Experiment set12IT031 for Pseudomonas putida KT2440

Compare to:

Vanillin carbon source

200 most important genes:

  gene name fitness t score description  
PP_3952 -8.2 -5.7 3-oxoadipate CoA-transferase subunit A compare
PP_4364 -8.1 -5.6 putative Anti-sigma F factor antagonist compare
PP_4656 -8.0 -5.5 protocatechuate 3,4-dioxygenase beta chain compare
PP_1988 -7.9 -5.5 3-isopropylmalate dehydrogenase compare
PP_0422 -7.9 -5.5 Indole-3-glycerol phosphate synthase compare
PP_0787 -7.6 -5.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0966 -7.5 -7.3 Histidinol dehydrogenase compare
PP_1379 -7.5 -5.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_1377 -7.5 -7.3 beta-ketoadipyl-CoA thiolase compare
PP_0967 -7.3 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1985 -7.2 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_3736 -7.2 -9.9 vanillate O-demethylase oxygenase subunit compare
PP_1380 -7.1 -6.9 3-oxoadipate enol-lactonase 2 compare
PP_5097 -6.9 -13.2 homoserine O-acetyltransferase compare
PP_4680 -6.8 -13.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2001 -6.8 -11.3 O-succinylhomoserine sulfhydrylase compare
PP_4678 -6.7 -15.6 Ketol-acid reductoisomerase compare
PP_4679 -6.7 -6.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0164 -6.7 -4.6 conserved protein of unknown function compare
PP_5098 -6.6 -9.1 methionine biosynthesis protein MetW compare
PP_2371 -6.5 -7.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -6.5 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0290 -6.5 -4.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4655 -6.4 -12.9 protocatechuate 3,4-dioxygenase alpha chain compare
PP_5289 -6.4 -4.4 Acetylglutamate kinase compare
PP_4724 -6.4 -4.4 Carbamoyl-phosphate synthase small chain compare
PP_3951 -6.4 -7.6 3-oxoadipate CoA-transferase subunit A compare
PP_1995 -6.3 -6.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1375 -6.2 -15.1 transcription regulatory protein (pca regulon) compare
PP_1231 -6.2 -7.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3511 -6.2 -11.1 Branched-chain-amino-acid aminotransferase compare
PP_0417 -6.1 -21.7 Anthranilate synthase component 1 compare
PP_4723 -6.1 -7.2 Carbamoyl-phosphate synthase large chain compare
PP_3737 -6.0 -11.5 vanillate O-demethylase oxidoreductase compare
PP_4909 -5.9 -9.9 phosphoserine phosphatase compare
PP_1088 -5.9 -7.0 Argininosuccinate synthase compare
PP_0293 -5.8 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5303 -5.8 -7.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0420 -5.7 -13.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0289 -5.6 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -5.6 -7.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0691 -5.5 -5.3 Glutamate 5-kinase compare
PP_1713 -5.4 -2.7 Transcriptional regulator PcaQ compare
PP_2327 -5.4 -6.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1381 -5.4 -1.9 4-carboxymuconolactone decarboxylase compare
PP_0965 -5.3 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5128 -5.3 -9.5 Dihydroxy-acid dehydratase compare
PP_1233 -5.2 -7.2 sulfurtransferase compare
PP_1826 -5.1 -4.5 Hydrolase, isochorismatase family compare
PP_5155 -5.1 -6.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -5.1 -8.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0421 -5.0 -8.2 Anthranilate phosphoribosyltransferase compare
PP_0082 -4.9 -3.4 tryptophan synthase alpha chain compare
PP_4890 -4.9 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_0184 -4.9 -3.4 Argininosuccinate lyase compare
PP_4122 -4.8 -3.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0083 -4.8 -5.7 tryptophan synthase beta chain compare
PP_1616 -4.6 -11.7 formaldehyde dehydrogenase, glutathione-dependent compare
PP_1986 -4.6 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_1654 -4.5 -3.1 cysteine synthase B compare
PP_5095 -4.5 -3.0 pyrroline-5-carboxylate reductase compare
PP_4799 -4.5 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4999 -4.4 -3.0 dihydroorotase-like protein compare
PP_5015 -4.3 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0339 -4.3 -4.2 Pyruvate dehydrogenase E1 component compare
PP_1079 -4.3 -5.2 Ornithine carbamoyltransferase compare
