hypothetical protein compare
Atu0086 -1.0 -1.5 ribosome-binding factor A compare
Atu2684 -1.0 -1.9 hypothetical protein compare
Atu0101 -1.0 -3.7 cytochrome c compare
Atu1076 -1.0 -3.1 colicin V production protein compare
Atu0361 -1.0 -2.4 transcriptional regulator compare
Atu0040 -0.9 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0189 -0.9 -2.3 ABC transporter, membrane spanning protein (peptide) compare
Atu3121 -0.9 -1.5 cold shock protein compare
Atu0895 -0.9 -2.6 ABC transporter, substrate binding protein compare
Atu0051 -0.9 -4.4 two component sensor kinase compare
Atu1327 -0.9 -2.4 NADH-ubiquinone oxidoreductase compare
Atu1535 -0.9 -2.3 cytochrome c oxidase, FixQ chain compare
Atu1902 -0.9 -4.2 transketolase compare
Atu0977 -0.9 -3.1 serine protease DO-like protease compare
Atu0331 -0.9 -1.5 sigma-54 modulation protein compare
Atu3727 -0.9 -2.6 hypothetical protein compare
Atu1850 -0.9 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1705 -0.9 -2.3 SEC-independent protein translocase protein compare
Atu4711 -0.9 -3.9 two component sensor kinase compare
Atu0976 -0.9 -3.1 cycL protein compare
Atu2028 -0.9 -2.7 transcriptional regulator, ArsR family compare
Atu2831 -0.9 -3.9 glucose inhibited division protein A compare
Atu1534 -0.9 -4.4 cytochrome-c oxidase, FixP chain compare
Atu2001 -0.9 -4.6 excinuclease ABC subunit B compare
Atu1173 -0.9 -5.3 MFS permease compare
Atu1619 -0.9 -1.7 protein-export membrane protein SECG compare
Atu1602 -0.9 -4.1 transcriptional activator, Crp family compare
Atu2239 -0.9 -3.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu5125 -0.8 -3.8 GntR family transcriptional regulator compare
Atu2264 -0.8 -5.4 2-isopropylmalate synthase compare
Atu1537 -0.8 -5.5 cytochrome-c oxidase, FixN chain compare
Atu1687 -0.8 -4.6 anthranilate phosphoribosyltransferase compare
Atu1077 -0.8 -2.3 DNA repair protein compare
Atu0205 -0.8 -5.3 methylmalonate-semialdehyde dehydrogenase compare
Atu2379 -0.8 -4.9 phosphomannomutase compare
Atu1677 -0.8 -3.6 queuine tRNA-ribosyltransferase compare
Atu2067 -0.8 -0.9 hypothetical protein compare
Atu1528 -0.8 -6.0 nitrogen fixation protein FixI compare
Atu0184 -0.8 -2.0 glucokinase compare
Atu2522 -0.8 -5.5 agrobacterium chromosomal virulence protein B compare
Atu0153 -0.8 -4.3 transcriptional regulator, Fur family compare
Atu1495 -0.8 -2.2 hypothetical protein compare
Atu4610 -0.8 -4.2 sugar nucleotide epimerase/dehydratase compare
Atu0846 -0.8 -3.4 transcriptional regulator, MarR family compare
Atu1646 -0.8 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu2709 -0.8 -6.0 3-isopropylmalate dehydratase, large subunit compare
Atu0703 -0.8 -1.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0540 -0.8 -1.5 hypothetical protein compare
Atu1163 -0.8 -0.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1530 -0.8 -4.9 nitrogen fixation protein FixG compare
Atu2237 -0.7 -2.6 cytochrome c1 compare
Atu2592 -0.7 -4.2 hypothetical protein compare
Atu8167 -0.7 -4.7 putative transmembrane protein compare
Atu3963 -0.7 -4.5 GntR family transcriptional regulator compare
Atu3912 -0.7 -3.9 hypothetical protein compare
Atu1589 -0.7 -2.8 aminotransferase, class I compare
Atu0025 -0.7 -0.9 hypothetical protein compare
Atu1467 -0.7 -2.0 hypothetical protein compare
Atu1446 -0.7 -1.5 two component response regulator compare
Atu1074 -0.7 -3.8 NAD/NADP dependent oxidoreductase compare
Atu1844 -0.7 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu4346 -0.7 -3.1 hypothetical protein compare
Atu2238 -0.7 -4.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1182 -0.7 -1.1 hypothetical protein compare
Atu1475 -0.7 -1.1 hypothetical protein compare
Atu1527 -0.7 -3.3 nitrogen fixation protein FixS compare
Atu4792 -0.7 -1.4 hypothetical protein compare
Atu0762 -0.7 -2.3 hypothetical protein compare
Atu0185 -0.7 -1.9 methylglyoxal synthase compare
Atu3744 -0.7 -4.1 ABC transporter permease compare
Atu1291 -0.6 -1.8 hypothetical protein compare
Atu2615 -0.6 -3.7 hypothetical protein compare
Atu6021 -0.6 -5.3 D-nopaline dehydrogenase compare
Atu0368 -0.6 -3.1 tRNA pseudouridine synthase I compare
Atu2584 -0.6 -3.2 hypothetical protein compare
Atu1774 -0.6 -3.0 ABC transporter, substrate binding protein (peptide) compare
Atu3009 -0.6 -0.8 exopolysaccharide production protein compare
Atu0876 -0.6 -1.0 superoxide dismutase compare
Atu1838 -0.6 -1.8 ABC transporter, substrate binding protein (amino acid) compare
Atu2083 -0.6 -1.4 DNA repair protein RecN compare
Atu0723 -0.6 -1.1 FAD dependent oxidoreductase compare
Atu0319 -0.6 -0.9 ubiquinone biosynthesis protein compare
Atu2591 -0.6 -4.2 glucosyltransferase compare
Atu2585 -0.6 -2.8 hypothetical protein compare
Atu5115 -0.6 -1.0 hypothetical protein compare
Atu4217 -0.6 -0.8 TetR family transcriptional regulator compare
Atu2617 -0.6 -1.7 chemotaxis protein compare
Atu6019 -0.6 -4.8 D-nopaline dehydrogenase compare
Atu6131 -0.6 -3.0 TraR Antiactivator compare
Atu5468 -0.6 -1.4 hypothetical protein compare
Atu2464 -0.6 -1.3 formyltetrahydrofolate deformylase compare
Atu4888 -0.6 -2.4 hypothetical protein compare
Atu0815 -0.6 -1.2 hypothetical protein compare
Atu2113 -0.6 -1.8 N-acetylmuramoyl-L-alanine amidase compare
Atu4882 -0.6 -1.3 hypothetical protein compare
Atu4890 -0.6 -1.1 IS426 transposase compare
Atu2439 -0.6 -0.7 hypothetical protein compare
Atu2433 -0.6 -0.9 hypothetical protein compare
Atu1258 -0.6 -2.4 ATP-dependent Clp protease, proteolytic subunit compare
Atu8118 -0.6 -2.8 putative universal stress protein compare
Atu4873 -0.6 -2.7 TetR family transcriptional regulator compare
Atu3496 -0.6 -1.6 hypothetical protein compare
Atu3021 -0.6 -3.7 sugar ABC transporter ATPase compare
Atu0062 -0.6 -3.2 transcriptional regulator, ROK family compare
Atu8117 -0.6 -2.0 hypothetical protein compare
Atu2832 -0.6 -2.4 tRNA modification GTPase compare
Atu2809 -0.6 -3.4 cobalamin biosynthesis protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms