Experiment set12IT032 for Herbaspirillum seropedicae SmR1

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most important genes:

  gene name fitness t score description  
HSERO_RS15630 -3.6 -1.5 exodeoxyribonuclease III compare
HSERO_RS16470 -3.0 -3.8 tryptophan synthase subunit alpha compare
HSERO_RS16480 -2.6 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS10460 -2.6 -1.5 homoserine dehydrogenase compare
HSERO_RS16070 -2.4 -2.0 cytochrome biogenesis protein compare
HSERO_RS21475 -2.3 -2.7 recombinase XerC compare
HSERO_RS17110 -2.3 -2.0 ribonuclease H compare
HSERO_RS16035 -2.2 -3.0 cytochrome C oxidase compare
HSERO_RS23435 -2.2 -2.9 MerR family transcriptional regulator compare
HSERO_RS19450 -1.9 -3.4 indole-3-glycerol-phosphate synthase compare
HSERO_RS17815 -1.9 -1.3 glycosyl transferase compare
HSERO_RS21480 -1.6 -1.4 transcriptional regulator compare
HSERO_RS18010 -1.6 -0.8 pseudouridine synthase compare
HSERO_RS20920 -1.5 -6.6 3-dehydroquinate synthase compare
HSERO_RS08115 -1.5 -1.4 acyl-CoA-binding protein compare
HSERO_RS16065 -1.5 -3.7 cation transporter compare
HSERO_RS02340 -1.5 -11.5 dihydroorotase compare
HSERO_RS19595 -1.4 -7.8 glutamate synthase compare
HSERO_RS07160 -1.3 -6.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS05515 -1.3 -0.5 glucose-6-phosphate isomerase compare
HSERO_RS02215 -1.3 -0.5 D-arabinitol 4-dehydrogenase compare
HSERO_RS09775 -1.3 -1.8 cobalamin synthase compare
HSERO_RS15055 -1.3 -2.9 membrane protein compare
HSERO_RS24015 -1.3 -4.4 (2Fe-2S)-binding protein compare
HSERO_RS23185 -1.3 -1.0 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS16475 -1.2 -1.2 tryptophan synthase subunit alpha compare
HSERO_RS15665 -1.2 -1.0 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS02325 -1.2 -6.3 uracil phosphoribosyltransferase compare
HSERO_RS02330 -1.2 -5.5 aspartate carbamoyltransferase compare
HSERO_RS15575 -1.2 -1.2 uroporphyrin-III C-methyltransferase compare
HSERO_RS02780 -1.2 -1.7 hypothetical protein compare
HSERO_RS03520 -1.2 -2.2 aminoglycoside phosphotransferase compare
HSERO_RS19445 -1.1 -5.3 anthranilate phosphoribosyltransferase compare
HSERO_RS05910 -1.1 -1.9 phosphoribosylglycinamide formyltransferase compare
HSERO_RS01935 -1.1 -2.3 3-dehydroquinate dehydratase compare
HSERO_RS09235 -1.1 -1.7 MarR family transcriptional regulator compare
HSERO_RS16825 -1.1 -1.3 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS02650 -1.1 -4.9 dihydroxy-acid dehydratase compare
HSERO_RS00965 -1.0 -0.9 trehalose-phosphatase compare
HSERO_RS22040 -1.0 -2.2 CDP-glucose 4,6-dehydratase compare
HSERO_RS19525 -1.0 -2.8 PTS sugar transporter subunit IIA compare
HSERO_RS19090 -1.0 -1.6 C4-dicarboxylate ABC transporter compare
HSERO_RS17810 -1.0 -0.4 glycosyl transferase compare
HSERO_RS20985 -1.0 -1.0 serine acetyltransferase compare
HSERO_RS00410 -1.0 -1.8 phosphoheptose isomerase compare
HSERO_RS18990 -1.0 -3.1 pyrroline-5-carboxylate reductase compare