PP_2168 -4.1 -11.1 Transaldolase compare
PP_2433 -4.1 -3.6 conserved protein of unknown function compare
PP_3828 -3.9 -9.8 Molybdate-binding periplasmic protein compare
PP_2123 -3.8 -9.6 molybdenum::molybdopterin ligase compare
PP_4696 -3.8 -3.7 Nitrogen regulation protein NR(I) compare
PP_1292 -3.7 -5.9 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_0888 -3.7 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_0735 -3.6 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_0368 -3.5 -9.2 putative Acyl-CoA dehydrogenase compare
PP_2328 -3.5 -9.2 Phosphoadenosine phosphosulfate reductase compare
PP_1025 -3.4 -8.4 2-isopropylmalate synthase compare
PP_1293 -3.4 -2.3 molybdopterin synthase small subunit compare
PP_1294 -3.4 -4.9 molybdopterin synthase large subunit compare
PP_3829 -3.3 -5.0 Molybdenum transport system permease protein ModB compare
PP_3946 -3.3 -1.6 HTH-type transcriptional repressor NicR compare
PP_4993 -3.2 -2.2 Glutathione synthetase compare
PP_5104 -3.2 -6.3 thiazole synthase compare
PP_4782 -3.0 -5.5 Phosphomethylpyrimidine kinase compare
PP_4597 -2.9 -6.4 Cyclic pyranopterin monophosphate synthase compare
PP_4342 -2.9 -3.4 flagellar synthesis regulator, putative ATPase compare
PP_1733 -2.9 -2.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_4700 -2.9 -2.0 pantothenate synthetase compare
PP_2087 -2.7 -1.9 CmpX protein compare
PP_2402 -2.7 -3.5 putative Sensor histidine kinase compare
PP_4004 -2.5 -4.4 DNA translocase FtsK compare
PP_4231 -2.5 -5.5 putative Xanthine dehydrogenase accessory factor compare
PP_0292 -2.4 -1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0291 -2.4 -2.7 conserved protein of unknown function compare
PP_0393 -2.4 -2.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3621 -2.4 -5.9 vanillin dehydrogenase, iorA-like component (from data) compare
PP_3505 -2.3 -2.4 conserved protein of unknown function compare
PP_1303 -2.3 -5.2 Sulfate adenylyltransferase subunit 2 compare
PP_3622 -2.3 -12.3 vanillin dehydrogenase, iorB-like component (from data) compare
PP_2136 -2.3 -4.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1615 -2.2 -6.3 Transcriptional regulator, LysR family compare
PP_3603 -2.2 -6.2 Transcriptional regulator, GntR family compare
PP_1304 -2.2 -8.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3830 -2.2 -9.3 Molybdenum import ATP-binding protein ModC compare
PP_2356 -2.1 -9.3 putative Phytochrome family protein compare
PP_2388 -2.1 -3.1 Transporter, LysE family compare
PP_4699 -2.1 -4.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4121 -2.1 -5.4 NADH-quinone oxidoreductase subunit C/D compare
PP_5338 -2.1 -3.1 aspartate ammonia-lyase compare
PP_2414 -2.1 -1.3 conserved exported protein of unknown function compare
PP_0117 -2.1 -5.0 Zn(2+) ABC transporter - permease subunit compare
PP_1428 -2.0 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_4129 -2.0 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4131 -2.0 -6.3 NADH-quinone oxidoreductase subunit N compare
PP_3590 -2.0 -7.6 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4695 -2.0 -7.3 Sensory box histidine kinase compare
PP_5045 -2.0 -4.0 tRNA sulfurtransferase compare
PP_5217 -2.0 -11.4 Polyphosphate kinase compare
PP_4058 -2.0 -7.7 1,4-alpha-glucan branching enzyme compare
PP_5198 -1.9 -3.4 conserved protein of unknown function compare
PP_4130 -1.9 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1994 -1.8 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_3286 -1.8 -5.2 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1355 -1.8 -13.2 Muropeptide permease AmpG compare
PP_0435 -1.7 -8.4 Peptidase, M23/M37 family compare
PP_1493 -1.7 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4199 -1.7 -1.7 putative Lipoprotein compare
PP_0120 -1.7 -5.2 putative zinc ABC transporter compare
PP_0848 -1.7 -2.7 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2370 -1.7 -1.3 conserved protein of unknown function compare
PP_1677 -1.7 -4.4 Adenosyl-cobyric acid synthase compare
PP_2354 -1.7 -8.8 Sensory box histidine kinase/response regulator compare
PP_0406 -1.7 -4.4 Nucleotidyltransferase family protein compare
PP_0566 -1.7 -1.1 translation-related factor compare
PP_0434 -1.7 -11.5 Anhydro-N-acetylmuramic acid kinase compare
