Experiment set12IT030 for Pseudomonas putida KT2440

Compare to:

3-Hydroxypropionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_4561 +1.3 2.0 stress response protein compare
PP_t29 +1.3 3.1 tRNA-Ala compare
PP_2773 +1.2 3.8 conserved protein of unknown function compare
PP_5225 +1.2 2.3 frataxin compare
PP_0276 +1.1 2.3 Transcriptional regulator, Cro/CI family compare
PP_0948 +1.0 4.0 Phosphocarrier protein HPr compare
PP_0805 +0.9 7.9 Outer membrane efflux protein compare
PP_1808 +0.9 3.9 glucose-6-phosphate isomerase compare
PP_4642 +0.9 1.8 Cyclic diguanosine monophosphate-binding protein compare
PP_1663 +0.9 5.3 conserved exported protein of unknown function compare
PP_1113 +0.9 7.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0804 +0.9 5.1 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_1237 +0.9 1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5248 +0.9 1.4 putative hydrolase compare
PP_0806 +0.9 8.2 putative Surface adhesion protein compare
PP_5053 +0.8 3.6 Protein-export protein SecB compare
PP_0574 +0.8 7.0 DNA-binding response regulator, LuxR family compare
PP_5000 +0.8 1.6 peptidase component of the ATP-dependent HslVU protease compare
PP_0960 +0.8 4.9 phospholipid ABC transporter binding protein compare
PP_2900 +0.8 2.7 conserved protein of unknown function compare
PP_1503 +0.7 2.6 conserved protein of unknown function compare
PP_0803 +0.7 5.9 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4094 +0.7 2.6 conserved protein of unknown function compare
PP_1048 +0.7 1.6 putative protein secretion protein for export compare
PP_1683 +0.7 3.0 Transcriptional regulator, MarR family compare
PP_2031 +0.7 1.2 conserved protein of unknown function compare
PP_5453 +0.7 2.1 conserved protein of unknown function compare
PP_4171 +0.7 6.0 conserved exported protein of unknown function compare
PP_5145 +0.7 6.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2319 +0.6 3.8 conserved protein of unknown function compare
PP_5201 +0.6 1.6 conserved protein of unknown function, UPF0149 family compare
PP_1623 +0.6 4.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_1632 +0.6 1.7 conserved protein of unknown function compare
PP_1702 +0.6 2.4 Recombination-associated protein RdgC compare
PP_2148 +0.6 4.6 transcription-repair coupling factor compare
PP_0737 +0.6 3.7 lipid A 3-O-deacylase compare
PP_5100 +0.6 1.8 dITP/XTP pyrophosphatase compare
PP_0961 +0.6 2.9 toluene tolerance protein compare
PP_2082 +0.6 4.6 phosphoenolpyruvate synthetase compare
PP_2299 +0.6 1.3 Trigger factor compare
PP_1761 +0.6 4.5 diguanylate cyclase with phosphodiesterase domain compare
PP_4808 +0.6 1.2 23S rRNA m3psi1915 methyltransferase compare
PP_3320 +0.6 2.9 conserved protein of unknown function compare
PP_5298 +0.6 2.9 putative glutamine amidotransferase compare
PP_1454 +0.6 2.1 conserved protein of unknown function compare
PP_2582 +0.6 2.3 putative Heme oxygenase compare
PP_1979 +0.6 2.2 putative Hydrolase compare
PP_1999 +0.6 0.9 membrane protein required for colicin V production compare
PP_4629 +0.6 2.2 Sensory box protein compare
PP_1176 +0.6 1.6 conserved protein of unknown function compare
PP_4953 +0.6 2.2 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_2340 +0.5 1.4 conserved protein of unknown function compare
PP_2681 +0.5 1.2 coenzyme PQQ synthesis protein D compare
PP_2724 +0.5 2.2 conserved protein of unknown function compare
PP_1218 +0.5 1.9 putative acyl-CoA thioesterase compare
PP_5153 +0.5 3.2 putative isomerase/hydrolase compare
PP_1719 +0.5 3.4 Tail-specific protease prc compare
PP_3647 +0.5 2.0 putative Oxidoreductase compare
PP_4005 +0.5 2.7 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_2511 +0.5 2.2 conserved protein of unknown function compare
PP_4109 +0.5 2.2 conserved protein of unknown function compare
PP_5338 +0.5 1.2 aspartate ammonia-lyase compare
PP_3591 +0.5 3.0 Delta 1-piperideine-2-carboxylate reductase compare
PP_5617 +0.5 2.0 conserved protein of unknown function compare
PP_4213 +0.5 1.5 putative dipeptidase compare
PP_5279 +0.5 1.5 conserved protein of unknown function compare
PP_5146 +0.5 3.2 RNA pyrophosphohydrolase compare