HSERO_RS04325 -1.0 -3.5 helicase I compare
HSERO_RS16040 -1.0 -2.2 cytochrome CBB3 compare
HSERO_RS19435 -1.0 -4.1 anthranilate synthase subunit I compare
HSERO_RS07970 -1.0 -1.4 formyltetrahydrofolate deformylase compare
HSERO_RS12920 -1.0 -0.9 trigger factor compare
HSERO_RS17980 -1.0 -1.8 GTP-binding protein compare
HSERO_RS07470 -0.9 -1.2 ketosteroid isomerase compare
HSERO_RS08660 -0.9 -3.1 ketol-acid reductoisomerase compare
HSERO_RS01455 -0.9 -1.1 hypothetical protein compare
HSERO_RS01825 -0.9 -2.4 RNA pyrophosphohydrolase compare
HSERO_RS16275 -0.9 -1.2 5-hydroxyisourate hydrolase compare
HSERO_RS00795 -0.9 -2.8 glycerol-3-phosphate dehydrogenase compare
HSERO_RS21035 -0.9 -1.7 hypothetical protein compare
HSERO_RS22285 -0.9 -1.7 GntR family transcriptional regulator compare
HSERO_RS23945 -0.8 -1.6 cobyric acid synthase CobQ compare
HSERO_RS09455 -0.8 -2.3 NAD synthetase compare
HSERO_RS13285 -0.8 -1.3 precorrin-2 C20-methyltransferase compare
HSERO_RS21230 -0.8 -2.0 GntR family transcriptional regulator compare
HSERO_RS14320 -0.8 -1.2 FmdB family transcriptional regulator compare
HSERO_RS13960 -0.8 -2.3 hypothetical protein compare
HSERO_RS08440 -0.8 -2.2 hypothetical protein compare
HSERO_RS23655 -0.8 -1.4 phosphonate ABC transporter permease compare
HSERO_RS23765 -0.8 -2.3 hypothetical protein compare
HSERO_RS05505 -0.8 -1.7 transcriptional regulator compare
HSERO_RS00080 -0.8 -4.4 histidine kinase compare
HSERO_RS20825 -0.8 -1.7 ABC transporter permease compare
HSERO_RS09650 -0.8 -1.6 elongation factor 4 compare
HSERO_RS16485 -0.8 -3.5 tRNA pseudouridine synthase A compare
HSERO_RS09780 -0.8 -1.4 phosphoglycerate mutase compare
HSERO_RS07275 -0.8 -1.8 D-amino acid dehydrogenase compare
HSERO_RS00430 -0.8 -1.3 glutamate--cysteine ligase compare
HSERO_RS08650 -0.8 -4.7 acetolactate synthase compare
HSERO_RS09405 -0.8 -2.9 molybdenum cofactor biosynthesis protein MoeA compare
HSERO_RS07600 -0.8 -1.8 threonine-phosphate decarboxylase compare
HSERO_RS11010 -0.7 -2.1 RnfH compare
HSERO_RS18995 -0.7 -1.8 hypothetical protein compare
HSERO_RS21040 -0.7 -2.5 3-oxoacyl-ACP synthase compare
HSERO_RS11880 -0.7 -2.0 hypothetical protein compare
HSERO_RS01245 -0.7 -0.9 hypothetical protein compare
HSERO_RS05970 -0.7 -1.2 ABC transporter compare
HSERO_RS21945 -0.7 -1.4 hypothetical protein compare
HSERO_RS09925 -0.7 -1.5 hypothetical protein compare
HSERO_RS07025 -0.7 -1.5 ATP-dependent Clp protease ClpS compare
HSERO_RS13260 -0.7 -1.4 cobinamide adenolsyltransferase compare
HSERO_RS19185 -0.7 -2.5 phosphomethylpyrimidine kinase compare
HSERO_RS18875 -0.7 -0.9 ATPase compare
HSERO_RS05680 -0.7 -2.2 DNA-directed RNA polymerase subunit alpha compare
HSERO_RS04330 -0.7 -3.3 ATP-dependent exonuclease compare
HSERO_RS21960 -0.7 -2.5 glutamine amidotransferase compare
HSERO_RS23830 -0.7 -2.1 transcriptional regulator compare
HSERO_RS12995 -0.7 -1.2 DNAase compare
HSERO_RS10670 -0.7 -2.4 signal transduction protein compare
