Experiment set12IT014 for Pseudomonas putida KT2440

Compare to:

Vanillic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4890 -7.5 -7.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0966 -7.4 -8.9 Histidinol dehydrogenase compare
PP_4678 -7.2 -13.8 Ketol-acid reductoisomerase compare
PP_5015 -7.1 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0967 -6.9 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1986 -6.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0420 -6.6 -14.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5097 -6.6 -14.8 homoserine O-acetyltransferase compare
PP_0422 -6.5 -7.7 Indole-3-glycerol phosphate synthase compare
PP_0787 -6.4 -6.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3952 -6.4 -12.3 3-oxoadipate CoA-transferase subunit A compare
PP_1995 -6.4 -6.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0965 -6.4 -12.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1985 -6.4 -6.9 3-isopropylmalate dehydratase large subunit compare
PP_1079 -6.4 -6.2 Ornithine carbamoyltransferase compare
PP_5098 -6.4 -9.7 methionine biosynthesis protein MetW compare
PP_3511 -6.3 -11.0 Branched-chain-amino-acid aminotransferase compare
PP_0691 -6.2 -4.3 Glutamate 5-kinase compare
PP_4679 -6.1 -8.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -6.1 -18.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -6.1 -4.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0417 -6.1 -21.7 Anthranilate synthase component 1 compare
PP_5185 -6.1 -5.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1379 -6.0 -9.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_2371 -5.9 -9.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0293 -5.9 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2001 -5.8 -11.7 O-succinylhomoserine sulfhydrylase compare
PP_0164 -5.8 -9.7 conserved protein of unknown function compare
PP_4723 -5.8 -10.5 Carbamoyl-phosphate synthase large chain compare
PP_3736 -5.7 -12.7 vanillate O-demethylase oxygenase subunit conserved
PP_1377 -5.6 -10.4 beta-ketoadipyl-CoA thiolase compare
PP_1988 -5.6 -9.8 3-isopropylmalate dehydrogenase compare
PP_5155 -5.6 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5128 -5.5 -8.9 Dihydroxy-acid dehydratase compare
PP_1088 -5.4 -10.9 Argininosuccinate synthase compare
PP_0289 -5.3 -10.2 Imidazoleglycerol-phosphate dehydratase compare
PP_4909 -5.3 -9.4 phosphoserine phosphatase compare
PP_0290 -5.3 -8.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3951 -5.2 -6.3 3-oxoadipate CoA-transferase subunit A compare
PP_0421 -5.1 -7.8 Anthranilate phosphoribosyltransferase compare
PP_1375 -5.1 -15.2 transcription regulatory protein (pca regulon) compare
PP_3999 -5.0 -9.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4724 -5.0 -8.4 Carbamoyl-phosphate synthase small chain compare
PP_5014 -5.0 -5.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_1380 -4.9 -7.0 3-oxoadipate enol-lactonase 2 compare
PP_3737 -4.8 -10.3 vanillate O-demethylase oxidoreductase conserved
PP_5095 -4.6 -3.2 pyrroline-5-carboxylate reductase compare
PP_0082 -4.6 -5.5 tryptophan synthase alpha chain compare
PP_0083 -4.6 -7.0 tryptophan synthase beta chain compare
PP_0001 -4.5 -3.1 probable chromosome-partitioning protein compare
PP_2168 -4.4 -11.1 Transaldolase compare
PP_0339 -4.4 -4.3 Pyruvate dehydrogenase E1 component compare
PP_0184 -4.3 -5.9 Argininosuccinate lyase compare
PP_4799 -4.2 -4.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1713 -4.2 -2.5 Transcriptional regulator PcaQ compare
PP_5289 -4.0 -5.0 Acetylglutamate kinase compare
PP_4655 -4.0 -8.3 protocatechuate 3,4-dioxygenase alpha chain compare
PP_4656 -3.9 -6.6 protocatechuate 3,4-dioxygenase beta chain compare
PP_4696 -3.9 -3.8 Nitrogen regulation protein NR(I) compare
PP_0292 -3.8 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4999 -3.6 -3.4 dihydroorotase-like protein compare
PP_1654 -3.5 -3.4 cysteine synthase B compare
PP_1231 -3.5 -6.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1616 -3.2 -8.6 formaldehyde dehydrogenase, glutathione-dependent compare
PP_0393 -3.1 -2.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1233 -3.0 -5.9 sulfurtransferase compare