PP_0566 +0.5 0.8 translation-related factor compare
PP_5495 +0.5 1.0 protein of unknown function compare
PP_2181 +0.5 1.6 Transcriptional regulator, Cro/CI family compare
PP_1344 +0.5 1.0 conserved protein of unknown function compare
PP_3645 +0.5 2.9 putative L-proline amide hydrolase compare
PP_2322 +0.5 3.4 Major outer membrane lipoprotein compare
PP_5039 +0.5 1.6 conserved protein of unknown function compare
PP_2229 +0.5 1.7 putative K(+)/H(+) antiporter subunit C compare
PP_1504 +0.5 2.7 conserved protein of unknown function compare
PP_2826 +0.5 2.3 Transcriptional regulator MexT compare
PP_1441 +0.5 2.5 tRNA (cmo5U34)-methyltransferase compare
PP_2163 +0.5 2.5 VacJ lipoprotein compare
PP_2360 +0.5 1.7 putative type 1 pili subunit CsuA/B protein compare
PP_2387 +0.5 1.6 conserved protein of unknown function compare
PP_3083 +0.5 2.1 putative Membrane protein compare
PP_1515 +0.5 2.5 Transcriptional regulator, tetR family compare
PP_1214 +0.5 1.1 putative transcriptional regulatory protein compare
PP_0919 +0.5 1.2 conserved protein of unknown function compare
PP_0624 +0.5 2.7 Uncharacterized protein YfiH compare
PP_1827 +0.5 2.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_4528 +0.5 1.5 conserved protein of unknown function compare
PP_0697 +0.5 3.4 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_2791 +0.5 2.2 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_5253 +0.5 0.9 Arylesterase compare
PP_1554 +0.5 1.0 conserved protein of unknown function compare
PP_0195 +0.5 1.1 conserved protein of unknown function compare
PP_3052 +0.5 1.0 conserved protein of unknown function compare
PP_0891 +0.5 2.9 conserved exported protein of unknown function compare
PP_2510 +0.5 0.8 conserved protein of unknown function compare
PP_2972 +0.5 1.4 conserved protein of unknown function compare
PP_1022 +0.5 1.7 glucose 6-phosphate-1-dehydrogenase compare
PP_3419 +0.5 3.3 Sigma-54 dependent transcriptional regulator/response regulator compare
PP_2547 +0.5 1.4 Transcriptional regulator, LysR family compare
PP_3938 +0.5 0.7 conserved protein of unknown function compare
PP_5350 +0.5 1.3 Transcriptional regulator, RpiR family compare
PP_3738 +0.4 2.2 putative Transcriptional regulator VanR compare
PP_3239 +0.4 1.5 putative cointegrate resolution protein T Tn4652 compare
PP_5058 +0.4 2.1 Carboxy-terminal-processing protease compare
PP_4997 +0.4 1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0092 +0.4 2.1 putative lipoprotein compare
PP_5619 +0.4 2.3 protein of unknown function compare
PP_2140 +0.4 1.9 conserved protein of unknown function compare
PP_5525 +0.4 1.6 conserved exported protein of unknown function compare
PP_3480 +0.4 2.0 conserved protein of unknown function compare
PP_4162 +0.4 1.7 conserved membrane protein of unknown function compare
PP_2729 +0.4 1.6 conserved protein of unknown function compare
PP_1225 +0.4 1.7 7-carboxy-7-deazaguanine synthase compare
PP_0550 +0.4 2.1 conserved protein of unknown function compare
PP_3233 +0.4 1.2 transcriptional regulator with 4Fe-4S cluster, Crp/Fnr family compare
PP_3436 +0.4 2.2 chloramphenicol-sensitive protein compare
PP_5211 +0.4 1.7 ChaC-related protein compare
PP_5471 +0.4 1.1 putative response regulator receiver protein compare
PP_1322 +0.4 0.9 putative Lipoprotein compare
PP_2765 +0.4 0.8 putative Sulfonate monooxygenase MsuD compare
PP_4286 +0.4 2.0 allantoinase compare
PP_0958 +0.4 2.0 phospholipid ABC transporter ATP-binding subunit compare
PP_2907 +0.4 1.2 DNA-binding response regulator compare
PP_3942 +0.4 2.0 maleate isomerase compare
PP_2291 +0.4 1.0 conserved protein of unknown function compare
PP_3831 +0.4 2.4 conserved protein of unknown function compare
PP_2251 +0.4 2.3 conserved membrane protein of unknown function compare
PP_3792 +0.4 1.5 conserved protein of unknown function compare
PP_0846 +0.4 0.7 DnaK-like molecular chaperone specific for IscU compare
PP_1122 +0.4 0.9 OmpA family protein compare
PP_4355 +0.4 1.5 flagellar export apparatus subunit compare
PP_1713 +0.4 1.4 Transcriptional regulator PcaQ compare
PP_0819 +0.4 2.2 conserved ferredoxin-like protein of unknown function compare
PP_2592 +0.4 1.9 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_4835 +0.4 1.1 conserved exported protein of unknown function compare
PP_4517 +0.4 1.3 conserved protein of unknown function compare
PP_2439 +0.4 1.2 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_3128 +0.4 2.9 putative Exopolysaccharide biosynthesis/transport protein compare
PP_0087 +0.4 1.5 conserved exported protein of unknown function compare
PP_3835 +0.4 1.9 Sensory box histidine kinase compare
PP_0556 +0.4 1.4 Acetoin catabolism protein compare
PP_4367 +0.4 2.0 Flagellar assembly protein FliH compare
PP_4386 +0.4 2.5 flagellar basal-body rod protein FlgF compare
PP_2121 +0.4 1.3 putative Lipoprotein compare
PP_1743 +0.4 3.1 acetate permease compare
PP_4722 +0.4 1.7 Transcription elongation factor GreA compare
PP_3216 +0.4 2.3 putative cysteine dioxygenase compare
PP_0781 +0.4 1.6 conserved protein of unknown function compare
PP_3438 +0.4 1.9 conserved membrane protein of unknown function compare
PP_2320 +0.4 3.0 conserved exported protein of unknown function compare
PP_0905 +0.4 1.2 conserved exported protein of unknown function compare
PP_1349 +0.4 1.9 ATP:cob(I)alamin adenosyltransferase compare
PP_2661 +0.4 1.3 conserved protein of unknown function compare
PP_1230 +0.4 2.3 conserved exported protein of unknown function compare
PP_0642 +0.4 1.6 conserved membrane protein of unknown function compare
PP_0191 +0.4 1.3 Transcriptional regulatory protein AlgQ compare
PP_2528 +0.4 2.2 O-acetylhomoserine (thiol)-lyase compare
PP_2716 +0.4 0.8 arsenate reductase compare
PP_1562 +0.4 0.8 putative Phage terminase, small subunit compare
PP_0959 +0.4 1.0 phospholipid ABC transporter compare
PP_0407 +0.4 1.7 DnaJ-like protein DjlA compare
PP_1001 +0.4 1.8 arginine deiminase compare
PP_5586 +0.4 1.8 exported protein of unknown function compare
PP_5661 +0.4 1.2 putative lipoprotein compare
PP_3234 +0.4 1.1 Heat shock protein, HSP20 family compare
PP_2700 +0.4 1.7 AhpC/TSA family protein compare
PP_4946 +0.4 2.4 sodium/L-proline transporter compare
PP_1776 +0.4 3.2 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5670 +0.4 1.6 conserved protein of unknown function compare
PP_0630 +0.4 0.6 DNA gyrase inhibitor YacG compare
PP_5626 +0.4 2.3 putative phage repressor-like, DNA-binding domain compare
PP_5317 +0.4 0.6 Probable chorismate pyruvate-lyase compare
PP_2325 +0.4 2.6 2-dehydropantoate 2-reductase compare
PP_2351 +0.4 3.1 propionyl-CoA synthetase compare
PP_4332 +0.4 1.3 Chemotaxis protein CheW compare
PP_3392 +0.4 1.1 conserved protein of unknown function compare
PP_1404 +0.4 1.3 conserved protein of unknown function compare
PP_0725 +0.4 1.5 conserved hypothetical TPR repeat protein compare
PP_2084 +0.4 1.9 Putative regulator of ribonuclease activity compare
PP_2646 +0.4 1.6 conserved protein of unknown function compare
PP_4100 +0.4 2.3 Transcriptional regulator, Cro/CI family compare
PP_4938 +0.4 2.2 putative Glycosyl transferase compare
PP_2581 +0.4 0.7 conserved protein of unknown function compare
PP_3866 +0.4 1.1 conserved protein of unknown function compare
PP_5073 +0.4 1.1 conserved exported protein of unknown function compare
PP_2274 +0.4 1.0 conserved protein of unknown function compare
PP_1284 +0.4 2.3 Alginate production protein AlgE compare
PP_0353 +0.4 1.6 Exonuclease compare
PP_1021 +0.4 2.4 DNA-binding transcriptional regulator compare
PP_2290 +0.3 1.2 conserved protein of unknown function compare
PP_2318 +0.3 1.9 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_3034 +0.3 1.3 putative Regulator protein compare
PP_2138 +0.3 1.8 conserved protein of unknown function compare
PP_1439 +0.3 0.7 conserved exported protein of unknown function compare
PP_0258 +0.3 1.4 regulator of murein cross-linking compare
PP_0332 +0.3 1.0 putative Acyltransferase compare
PP_1692 +0.3 1.1 conserved protein of unknown function compare
PP_3122 +0.3 1.3 acetoacetyl CoA-transferase (subunit A) compare
PP_3748 +0.3 1.0 conserved hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 3-Hydroxypropionate in Pseudomonas putida KT2440

For carbon source 3-Hydroxypropionate across organisms