Experiment set11IT089 for Pseudomonas putida KT2440

Compare to:

carbon source 4-vinylphenol 0.01 mM

200 most important genes:

  gene name fitness t score description  
PP_1109 -5.2 -15.2 Transcriptional regulator, GntR family compare
PP_0290 -4.9 -3.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1110 -4.9 -4.5 serine acetyltransferase compare
PP_4890 -4.9 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5348 -4.8 -8.1 Transcriptional regulator, LysR family compare
PP_3376 -4.8 -4.7 putative phosphonate dehydrogenase compare
PP_4678 -4.7 -9.1 Ketol-acid reductoisomerase compare
PP_1985 -4.6 -3.2 3-isopropylmalate dehydratase large subunit compare
PP_1988 -4.5 -4.4 3-isopropylmalate dehydrogenase compare
PP_5098 -4.5 -5.3 methionine biosynthesis protein MetW compare
PP_0967 -4.5 -4.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5097 -4.4 -6.7 homoserine O-acetyltransferase compare
PP_0293 -4.4 -2.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4680 -4.4 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -4.3 -9.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4109 -4.3 -3.0 conserved protein of unknown function compare
PP_3511 -4.2 -6.3 Branched-chain-amino-acid aminotransferase compare
PP_0787 -4.1 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5347 -4.1 -6.8 pyruvate carboxylase subunit A compare
PP_3790 -4.1 -9.5 diaminopimelate epimerase compare
PP_0292 -4.1 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4922 -4.1 -11.4 Phosphomethylpyrimidine synthase compare
PP_2168 -4.0 -3.9 Transaldolase compare
PP_5346 -4.0 -6.7 pyruvate carboxylase subunit B compare
PP_0966 -4.0 -3.9 Histidinol dehydrogenase compare
PP_5104 -4.0 -4.7 thiazole synthase compare
PP_5155 -4.0 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2001 -3.9 -7.8 O-succinylhomoserine sulfhydrylase compare
PP_0422 -3.8 -5.2 Indole-3-glycerol phosphate synthase compare
PP_0417 -3.8 -12.4 Anthranilate synthase component 1 compare
PP_5303 -3.6 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1088 -3.6 -3.5 Argininosuccinate synthase compare
PP_2646 -3.5 -3.0 conserved protein of unknown function compare
PP_2031 -3.5 -1.7 conserved protein of unknown function compare
PP_1995 -3.4 -3.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1231 -3.4 -2.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0965 -3.4 -7.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4679 -3.3 -2.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1111 -3.3 -6.2 putative Synthetase compare
PP_5090 -3.2 -1.6 putative cell division protein compare
PP_2348 -3.2 -4.8 Sensor histidine kinase compare
PP_2388 -3.2 -5.5 Transporter, LysE family compare
PP_0362 -3.1 -11.5 Biotin synthase compare
PP_0735 -3.1 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_0421 -3.1 -7.5 Anthranilate phosphoribosyltransferase compare
PP_3244 -3.0 -2.8 Magnesium transporter, MgtC family compare
PP_5289 -3.0 -3.5 Acetylglutamate kinase compare
PP_5185 -3.0 -2.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -2.9 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_1348 -2.9 -5.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1233 -2.9 -2.8 sulfurtransferase compare
PP_5128 -2.9 -6.6 Dihydroxy-acid dehydratase compare
PP_4917 -2.8 -4.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0289 -2.8 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4569 -2.8 -3.8 conserved protein of unknown function compare
PP_5491 -2.7 -3.0 conserved protein of unknown function with SEC-C motif domain compare
PP_5075 -2.7 -9.6 glutamate synthase (NADPH) beta subunit compare
PP_2327 -2.6 -2.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5705 -2.6 -1.8 protein of unknown function compare
PP_5076 -2.6 -13.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_1079 -2.5 -3.4 Ornithine carbamoyltransferase compare
PP_1025 -2.5 -7.8 2-isopropylmalate synthase compare
PP_4909 -2.4 -1.7 phosphoserine phosphatase compare
PP_4782 -2.4 -1.7 Phosphomethylpyrimidine kinase compare
PP_2371 -2.4 -4.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5248 -2.3 -1.0 putative hydrolase compare
PP_0220 -2.3 -3.0 methionine import ATP-binding protein metN2 compare