PP_3590 -3.0 -5.5 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4993 -3.0 -3.5 Glutathione synthetase compare
PP_1381 -3.0 -1.9 4-carboxymuconolactone decarboxylase compare
PP_2328 -2.9 -7.6 Phosphoadenosine phosphosulfate reductase compare
PP_2402 -2.9 -3.6 putative Sensor histidine kinase compare
PP_1025 -2.9 -7.5 2-isopropylmalate synthase compare
PP_4364 -2.8 -4.8 putative Anti-sigma F factor antagonist compare
PP_5104 -2.8 -9.5 thiazole synthase compare
PP_4700 -2.7 -2.6 pantothenate synthetase compare
PP_1826 -2.7 -2.9 Hydrolase, isochorismatase family compare
PP_0291 -2.7 -2.5 conserved protein of unknown function compare
PP_0406 -2.6 -5.7 Nucleotidyltransferase family protein compare
PP_2145 -2.5 -7.7 beta-N-acetylglucosaminidase compare
PP_4782 -2.5 -5.4 Phosphomethylpyrimidine kinase compare
PP_2388 -2.5 -4.9 Transporter, LysE family compare
PP_4342 -2.5 -4.0 flagellar synthesis regulator, putative ATPase compare
PP_2390 -2.4 -7.6 Transcriptional regulator, LysR family compare
PP_5303 -2.3 -3.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1355 -2.3 -15.0 Muropeptide permease AmpG compare
PP_1428 -2.2 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_1615 -2.2 -6.1 Transcriptional regulator, LysR family conserved
PP_4695 -2.2 -9.1 Sensory box histidine kinase compare
PP_3637 -2.2 -1.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0405 -2.1 -13.8 conserved protein of unknown function compare
PP_2000 -2.1 -1.4 amidophosphoribosyl transferase compare
PP_2370 -2.1 -1.7 conserved protein of unknown function compare
PP_0434 -2.0 -8.9 Anhydro-N-acetylmuramic acid kinase compare
PP_0888 -2.0 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_4126 -1.9 -2.5 NADH-quinone oxidoreductase subunit I compare
PP_1733 -1.9 -3.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_4058 -1.9 -7.9 1,4-alpha-glucan branching enzyme compare
PP_0833 -1.8 -1.3 queuine tRNA-ribosyltransferase compare
PP_0368 -1.8 -7.5 putative Acyl-CoA dehydrogenase compare
PP_4922 -1.8 -7.6 Phosphomethylpyrimidine synthase compare
PP_0846 -1.7 -1.5 DnaK-like molecular chaperone specific for IscU compare
PP_1994 -1.7 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_0435 -1.7 -7.6 Peptidase, M23/M37 family compare
PP_4124 -1.7 -4.6 NADH-quinone oxidoreductase subunit G compare
PP_4120 -1.7 -3.5 NADH-quinone oxidoreductase subunit B compare
PP_0735 -1.7 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_0117 -1.7 -7.0 Zn(2+) ABC transporter - permease subunit compare
PP_5227 -1.7 -6.2 diaminopimelate decarboxylase compare
PP_1764 -1.6 -6.0 Phosphoglycolate phosphatase 2 compare
PP_1378 -1.6 -5.2 alpha-ketoglutarate permease compare
PP_1493 -1.6 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4699 -1.6 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4519 -1.6 -10.3 Agglutination protein compare
PP_4122 -1.6 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3494 -1.5 -5.8 conserved exported protein of unknown function compare
PP_5001 -1.5 -2.1 protease HslVU, ATPase component compare
PP_0914 -1.5 -9.0 GGDEF domain protein compare
PP_2356 -1.5 -6.8 putative Phytochrome family protein compare
PP_4296 -1.5 -1.9 conserved exported protein of unknown function compare
PP_3662 -1.5 -6.8 conserved protein of unknown function compare
PP_4199 -1.4 -1.6 putative Lipoprotein compare
PP_3603 -1.4 -4.9 Transcriptional regulator, GntR family compare
PP_0120 -1.4 -4.4 putative zinc ABC transporter compare
PP_2433 -1.4 -1.7 conserved protein of unknown function compare
PP_3493 -1.4 -7.2 Transcriptional regulator, LysR family compare
PP_4355 -1.4 -2.1 flagellar export apparatus subunit compare
PP_1783 -1.4 -1.0 dTDP-glucose pyrophosphorylase compare
PP_2136 -1.4 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1215 -1.4 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_2137 -1.4 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_5350 -1.4 -2.2 Transcriptional regulator, RpiR family compare
PP_5085 -1.3 -4.4 malic enzyme B compare
PP_0167 -1.3 -9.4 Toxin secretion ATP-binding protein compare
PP_2341 -1.3 -0.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0673 -1.3 -2.7 conserved protein of unknown function compare