HSERO_RS13270 -0.7 -2.3 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS09910 -0.7 -1.3 integration host factor subunit alpha compare
HSERO_RS03550 -0.7 -1.2 glyoxalase I compare
HSERO_RS19750 -0.7 -1.9 hypothetical protein compare
HSERO_RS08655 -0.6 -1.4 acetolactate synthase compare
HSERO_RS23740 -0.6 -2.7 blue-light sensor BLUF compare
HSERO_RS07385 -0.6 -1.0 hypothetical protein compare
HSERO_RS13480 -0.6 -1.5 C4-dicarboxylate ABC transporter compare
HSERO_RS23715 -0.6 -4.9 hypothetical protein compare
HSERO_RS21005 -0.6 -3.1 asparagine synthase compare
HSERO_RS10750 -0.6 -1.1 hypothetical protein compare
HSERO_RS18675 -0.6 -1.1 hypothetical protein compare
HSERO_RS01105 -0.6 -1.3 hypothetical protein compare
HSERO_RS01815 -0.6 -2.6 gamma-glutamyl kinase compare
HSERO_RS20125 -0.6 -2.1 hypothetical protein compare
HSERO_RS10070 -0.6 -1.5 hypothetical protein compare
HSERO_RS20265 -0.6 -1.1 hypothetical protein compare
HSERO_RS15600 -0.6 -3.0 cytosol aminopeptidase compare
HSERO_RS08725 -0.6 -1.8 transcriptional regulator compare
HSERO_RS15780 -0.6 -2.0 GntR family transcriptional regulator compare
HSERO_RS16620 -0.6 -3.2 hypothetical protein compare
HSERO_RS16055 -0.6 -2.2 cytochrome oxidase subunit I compare
HSERO_RS23455 -0.6 -1.0 methylcrotonoyl-CoA carboxylase compare
HSERO_RS13300 -0.6 -1.6 cobalt-precorrin-6Y C(5)-methyltransferase compare
HSERO_RS06960 -0.6 -1.3 chemotaxis protein CheY compare
HSERO_RS12560 -0.6 -1.9 antitoxin compare
HSERO_RS13255 -0.6 -1.4 cobyrinic acid a,c-diamide synthase compare
HSERO_RS09935 -0.6 -3.2 UDP-phosphate glucose phosphotransferase compare
HSERO_RS10350 -0.6 -1.5 flagellin compare
HSERO_RS13490 -0.6 -1.0 pseudouridine synthase compare
HSERO_RS21000 -0.6 -1.6 aminotransferase DegT compare
HSERO_RS19800 -0.6 -2.0 membrane protein compare
HSERO_RS00810 -0.6 -1.2 glutaredoxin compare
HSERO_RS13310 -0.6 -3.1 cobaltochelatase compare
HSERO_RS01505 -0.6 -1.6 transketolase compare
HSERO_RS07800 -0.6 -1.9 transcriptional regulator compare
HSERO_RS13280 -0.6 -1.4 precorrin-4 C11-methyltransferase compare
HSERO_RS18175 -0.6 -1.8 nitrate reductase compare
HSERO_RS09635 -0.5 -1.6 transcriptional regulator compare
HSERO_RS17530 -0.5 -1.7 RpiR family transcriptional regulator compare
HSERO_RS22730 -0.5 -2.6 sugar ABC transporter substrate-binding protein compare
HSERO_RS18515 -0.5 -1.7 membrane protein compare
HSERO_RS05815 -0.5 -2.1 osmotically inducible protein C compare
HSERO_RS18895 -0.5 -2.0 alkane 1-monooxygenase compare
HSERO_RS14365 -0.5 -1.4 nitrogen fixation protein NifZ compare
HSERO_RS02770 -0.5 -1.2 hypothetical protein compare
HSERO_RS08795 -0.5 -1.1 transcriptional regulator compare
HSERO_RS21585 -0.5 -1.4 hypothetical protein compare
HSERO_RS12795 -0.5 -1.9 hypothetical protein compare
HSERO_RS05195 -0.5 -2.8 xylose ABC transporter ATP-binding protein compare
HSERO_RS07625 -0.5 -1.0 tryptophanyl-tRNA synthetase compare
