Experiment set11IT085 for Pseudomonas putida KT2440

Compare to:

carbon source 3-O-methyl-glucose 50 mM

200 most important genes:

  gene name fitness t score description  
PP_2388 -5.1 -3.5 Transporter, LysE family compare
PP_0787 -5.0 -3.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4890 -5.0 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_0290 -5.0 -3.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5348 -4.9 -7.5 Transcriptional regulator, LysR family compare
PP_3511 -4.9 -3.4 Branched-chain-amino-acid aminotransferase compare
PP_1110 -4.8 -4.1 serine acetyltransferase compare
PP_0422 -4.8 -3.3 Indole-3-glycerol phosphate synthase compare
PP_4678 -4.8 -7.3 Ketol-acid reductoisomerase compare
PP_3790 -4.8 -5.7 diaminopimelate epimerase compare
PP_1109 -4.6 -14.8 Transcriptional regulator, GntR family compare
PP_1988 -4.6 -3.2 3-isopropylmalate dehydrogenase compare
PP_0965 -4.5 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1985 -4.5 -3.1 3-isopropylmalate dehydratase large subunit compare
PP_4680 -4.5 -7.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -4.4 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5098 -4.4 -5.2 methionine biosynthesis protein MetW compare
PP_0420 -4.4 -9.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5097 -4.3 -8.2 homoserine O-acetyltransferase compare
PP_4922 -4.1 -10.8 Phosphomethylpyrimidine synthase compare
PP_0967 -4.1 -6.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2001 -4.0 -7.7 O-succinylhomoserine sulfhydrylase compare
PP_1111 -4.0 -6.7 putative Synthetase compare
PP_0421 -3.8 -5.8 Anthranilate phosphoribosyltransferase compare
PP_0966 -3.8 -4.5 Histidinol dehydrogenase compare
PP_0289 -3.7 -3.6 Imidazoleglycerol-phosphate dehydratase compare
PP_2168 -3.7 -6.1 Transaldolase compare
PP_2645 -3.6 -6.5 magnesium transporter, ATP-dependent compare
PP_0417 -3.6 -12.9 Anthranilate synthase component 1 compare
PP_5347 -3.6 -9.7 pyruvate carboxylase subunit A compare
PP_5128 -3.6 -8.8 Dihydroxy-acid dehydratase compare
PP_5104 -3.6 -5.9 thiazole synthase compare
PP_1088 -3.5 -4.2 Argininosuccinate synthase compare
PP_5508 -3.4 -1.4 conserved protein of unknown function compare
PP_1231 -3.4 -2.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0292 -3.4 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5289 -3.4 -2.3 Acetylglutamate kinase compare
PP_1348 -3.4 -5.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2348 -3.3 -3.9 Sensor histidine kinase compare
PP_4679 -3.3 -3.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3244 -3.2 -2.1 Magnesium transporter, MgtC family compare
PP_0362 -3.2 -10.2 Biotin synthase compare
PP_0735 -3.1 -1.3 molybdopterin-synthase adenylyltransferase compare
PP_5303 -3.1 -4.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4937 -3.1 -3.0 toluene tolerance protein compare
PP_1995 -3.0 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1366 -3.0 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_1233 -3.0 -2.1 sulfurtransferase compare
PP_5185 -3.0 -2.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5346 -3.0 -7.8 pyruvate carboxylase subunit B compare
PP_3376 -2.9 -4.5 putative phosphonate dehydrogenase compare
PP_4835 -2.8 -2.8 conserved exported protein of unknown function compare
PP_5155 -2.7 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0291 -2.7 -4.1 conserved protein of unknown function compare
PP_2327 -2.6 -1.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2414 -2.6 -2.1 conserved exported protein of unknown function compare
PP_5076 -2.6 -13.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_1986 -2.5 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_3505 -2.5 -2.2 conserved protein of unknown function compare
PP_0513 -2.5 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5075 -2.5 -9.1 glutamate synthase (NADPH) beta subunit compare
PP_3411 -2.4 -1.0 conserved protein of unknown function compare
PP_4782 -2.4 -1.6 Phosphomethylpyrimidine kinase compare
PP_5621 -2.4 -1.1 protein of unknown function compare
PP_0082 -2.4 -1.6 tryptophan synthase alpha chain compare
PP_2809 -2.4 -4.4 conserved membrane protein of unknown function compare
PP_1025 -2.4 -7.6 2-isopropylmalate synthase compare
PP_1063 -2.3 -7.1 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_1237 -2.3 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2390 -2.3 -4.8 Transcriptional regulator, LysR family compare
PP_2646 -2.3 -2.3 conserved protein of unknown function compare
PP_4909 -2.3 -2.2 phosphoserine phosphatase compare
PP_4684 -2.3 -3.1 conserved protein of unknown function with kinase-like domain compare
PP_2371 -2.2 -4.4 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -2.2 -1.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4961 -2.1 -1.0 putative Lipoprotein compare
PP_5008 -2.1 -1.6 Poly granule-associated protein compare
PP_3245 -2.1 -0.8 conserved protein of unknown function compare
PP_2044 -2.1 -0.8 conserved inner membrane protein of unknown function compare
PP_2820 -2.0 -2.6 HTH-type transcriptional regulator nfxB compare
PP_4268 -2.0 -0.8 nucleoid-associated broad specificity regulator compare
PP_1426 -2.0 -7.8 L-aspartate oxidase compare
PP_3312 -2.0 -1.6 putative Heat shock protein compare
PP_3880 -2.0 -1.0 conserved exported protein of unknown function compare
PP_5015 -2.0 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2433 -2.0 -1.0 conserved protein of unknown function compare
PP_2681 -2.0 -0.8 coenzyme PQQ synthesis protein D compare
PP_1508 -2.0 -4.3 conserved protein of unknown function compare
PP_5328 -1.9 -4.2 putative phosphate transport system permease protein compare
PP_2714 -1.9 -2.7 Sensor histidine kinase compare
PP_5313 -1.9 -2.4 DNA-binding protein HU-alpha compare
PP_2309 -1.9 -1.3 conserved protein of unknown function compare
PP_0261 -1.9 -3.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2899 -1.8 -0.7 conserved exported protein of unknown function compare
PP_3048 -1.8 -1.8 conserved protein of unknown function compare
PP_4792 -1.7 -1.7 conserved exported protein of unknown function compare
PP_3052 -1.7 -1.4 conserved protein of unknown function compare
PP_2640 -1.7 -3.1 Acetyltransferase, GNAT family compare
PP_2370 -1.7 -1.5 conserved protein of unknown function compare
PP_5202 -1.7 -1.7 putative cell division protein compare
PP_5659 -1.7 -2.1 protein of unknown function compare
PP_4529 -1.7 -2.6 conserved protein of unknown function compare
PP_0878 -1.6 -3.2 dipeptide ABC transporter, binding subunit compare
PP_4094 -1.6 -1.9 conserved protein of unknown function compare
PP_1079 -1.6 -2.8 Ornithine carbamoyltransferase compare
PP_1562 -1.6 -1.1 putative Phage terminase, small subunit compare
PP_3443 -1.6 -4.5 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_3014 -1.5 -2.0 conserved exported protein of unknown function compare
PP_2328 -1.5 -1.5 Phosphoadenosine phosphosulfate reductase compare
PP_4897 -1.5 -3.2 N-acetylmuramoyl-L-alanine amidase compare
PP_1658 -1.5 -1.9 conserved protein of unknown function compare
PP_5725 -1.5 -2.9 protein of unknown function compare
PP_3930 -1.5 -1.1 conserved exported protein of unknown function compare
PP_0910 -1.5 -3.1 conserved exported protein of unknown function compare
PP_0834 -1.5 -1.2 Sec translocation complex subunit YajC compare
PP_1898 -1.5 -1.0 MotA/TolQ/ExbB proton channel family protein compare
PP_2132 -1.5 -2.1 Universal stress protein compare
PP_5604 -1.5 -2.5 putative subtilisin-like serine protease compare
PP_5610 -1.4 -1.6 protein of unknown function compare
PP_3477 -1.4 -2.8 Putative secretion type II protein related to protein G compare
PP_4597 -1.4 -3.5 Cyclic pyranopterin monophosphate synthase compare
PP_0608 -1.4 -2.9 putative type 4 fimbrial biogenesis protein compare
PP_3821 -1.4 -4.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0319 -1.4 -1.1 conserved protein of unknown function compare
PP_5487 -1.4 -3.0 conserved protein of unknown function compare
PP_0879 -1.4 -3.4 dipeptide ABC transporter - putative ATP binding subunit compare
PP_4966 -1.4 -1.7 transcriptional regulator of methionine metabolism compare
PP_1387 -1.4 -3.2 Probable HTH-type transcriptional regulator TtgR compare
PP_0913 -1.4 -4.5 conserved exported protein of unknown function compare
PP_1876 -1.4 -1.4 putative ATP/GTP-binding protein of the AAA+ family compare
PP_2675 -1.3 -1.4 Cytochrome c-type protein compare
PP_3649 -1.3 -2.5 Transcriptional regulator, GntR family compare
PP_0119 -1.3 -3.3 putative zinc uptake regulation protein ZUR compare
PP_3808 -1.3 -1.4 Antibiotic synthesis protein MbtH compare
PP_3496 -1.3 -2.8 Endoribonuclease L-PSP compare
PP_5327 -1.3 -4.3 putative phosphate ABC transporter, permease subunit compare
PP_2737 -1.3 -0.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3417 -1.3 -2.9 D-gluconate transporter compare
PP_5571 -1.3 -1.3 conserved protein of unknown function compare
PP_0569 -1.3 -3.8 MATE efflux family protein compare
PP_3121 -1.3 -1.9 transcriptional regulator, LysR family compare
PP_2430 -1.3 -2.8 Transcriptional regulator, AraC family compare
PP_4723 -1.3 -1.5 Carbamoyl-phosphate synthase large chain compare
PP_0184 -1.2 -0.9 Argininosuccinate lyase compare
PP_3525 -1.2 -2.9 conserved exported protein of unknown function compare
PP_2510 -1.2 -1.6 conserved protein of unknown function compare
PP_4994 -1.2 -2.8 conserved protein of unknown function compare
PP_4379 -1.2 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0022 -1.2 -0.7 hypothetical protein compare
PP_1009 -1.2 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4828 -1.2 -0.6 Precorrin-8X methylmutase compare
PP_1304 -1.2 -4.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2129 -1.2 -4.0 conserved protein of unknown function compare
PP_0508 -1.2 -1.1 conserved exported protein of unknown function compare
PP_0377 -1.2 -0.8 coenzyme PQQ synthesis protein D compare
PP_5495 -1.2 -1.6 protein of unknown function compare
PP_2145 -1.2 -4.2 beta-N-acetylglucosaminidase compare
PP_2785 -1.2 -2.8 conserved exported protein of unknown function compare
PP_5507 -1.2 -1.5 protein of unknown function compare
PP_3191 -1.2 -2.4 putative threonine ammonia-lyase / dehydratase compare
PP_3034 -1.2 -1.7 putative Regulator protein compare
PP_5090 -1.2 -1.1 putative cell division protein compare
PP_1292 -1.2 -3.2 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_5099 -1.2 -3.4 conserved protein of unknown function compare
PP_5546 -1.2 -1.4 conserved protein of unknown function compare
PP_2496 -1.2 -3.2 conserved protein of unknown function compare
PP_1303 -1.1 -3.0 Sulfate adenylyltransferase subunit 2 compare
PP_3875 -1.1 -2.2 conserved protein of unknown function compare
PP_5035 -1.1 -4.4 Histidine utilization repressor compare
PP_3098 -1.1 -0.8 conserved protein of unknown function compare
PP_3787 -1.1 -3.6 conserved protein of unknown function compare
PP_0908 -1.1 -3.8 conserved exported protein of unknown function compare
PP_4940 -1.1 -3.1 Putative glycosyltransferase compare
PP_1389 -1.1 -3.1 Oxaloacetate decarboxylase compare
PP_2959 -1.1 -3.3 Alkylhydroperoxidase AhpD domain protein compare
PP_5334 -1.1 -4.0 conserved membrane protein of unknown function compare
PP_2995 -1.1 -3.4 putative DNA topology modulation kinase FlaR compare
PP_2883 -1.1 -1.0 conserved protein of unknown function compare
PP_1912 -1.1 -1.0 Phosphate acyltransferase compare
PP_5441 -1.1 -1.3 protein of unknown function compare
PP_2537 -1.1 -2.2 conserved protein of unknown function compare
PP_5619 -1.1 -1.5 protein of unknown function compare
PP_0607 -1.1 -1.5 putative Type IV pili biogenesis protein FimT compare
PP_4060 -1.1 -6.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1274 -1.1 -3.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3404 -1.1 -1.8 conserved protein of unknown function compare
PP_5176 -1.0 -1.8 conserved protein of unknown function compare
PP_4701 -1.0 -0.6 glucose-6-phosphate isomerase compare
PP_5204 -1.0 -2.1 conserved protein of unknown function compare
PP_3900 -1.0 -2.0 hypothetical protein compare
PP_1814 -1.0 -1.8 conserved protein of unknown function compare
PP_2624 -1.0 -1.4 conserved protein of unknown function compare
PP_0855 -1.0 -1.1 conserved protein of unknown function compare
PP_4754 -1.0 -2.7 Transcriptional regulator, TetR family compare
PP_1045 -1.0 -1.3 Type II secretion pathway protein XcpP compare
PP_2140 -1.0 -2.6 conserved protein of unknown function compare
PP_5055 -1.0 -1.3 Sulfurtransferase compare
PP_1355 -1.0 -7.1 Muropeptide permease AmpG compare
PP_4447 -1.0 -3.1 conserved protein of unknown function compare
PP_1364 -1.0 -4.4 conserved exported protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source 3-O-methyl-glucose in Pseudomonas putida KT2440

For carbon source 3-O-methyl-glucose across organisms