PP_3286 -1.3 -4.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0937 -1.3 -3.8 endoribonuclease G (RNAse G) compare
PP_0168 -1.3 -10.5 putative surface adhesion protein compare
PP_2354 -1.3 -6.4 Sensory box histidine kinase/response regulator compare
PP_0881 -1.3 -3.8 dipeptide ABC transporter - putative membrane subunit compare
PP_1348 -1.3 -4.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1045 -1.3 -1.8 Type II secretion pathway protein XcpP compare
PP_0612 -1.3 -6.0 FAD-dependent glycine/D-amino acid oxidase compare
PP_5230 -1.3 -1.6 Tyrosine recombinase XerC compare
PP_5217 -1.2 -8.6 Polyphosphate kinase compare
PP_1208 -1.2 -1.8 conserved protein of unknown function, SlyX family compare
PP_5146 -1.2 -6.2 RNA pyrophosphohydrolase compare
PP_3248 -1.2 -2.0 Dyp-type peroxidase family protein compare
PP_4895 -1.2 -1.4 tRNA dimethylallyltransferase compare
PP_2414 -1.2 -1.6 conserved exported protein of unknown function compare
PP_1367 -1.2 -3.3 formyltetrahydrofolate hydrolase compare
PP_0165 -1.2 -9.1 GGDEF domain protein compare
PP_1076 -1.2 -1.6 aquaglyceroporin compare
PP_4098 -1.2 -1.7 UvrABC system protein C compare
PP_5310 -1.2 -4.1 junction-specific ATP-dependent DNA helicase compare
PP_0848 -1.2 -1.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4130 -1.2 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4340 -1.1 -2.1 response regulator for chemotactic signal transduction compare
PP_4009 -1.1 -3.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_3519 -1.1 -1.3 putative Lipoprotein compare
PP_5352 -1.1 -5.7 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4338 -1.1 -5.4 Chemotaxis histidine kinase CheA compare
PP_4480 -1.1 -5.0 arginine N-succinyltransferase, subunit alpha compare
PP_0166 -1.1 -7.6 HlyD family secretion protein compare
PP_0516 -1.1 -2.8 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_3539 -1.1 -2.4 putative Transcriptional regulator compare
PP_4131 -1.1 -4.5 NADH-quinone oxidoreductase subunit N compare
PP_4121 -1.1 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1679 -1.0 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1074 -1.0 -3.0 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4369 -1.0 -5.5 Flagellar M-ring protein compare
PP_5114 -1.0 -1.3 putative adenine methyltransferase compare
PP_3649 -1.0 -1.9 Transcriptional regulator, GntR family compare
PP_4196 -1.0 -1.7 conserved exported protein of unknown function compare
PP_3102 -1.0 -2.2 conserved protein of unknown function compare
PP_0988 -1.0 -7.2 glycine dehydrogenase compare
PP_1629 -1.0 -2.8 Protein RecA compare
PP_4622 -1.0 -4.7 Hmg transcriptional repressor compare
PP_3048 -1.0 -2.3 conserved protein of unknown function compare
PP_3105 -1.0 -1.3 conserved membrane protein of unknown function compare
PP_1206 -1.0 -4.1 basic-amino-acid specific porin OprD compare
PP_1217 -1.0 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0118 -1.0 -3.9 zinc import ATP-binding protein compare
PP_1589 -1.0 -4.4 uridylyltransferase compare
PP_2029 -0.9 -1.9 von Willebrand factor type A domain protein compare
PP_5225 -0.9 -0.9 frataxin compare
PP_1198 -0.9 -1.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3821 -0.9 -3.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4365 -0.9 -3.4 Flagellar protein FliJ compare
PP_2403 -0.9 -1.6 Chemotaxis protein CheY compare
PP_1426 -0.9 -6.1 L-aspartate oxidase compare
PP_5035 -0.9 -2.8 Histidine utilization repressor compare
PP_1387 -0.9 -2.7 Probable HTH-type transcriptional regulator TtgR compare
PP_3527 -0.9 -5.6 Transcriptional regulator, TetR family compare
PP_2081 -0.9 -4.2 putative phosphoenolpyruvate synthase regulatory protein compare
PP_4880 -0.9 -5.2 exoribonuclease R compare
PP_3484 -0.9 -3.8 Response regulator receiver protein compare
PP_0878 -0.9 -4.0 dipeptide ABC transporter, binding subunit compare
PP_4333 -0.9 -3.7 CheW domain protein compare
PP_4829 -0.9 -1.4 putative precorrin-3B synthase compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source Vanillic Acid in Pseudomonas putida KT2440

For carbon source Vanillic Acid across organisms