HSERO_RS12840 -0.5 -2.7 Crp/Fnr family transcriptional regulator compare
HSERO_RS03325 -0.5 -1.5 hypothetical protein compare
HSERO_RS05040 -0.5 -0.5 (2Fe-2S)-binding protein compare
HSERO_RS20855 -0.5 -2.1 ferritin compare
HSERO_RS21420 -0.5 -2.7 5-formyltetrahydrofolate cyclo-ligase compare
HSERO_RS13305 -0.5 -2.4 magnesium chelatase compare
HSERO_RS01510 -0.5 -2.5 membrane protein compare
HSERO_RS21445 -0.5 -0.5 lipid A biosynthesis acyltransferase compare
HSERO_RS18770 -0.5 -1.8 transcriptional regulator compare
HSERO_RS10455 -0.5 -2.3 aminotransferase compare
HSERO_RS02015 -0.5 -1.7 peptidase M23 compare
HSERO_RS14765 -0.5 -2.0 membrane protein compare
HSERO_RS16045 -0.5 -1.1 cytochrome oxidase compare
HSERO_RS05190 -0.5 -3.1 sugar ABC transporter substrate-binding protein compare
HSERO_RS06530 -0.5 -0.7 muconolactone delta-isomerase compare
HSERO_RS23725 -0.5 -1.9 peptidase M20 compare
HSERO_RS21375 -0.5 -0.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS21525 -0.5 -1.5 alpha/beta hydrolase compare
HSERO_RS21740 -0.5 -2.7 methionine synthase compare
HSERO_RS10400 -0.5 -3.2 inorganic phosphate transporter compare
HSERO_RS11800 -0.5 -1.8 hypothetical protein compare
HSERO_RS00835 -0.5 -0.9 molybdopterin biosynthesis protein MoeB compare
HSERO_RS12520 -0.5 -1.4 hypothetical protein compare
HSERO_RS10405 -0.5 -0.7 phosphate starvation protein PhoH compare
HSERO_RS06335 -0.5 -1.3 chemotaxis protein CheY compare
HSERO_RS17465 -0.5 -2.4 TetR family transcriptional regulator compare
HSERO_RS22350 -0.5 -0.8 urea carboxylase compare
HSERO_RS14045 -0.5 -2.0 aldolase compare
HSERO_RS10610 -0.5 -2.3 methylglyoxal synthase compare
HSERO_RS02445 -0.5 -2.0 proteinase inhibitor compare
HSERO_RS16030 -0.5 -0.6 cytochrome oxidase assembly protein compare
HSERO_RS03085 -0.5 -1.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS12470 -0.5 -1.2 chemotaxis protein CheY compare
HSERO_RS18550 -0.5 -0.9 excinuclease ATPase subunit compare
HSERO_RS06365 -0.5 -1.7 hypothetical protein compare
HSERO_RS22535 -0.5 -1.7 LuxR family transcriptional regulator compare
HSERO_RS05605 -0.5 -1.8 homogentisate 1,2-dioxygenase compare
HSERO_RS13265 -0.5 -1.4 G3E family GTPase compare
HSERO_RS18600 -0.5 -0.8 transcriptional regulator compare
HSERO_RS23610 -0.5 -0.8 urease subunit gamma compare
HSERO_RS14935 -0.5 -1.9 hypothetical protein compare
HSERO_RS09745 -0.5 -0.9 chemotaxis protein CheY compare
HSERO_RS13650 -0.5 -2.3 high-affinity Fe2+/Pb2+ permease compare
HSERO_RS01870 -0.5 -2.2 ABC transporter permease compare
HSERO_RS04410 -0.5 -1.8 hypothetical protein compare
HSERO_RS00060 -0.5 -1.8 hypothetical protein compare
HSERO_RS03825 -0.5 -1.6 hypothetical protein compare
HSERO_RS10945 -0.5 -0.9 ribonuclease HII compare
HSERO_RS02925 -0.5 -2.6 3-oxoacyl-ACP reductase compare
HSERO_RS03310 -0.5 -1.8 hypothetical protein compare
HSERO_RS02765 -0.5 -0.8 general stress protein compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms