Experiment set12IT036 for Pseudomonas putida KT2440

Compare to:

Beta-alanine carbon source

200 most important genes:

  gene name fitness t score description  
PP_0595 -7.8 -5.4 Transcriptional regulator, LysR family conserved
PP_3511 -7.4 -7.2 Branched-chain-amino-acid aminotransferase compare
PP_0597 -7.3 -11.2 methylmalonate-semialdehyde dehydrogenase conserved
PP_0422 -7.2 -7.0 Indole-3-glycerol phosphate synthase compare
PP_5098 -6.9 -6.8 methionine biosynthesis protein MetW compare
PP_0967 -6.8 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -6.7 -8.0 3-isopropylmalate dehydratase large subunit compare
PP_0966 -6.7 -12.0 Histidinol dehydrogenase compare
PP_4679 -6.6 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -6.6 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_0965 -6.5 -13.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2168 -6.5 -8.9 Transaldolase compare
PP_5014 -6.4 -4.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0290 -6.4 -4.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1988 -6.3 -11.3 3-isopropylmalate dehydrogenase compare
PP_0417 -6.3 -22.3 Anthranilate synthase component 1 compare
PP_1995 -6.3 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4680 -6.2 -14.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -6.1 -16.3 Ketol-acid reductoisomerase compare
PP_5271 -6.1 -9.5 DNA-binding transcriptional dual regulator, leucine-binding conserved
PP_5097 -6.0 -15.6 homoserine O-acetyltransferase compare
PP_2001 -6.0 -12.2 O-succinylhomoserine sulfhydrylase compare
PP_4116 -6.0 -13.4 isocitrate lyase compare
PP_4890 -5.8 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0787 -5.7 -5.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5185 -5.6 -6.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4723 -5.5 -11.2 Carbamoyl-phosphate synthase large chain compare
PP_0289 -5.5 -9.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0596 -5.5 -14.5 Omega-amino acid--pyruvate aminotransferase conserved
PP_5659 -5.5 -4.9 protein of unknown function compare
PP_5217 -5.3 -14.1 Polyphosphate kinase compare
PP_0421 -5.2 -8.9 Anthranilate phosphoribosyltransferase compare
PP_5015 -5.2 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0413 -5.2 -16.6 Polyamine ABC transporter, permease protein compare
PP_1088 -5.2 -10.5 Argininosuccinate synthase compare
PP_2327 -5.0 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5128 -5.0 -8.2 Dihydroxy-acid dehydratase compare
PP_5289 -4.9 -5.9 Acetylglutamate kinase compare
PP_2414 -4.9 -3.6 conserved exported protein of unknown function compare
PP_2388 -4.8 -6.0 Transporter, LysE family compare
PP_0414 -4.8 -5.9 Polyamine ABC transporter, permease protein compare
PP_3999 -4.7 -9.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4909 -4.6 -10.4 phosphoserine phosphatase compare
PP_0083 -4.6 -5.5 tryptophan synthase beta chain compare
PP_0082 -4.6 -4.5 tryptophan synthase alpha chain compare
PP_0164 -4.5 -10.4 conserved protein of unknown function compare
PP_4799 -4.4 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1079 -4.4 -7.6 Ornithine carbamoyltransferase compare
PP_0691 -4.4 -6.0 Glutamate 5-kinase compare
PP_4999 -4.3 -3.0 dihydroorotase-like protein compare
PP_1025 -4.2 -11.5 2-isopropylmalate synthase compare
PP_4724 -4.2 -6.1 Carbamoyl-phosphate synthase small chain compare
PP_0184 -4.2 -5.8 Argininosuccinate lyase compare
PP_0356 -4.2 -9.2 malate synthase G compare
PP_5085 -4.2 -7.5 malic enzyme B compare
PP_0411 -4.1 -7.7 Polyamine ABC transporter, ATP-binding protein compare
PP_0412 -3.8 -8.1 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_1231 -3.8 -5.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2371 -3.7 -9.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0410 -3.6 -5.7 DNA-binding response regulator UhpA compare
PP_0292 -3.6 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5270 -3.6 -7.1 D-amino-acid:quinone oxidoreductase (deaminating) conserved
PP_4364 -3.6 -4.0 putative Anti-sigma F factor antagonist compare
PP_2370 -3.4 -4.7 conserved protein of unknown function compare
PP_4696 -3.4 -4.7 Nitrogen regulation protein NR(I) compare