PP_5600 -2.3 -2.3 conserved protein of unknown function compare
PP_2390 -2.3 -4.3 Transcriptional regulator, LysR family compare
PP_2433 -2.3 -2.8 conserved protein of unknown function compare
PP_3999 -2.3 -1.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4094 -2.3 -2.2 conserved protein of unknown function compare
PP_1142 -2.3 -0.7 conserved protein of unknown function compare
PP_0082 -2.2 -2.2 tryptophan synthase alpha chain compare
PP_2513 -2.2 -5.9 4-oxalomesaconate tautomerase compare
PP_5015 -2.2 -1.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4937 -2.2 -3.3 toluene tolerance protein compare
PP_3245 -2.2 -0.9 conserved protein of unknown function compare
PP_0291 -2.2 -3.5 conserved protein of unknown function compare
PP_1426 -2.2 -9.1 L-aspartate oxidase compare
PP_1208 -2.1 -1.1 conserved protein of unknown function, SlyX family compare
PP_5202 -2.1 -1.6 putative cell division protein compare
PP_1099 -2.1 -2.1 Cold shock protein CapB compare
PP_0261 -2.1 -3.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2645 -2.1 -8.0 magnesium transporter, ATP-dependent compare
PP_2714 -2.0 -5.2 Sensor histidine kinase compare
PP_2640 -2.0 -3.1 Acetyltransferase, GNAT family compare
PP_4684 -2.0 -3.8 conserved protein of unknown function with kinase-like domain compare
PP_4961 -1.9 -1.2 putative Lipoprotein compare
PP_1063 -1.9 -7.2 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_4870 -1.8 -2.2 Azurin compare
PP_2429 -1.8 -0.7 putative Membrane protein compare
PP_1570 -1.8 -3.9 Head-tail adaptor compare
PP_5495 -1.7 -2.3 protein of unknown function compare
PP_5328 -1.7 -3.2 putative phosphate transport system permease protein compare
PP_2747 -1.7 -1.7 conserved protein of unknown function compare
PP_3417 -1.7 -2.9 D-gluconate transporter compare
PP_0879 -1.7 -4.8 dipeptide ABC transporter - putative ATP binding subunit compare
PP_0125 -1.7 -2.4 putative cytochrome c-type protein compare
PP_3880 -1.7 -0.9 conserved exported protein of unknown function compare
PP_2152 -1.7 -1.6 glycerophosphoryl diester phosphodiesterase compare
PP_0978 -1.6 -3.1 conserved protein of unknown function compare
PP_1508 -1.6 -3.8 conserved protein of unknown function compare
PP_2060 -1.6 -1.3 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3052 -1.6 -1.5 conserved protein of unknown function compare
PP_5027 -1.6 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_1304 -1.6 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2328 -1.5 -1.8 Phosphoadenosine phosphosulfate reductase compare
PP_1981 -1.5 -3.4 tRNA-dihydrouridine synthase C compare
PP_3365 -1.5 -1.0 Acetolactate synthase compare
PP_2575 -1.5 -2.4 conserved exported protein of unknown function compare
PP_3908 -1.5 -1.9 conserved protein of unknown function compare
PP_5508 -1.5 -1.2 conserved protein of unknown function compare
PP_2137 -1.5 -1.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_0878 -1.5 -3.3 dipeptide ABC transporter, binding subunit compare
PP_3341 -1.5 -2.0 nickel-responsive regulator compare
PP_5083 -1.4 -1.9 putative Type IV pili biogenesis protein PilM compare
PP_0673 -1.4 -1.9 conserved protein of unknown function compare
PP_2370 -1.4 -1.3 conserved protein of unknown function compare
PP_3102 -1.4 -2.9 conserved protein of unknown function compare
PP_4060 -1.4 -7.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5159 -1.4 -3.1 conserved protein of unknown function compare
PP_2580 -1.4 -2.1 conserved protein of unknown function compare
PP_5008 -1.4 -1.1 Poly granule-associated protein compare
PP_0113 -1.4 -3.7 methionine ABC transporter, permease protein compare
PP_4681 -1.4 -2.1 conserved protein of unknown function compare
PP_1269 -1.4 -1.3 Universal stress protein family compare
PP_4227 -1.4 -1.3 conserved protein of unknown function compare
PP_0957 -1.3 -1.1 D-arabinose 5-phosphate isomerase compare
PP_2309 -1.3 -1.1 conserved protein of unknown function compare
PP_2692 -1.3 -5.0 putative Transporter, BCCT family compare
PP_2441 -1.3 -1.6 conserved protein of unknown function compare
PP_2510 -1.3 -1.7 conserved protein of unknown function compare
PP_3201 -1.3 -3.2 BNR domain protein compare
PP_1164 -1.3 -1.8 Transcriptional regulator, LysR family compare