PP_3662 -1.6 -5.9 conserved protein of unknown function compare
PP_1198 -1.6 -3.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4120 -1.6 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_3623 -1.6 -7.9 vanillin dehydrogenase, cytochrome c component (from data) compare
PP_4268 -1.6 -1.3 nucleoid-associated broad specificity regulator compare
PP_0405 -1.6 -10.8 conserved protein of unknown function compare
PP_0621 -1.5 -3.4 conserved protein of unknown function compare
PP_4124 -1.5 -4.2 NADH-quinone oxidoreductase subunit G compare
PP_1378 -1.5 -4.3 alpha-ketoglutarate permease compare
PP_4880 -1.5 -6.9 exoribonuclease R compare
PP_1217 -1.5 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3493 -1.5 -6.1 Transcriptional regulator, LysR family compare
PP_5621 -1.4 -2.4 protein of unknown function compare
PP_4320 -1.4 -3.9 cytochrome c-type biogenesis protein compare
PP_4922 -1.4 -6.5 Phosphomethylpyrimidine synthase compare
PP_5146 -1.4 -5.2 RNA pyrophosphohydrolase compare
PP_4828 -1.4 -1.1 Precorrin-8X methylmutase compare
PP_2000 -1.4 -1.6 amidophosphoribosyl transferase compare
PP_5350 -1.4 -2.4 Transcriptional regulator, RpiR family compare
PP_0035 -1.4 -3.0 putative bactoprenol-linked glycose transferase compare
PP_0086 -1.4 -1.0 conserved protein of unknown function compare
PP_1764 -1.4 -4.7 Phosphoglycolate phosphatase 2 compare
PP_5008 -1.4 -1.1 Poly granule-associated protein compare
PP_1395 -1.4 -8.4 Transcriptional regulator, AraC family compare
PP_2145 -1.3 -4.2 beta-N-acetylglucosaminidase compare
PP_1214 -1.3 -2.7 putative transcriptional regulatory protein compare
PP_1041 -1.3 -2.0 twin arginine protein export complex subunit compare
PP_4804 -1.3 -2.9 RlpA-like lipoprotein compare
PP_2337 -1.3 -2.2 aconitate isomerase compare
PP_0988 -1.3 -7.8 glycine dehydrogenase compare
PP_5017 -1.3 -1.3 Sec-independent protein translocase protein TatB compare
PP_1783 -1.3 -0.9 dTDP-glucose pyrophosphorylase compare
PP_0879 -1.3 -5.2 dipeptide ABC transporter - putative ATP binding subunit compare
PP_1678 -1.3 -2.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0118 -1.3 -4.8 zinc import ATP-binding protein compare
PP_5604 -1.3 -1.9 putative subtilisin-like serine protease compare
PP_0846 -1.2 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_5028 -1.2 -2.1 proline iminopeptidase compare
PP_4517 -1.2 -1.5 conserved protein of unknown function compare
PP_0855 -1.2 -0.8 conserved protein of unknown function compare
PP_0962 -1.2 -2.2 toluene-tolerance protein compare
PP_1387 -1.2 -3.3 Probable HTH-type transcriptional regulator TtgR compare
PP_4515 -1.2 -4.1 Transcriptional regulator, MarR family compare
PP_2029 -1.2 -2.5 von Willebrand factor type A domain protein compare
PP_4937 -1.2 -2.4 toluene tolerance protein compare
PP_4424 -1.2 -1.9 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_0881 -1.1 -4.3 dipeptide ABC transporter - putative membrane subunit compare
PP_3494 -1.1 -3.7 conserved exported protein of unknown function compare
PP_3924 -1.1 -2.3 conserved protein of unknown function compare
PP_3105 -1.1 -1.1 conserved membrane protein of unknown function compare
PP_5352 -1.1 -5.4 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_3102 -1.1 -3.1 conserved protein of unknown function compare
PP_3409 -1.1 -1.7 putative Cobalamin biosynthesis protein cobE compare
PP_2324 -1.1 -4.0 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4622 -1.1 -3.4 Hmg transcriptional repressor compare
PP_4008 -1.1 -4.6 ATP-dependent serine protease compare
PP_2345 -1.1 -2.0 conserved exported protein of unknown function compare
PP_4561 -1.1 -0.7 stress response protein compare
PP_5227 -1.1 -4.4 diaminopimelate decarboxylase compare
PP_1716 -1.1 -3.1 Transcriptional regulator, Cro/CI family compare
PP_5027 -1.1 -2.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5035 -1.1 -3.8 Histidine utilization repressor compare
PP_0725 -1.0 -3.3 conserved hypothetical TPR repeat protein compare
PP_5203 -1.0 -4.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_1426 -1.0 -6.3 L-aspartate oxidase compare


Specific Phenotypes

For 23 genes in this experiment

For carbon source Vanillin in Pseudomonas putida KT2440

For carbon source Vanillin across organisms