PP_0420 -3.2 -7.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0214 -3.2 -8.2 4-aminobutyrate aminotransferase compare
PP_5155 -3.2 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2868 -3.1 -6.1 Transcriptional regulator, Cro/CI family compare
PP_2214 -2.9 -5.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3484 -2.7 -6.4 Response regulator receiver protein compare
PP_0339 -2.7 -6.7 Pyruvate dehydrogenase E1 component compare
PP_2433 -2.6 -2.9 conserved protein of unknown function compare
PP_4700 -2.6 -2.5 pantothenate synthetase compare
PP_4480 -2.6 -9.2 arginine N-succinyltransferase, subunit alpha compare
PP_2402 -2.5 -3.7 putative Sensor histidine kinase compare
PP_1216 -2.5 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5095 -2.5 -2.7 pyrroline-5-carboxylate reductase compare
PP_4699 -2.4 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2087 -2.3 -2.3 CmpX protein compare
PP_4129 -2.3 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4131 -2.3 -6.4 NADH-quinone oxidoreductase subunit N compare
PP_5145 -2.3 -17.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0393 -2.2 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4828 -2.1 -1.7 Precorrin-8X methylmutase compare
PP_0989 -2.1 -4.0 glycine cleavage system H protein 1 compare
PP_2390 -2.1 -7.8 Transcriptional regulator, LysR family compare
PP_4124 -2.0 -5.0 NADH-quinone oxidoreductase subunit G compare
PP_0406 -2.0 -7.9 Nucleotidyltransferase family protein compare
PP_0735 -2.0 -2.5 molybdopterin-synthase adenylyltransferase compare
PP_2217 -1.9 -2.6 enoyl-CoA hydratase compare
PP_0001 -1.9 -2.1 probable chromosome-partitioning protein compare
PP_5045 -1.8 -3.6 tRNA sulfurtransferase compare
PP_3505 -1.8 -1.6 conserved protein of unknown function compare
PP_4121 -1.8 -4.5 NADH-quinone oxidoreductase subunit C/D compare
PP_4695 -1.8 -8.0 Sensory box histidine kinase compare
PP_1677 -1.8 -5.3 Adenosyl-cobyric acid synthase compare
PP_3409 -1.7 -3.5 putative Cobalamin biosynthesis protein cobE compare
PP_1676 -1.7 -4.1 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3662 -1.7 -5.7 conserved protein of unknown function compare
PP_5347 -1.7 -7.7 pyruvate carboxylase subunit A compare
PP_4829 -1.7 -3.2 putative precorrin-3B synthase compare
PP_0213 -1.7 -4.0 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_0949 -1.7 -5.6 putative ATP-binding protein UPF0042 compare
PP_0409 -1.7 -5.6 Sensory box histidine kinase compare
PP_2000 -1.6 -1.6 amidophosphoribosyl transferase compare
PP_4826 -1.6 -4.6 Precorrin-3B C17-methyltransferase compare
PP_4122 -1.6 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3506 -1.6 -3.6 Magnesium chelatase, subunit ChII compare
PP_4120 -1.6 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_4977 -1.6 -7.4 5,10-methylenetetrahydrofolate reductase compare
PP_1309 -1.6 -6.7 conserved exported protein of unknown function compare
PP_1984 -1.6 -5.8 Transcriptional regulator, LysR family conserved
PP_2328 -1.6 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_0988 -1.5 -8.5 glycine dehydrogenase compare
PP_4827 -1.5 -7.7 Precorrin-2 C(20)-methyltransferase compare
PP_4004 -1.5 -2.8 DNA translocase FtsK compare
PP_2375 -1.5 -8.9 cobalamin-dependent methionine synthase compare
PP_0022 -1.5 -1.7 hypothetical protein compare
PP_1675 -1.5 -5.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1198 -1.5 -2.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1681 -1.5 -6.1 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5346 -1.5 -8.2 pyruvate carboxylase subunit B compare
PP_0291 -1.5 -1.8 conserved protein of unknown function compare
PP_2820 -1.5 -1.8 HTH-type transcriptional regulator nfxB compare
PP_3637 -1.4 -1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3924 -1.4 -1.7 conserved protein of unknown function compare
PP_1783 -1.4 -1.0 dTDP-glucose pyrophosphorylase compare
PP_1673 -1.4 -4.7 cobyrinate a,c-diamide synthase compare
PP_0248 -1.4 -9.3 Probable alpha-L-glutamate ligase compare
PP_2145 -1.4 -4.3 beta-N-acetylglucosaminidase compare
PP_5104 -1.4 -5.1 thiazole synthase compare
PP_2336 -1.4 -2.9 aconitate hydratase 1 compare
PP_0948 -1.4 -2.7 Phosphocarrier protein HPr compare
PP_1217 -1.3 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4863 -1.3 -7.5 high-affinity branched-chain amino acid transporter, ATP-binding compare
PP_4824 -1.3 -4.2 Sensor histidine kinase/response regulator compare
PP_0986 -1.3 -5.0 aminomethyltransferase compare
PP_1941 -1.3 -4.3 conserved protein of unknown function compare
PP_3539 -1.3 -3.5 putative Transcriptional regulator compare
PP_4864 -1.3 -7.5 High-affinity branched-chain amino acid transport ATP-binding protein BraF compare
PP_4865 -1.3 -7.2 High-affinity branched-chain amino acid transport system permease protein BraE compare
PP_1664 -1.3 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_4830 -1.3 -5.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_1994 -1.3 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1233 -1.3 -4.8 sulfurtransferase compare
PP_0997 -1.3 -6.0 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_3507 -1.3 -7.3 Aerobic cobaltochelatase subunit CobN compare
PP_5017 -1.3 -1.4 Sec-independent protein translocase protein TatB compare
PP_1041 -1.3 -2.3 twin arginine protein export complex subunit compare
PP_5338 -1.3 -2.1 aspartate ammonia-lyase compare
PP_0435 -1.2 -7.9 Peptidase, M23/M37 family compare
PP_4866 -1.2 -7.4 High-affinity branched-chain amino acid transport system permease protein BraD conserved
PP_2215 -1.2 -4.1 acetyl-CoA acetyltransferase compare
PP_1208 -1.2 -1.8 conserved protein of unknown function, SlyX family compare
PP_2137 -1.2 -2.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_2378 -1.2 -2.1 Fe/S biogenesis protein NfuA compare
PP_5093 -1.2 -1.2 twitching motility protein compare
PP_1654 -1.2 -2.6 cysteine synthase B compare
PP_1355 -1.2 -9.3 Muropeptide permease AmpG compare
PP_1656 -1.2 -4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4892 -1.2 -4.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1764 -1.1 -4.1 Phosphoglycolate phosphatase 2 compare
PP_0405 -1.1 -8.7 conserved protein of unknown function compare
PP_1912 -1.1 -2.9 Phosphate acyltransferase compare
PP_0368 -1.1 -5.5 putative Acyl-CoA dehydrogenase compare
PP_5094 -1.1 -2.1 putative enzyme with PLP binding domain compare
PP_4130 -1.1 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4993 -1.1 -2.6 Glutathione synthetase compare
PP_5230 -1.1 -2.0 Tyrosine recombinase XerC compare
PP_0547 -1.1 -3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3810 -1.1 -2.0 conserved protein of unknown function compare
PP_2335 -1.1 -4.9 methylcitrate synthase compare
PP_4273 -1.1 -1.8 Transcriptional regulator, MerR family compare
PP_3392 -1.1 -1.3 conserved protein of unknown function compare
PP_0063 -1.1 -1.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0086 -1.1 -1.2 conserved protein of unknown function compare
PP_2090 -1.1 -2.3 Uroporphyrinogen-III C-methyltransferase compare
PP_2152 -1.0 -2.0 glycerophosphoryl diester phosphodiesterase compare
PP_4943 -1.0 -1.4 putative Glycosyl transferase compare
PP_4937 -1.0 -2.7 toluene tolerance protein compare
PP_1428 -1.0 -1.1 Sigma factor AlgU negative regulatory protein compare
PP_3508 -1.0 -1.6 Protein CobW compare
PP_4808 -1.0 -2.1 23S rRNA m3psi1915 methyltransferase compare
PP_4891 -1.0 -3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4126 -1.0 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_2403 -1.0 -1.9 Chemotaxis protein CheY compare
PP_0833 -1.0 -1.1 queuine tRNA-ribosyltransferase compare
PP_1655 -1.0 -4.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3248 -1.0 -1.6 Dyp-type peroxidase family protein compare
PP_4787 -1.0 -1.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_3522 -1.0 -3.2 conserved protein of unknown function compare
PP_4814 -1.0 -1.7 ATP-dependent protease La domain protein compare
PP_5310 -1.0 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_5146 -0.9 -3.8 RNA pyrophosphohydrolase compare
PP_4701 -0.9 -1.1 glucose-6-phosphate isomerase compare
PP_4669 -0.9 -2.5 OmpA family protein compare
PP_1734 -0.9 -1.8 Probable septum site-determining protein MinC compare
PP_1906 -0.9 -2.3 ribosomal large subunit pseudouridine synthase C compare


Specific Phenotypes

For 20 genes in this experiment

For carbon source Beta-alanine in Pseudomonas putida KT2440

For carbon source Beta-alanine across organisms