PP_2537 -1.3 -2.5 conserved protein of unknown function compare
PP_3064 -1.3 -1.4 Phage tail protein compare
PP_5313 -1.3 -1.5 DNA-binding protein HU-alpha compare
PP_1253 -1.3 -3.7 Transcriptional regulator, ArsR family compare
PP_3034 -1.3 -3.2 putative Regulator protein compare
PP_4897 -1.3 -1.8 N-acetylmuramoyl-L-alanine amidase compare
PP_0366 -1.3 -2.1 dethiobiotin synthetase compare
PP_5320 -1.3 -4.5 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_4387 -1.3 -1.8 conserved exported protein of unknown function compare
PP_0910 -1.3 -3.6 conserved exported protein of unknown function compare
PP_5327 -1.3 -3.6 putative phosphate ABC transporter, permease subunit compare
PP_3946 -1.3 -0.5 HTH-type transcriptional repressor NicR compare
PP_4911 -1.3 -3.2 conserved protein of unknown function compare
PP_1328 -1.2 -1.1 Protein MraZ compare
PP_5604 -1.2 -2.5 putative subtilisin-like serine protease compare
PP_1122 -1.2 -1.4 OmpA family protein compare
PP_5359 -1.2 -1.3 CobW/P47K family protein compare
PP_5317 -1.2 -1.4 Probable chorismate pyruvate-lyase compare
PP_0184 -1.2 -0.8 Argininosuccinate lyase compare
PP_0035 -1.2 -2.1 putative bactoprenol-linked glycose transferase compare
PP_1068 -1.2 -2.2 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_2650 -1.2 -2.1 putative 4-hydroxybutyrate dehydrogenase compare
PP_0425 -1.2 -1.5 conserved protein of unknown function compare
PP_3762 -1.2 -2.0 Response regulator compare
PP_4984 -1.2 -3.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3190 -1.2 -2.0 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_4832 -1.2 -1.9 Precorrin-6x reductase compare
PP_4238 -1.2 -2.1 conserved protein of unknown function compare
PP_1644 -1.2 -2.4 NAD(P)H dehydrogenase (quinone) compare
PP_0507 -1.2 -2.8 putative ABC efflux transporter, ATP-binding protein compare
PP_4364 -1.2 -3.8 putative Anti-sigma F factor antagonist compare
PP_2030 -1.2 -2.1 conserved protein of unknown function compare
PP_1662 -1.2 -2.1 conserved protein of unknown function compare
PP_3525 -1.2 -3.3 conserved exported protein of unknown function compare
PP_4271 -1.1 -0.4 conserved protein of unknown function compare
PP_5648 -1.1 -2.4 conserved exported protein of unknown function compare
PP_1898 -1.1 -1.1 MotA/TolQ/ExbB proton channel family protein compare
PP_3891 -1.1 -2.3 conserved protein of unknown function compare
PP_5476 -1.1 -3.7 conserved protein of unknown function compare
PP_4797 -1.1 -1.4 conserved protein of unknown function compare
PP_4054 -1.1 -1.1 conserved protein of unknown function compare
PP_2124 -1.1 -2.4 putative Glycosyl transferase compare
PP_2649 -1.1 -1.6 Transcriptional regulator, LysR family compare
PP_1326 -1.1 -1.2 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4509 -1.1 -2.2 conserved protein of unknown function compare
PP_4462 -1.1 -2.9 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
PP_1739 -1.1 -1.7 conserved membrane protein of unknown function compare
PP_0117 -1.1 -2.7 Zn(2+) ABC transporter - permease subunit compare
PP_3902 -1.1 -1.0 conserved protein of unknown function compare
PP_1218 -1.1 -1.9 putative acyl-CoA thioesterase compare
PP_0508 -1.1 -1.6 conserved exported protein of unknown function compare
PP_0506 -1.1 -5.5 putative ABC efflux transporter, permease protein compare
PP_5558 -1.1 -1.8 putative transcriptional xre family of phage origin compare
PP_3043 -1.1 -1.2 conserved protein of unknown function compare
PP_1011 -1.1 -3.9 glucokinase compare
PP_5423 -1.1 -1.8 conserved membrane protein of unknown function compare
PP_5488 -1.1 -2.1 conserved protein of unknown function compare
PP_2494 -1.1 -3.0 conserved protein of unknown function compare
PP_4178 -1.1 -2.3 Dienelactone hydrolase family protein compare
PP_2794 -1.0 -1.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4503 -1.0 -2.1 DNA-binding response regulator compare
PP_3806 -1.0 -1.6 Hydrolase, isochorismatase family compare
PP_3637 -1.0 -1.0 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4196 -1.0 -1.2 conserved exported protein of unknown function compare
PP_5274 -1.0 -0.7 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source 4-vinylphenol in Pseudomonas putida KT2440

For carbon source 4-vinylphenol across organisms