Experiment set11IT074 for Agrobacterium fabrum C58

Compare to:

LB with Rosmarinic acid 5 mM

200 most important genes:

  gene name fitness t score description  
Atu0163 -3.3 -10.8 tonB protein compare
Atu0161 -3.2 -15.7 biopolymer transport protein compare
Atu0162 -3.0 -8.0 biopolymer transport protein compare
Atu0030 -1.9 -3.0 phosphocarrier protein HPr compare
Atu1030 -1.7 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0421 -1.6 -2.2 ABC transporter, membrane spanning protein compare
Atu1810 -1.5 -2.2 hypothetical protein compare
Atu2286 -1.5 -1.2 hypothetical protein compare
Atu3012 -1.4 -1.3 hypothetical protein compare
Atu3011 -1.4 -3.3 ArsR family transcriptional regulator compare
Atu0319 -1.3 -1.8 ubiquinone biosynthesis protein compare
Atu3469 -1.3 -3.4 phosphoglyceromutase compare
Atu0340 -1.3 -2.9 SAM dependent methyltransferase compare
Atu2057 -1.2 -3.0 DNA helicase II compare
Atu2125 -1.2 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2684 -1.2 -1.9 hypothetical protein compare
Atu0486 -1.2 -4.6 dihydroorotate dehydrogenase compare
Atu2584 -1.2 -5.3 hypothetical protein compare
Atu1354 -1.1 -1.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0912 -1.1 -2.0 Na+/H+ antiporter compare
Atu2582 -1.1 -5.7 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0331 -1.1 -3.4 sigma-54 modulation protein compare
Atu2583 -1.1 -8.0 glycosyltransferase compare
Atu2591 -1.1 -6.9 glucosyltransferase compare
Atu0659 -1.1 -5.0 NTP pyrophosphohydrolase, MutT family compare
Atu0031 -1.1 -1.8 PTS system, IIA component compare
Atu1874 -1.1 -3.1 RecA protein compare
Atu2590 -1.0 -5.5 hypothetical protein compare
Atu2585 -1.0 -5.1 hypothetical protein compare
Atu1566 -1.0 -1.5 hypothetical protein compare
Atu0953 -1.0 -1.0 hypothetical protein compare
Atu3739 -1.0 -3.1 phosphoglycerate kinase compare
Atu1417 -1.0 -5.6 enoyl-CoA hydratase compare
Atu4317 -1.0 -2.8 TetR family transcriptional regulator compare
Atu2577 -1.0 -7.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1470 -1.0 -1.1 Camphor resistance protein compare
Atu4217 -1.0 -1.7 TetR family transcriptional regulator compare
Atu0036 -0.9 -3.4 hypothetical protein compare
Atu0422 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu2648 -0.9 -3.1 hypothetical protein compare
Atu0601 -0.9 -5.6 oxidoreductase compare
Atu0999 -0.9 -5.2 magnesium transport protein compare
Atu1570 -0.9 -1.0 hypothetical protein compare
Atu1163 -0.9 -1.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0602 -0.9 -5.8 glutamine synthetase compare
Atu4149 -0.9 -5.7 UDP-glucose 6-dehydrogenase compare
Atu0895 -0.8 -2.5 ABC transporter, substrate binding protein compare
Atu0434 -0.8 -2.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4099 -0.8 -4.5 hypothetical protein compare
Atu4882 -0.8 -2.3 hypothetical protein compare
Atu3754 -0.8 -4.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu5430 -0.8 -1.4 hypothetical protein compare
Atu8138 -0.8 -1.3 hypothetical protein compare
Atu4773 -0.8 -1.5 two component response regulator compare
Atu2592 -0.8 -3.6 hypothetical protein compare
Atu0977 -0.8 -2.6 serine protease DO-like protease compare
Atu0142 -0.7 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu3014 -0.7 -1.9 hypothetical protein compare
Atu0658 -0.7 -4.5 phosphate permease compare
Atu2207 -0.7 -3.0 two component sensor kinase compare
Atu1225 -0.7 -1.7 hypothetical protein compare
Atu2831 -0.7 -3.9 glucose inhibited division protein A compare
Atu0399 -0.7 -3.1 dihydroorotase compare
Atu1140 -0.7 -3.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3008 -0.7 -0.8 hypothetical protein compare
Atu2245 -0.7 -5.3 Na+/Pi-cotransporter compare
Atu0025 -0.7 -2.0 hypothetical protein compare
Atu4148 -0.7 -3.1 UDP-glucuronic acid epimerase compare
Atu1446 -0.7 -1.5 two component response regulator compare
Atu1308 -0.7 -2.7 aspartate carbamoyl transferase catalytic subunit compare
Atu2555 -0.7 -2.5 L-lysine 2,3-aminomutase compare
Atu3009 -0.7 -0.8 exopolysaccharide production protein compare
Atu3712 -0.7 -0.8 hypothetical protein compare
Atu4879 -0.7 -4.2 hypothetical protein compare
Atu1535 -0.7 -1.2 cytochrome c oxidase, FixQ chain compare
Atu3579 -0.7 -2.7 lactoylglutathione lyase compare
Atu0322 -0.7 -2.8 enoyl CoA hydratase compare
Atu5115 -0.7 -1.4 hypothetical protein compare
Atu3755 -0.7 -2.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2344 -0.7 -1.9 lactoylglutathione lyase compare
Atu1110 -0.6 -1.4 cytosol aminopeptidase compare
Atu3016 -0.6 -2.9 phosphoglyceromutase compare
Atu3013 -0.6 -2.8 hypothetical protein compare
Atu4187 -0.6 -1.0 tRNA-Met compare
Atu1759 -0.6 -4.5 L-serine dehydratase compare
Atu2805 -0.6 -3.5 cobalamin synthesis protein compare
Atu0039 -0.6 -1.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu4405 -0.6 -2.6 periplasmic nitrate reductase NapE compare
Atu0361 -0.6 -1.8 transcriptional regulator compare
Atu2439 -0.6 -1.1 hypothetical protein compare
Atu1845 -0.6 -2.7 phosphoribosylformylglycinamidine synthase I compare
Atu1141 -0.6 -2.8 Phosphoribosylglycinamide synthetase compare
Atu1075 -0.6 -3.4 amidophosphoribosyltransferase compare
Atu0298 -0.6 -3.5 orotidine 5 compare
Atu1513 -0.6 -3.3 ABC excinuclease subunit A compare
Atu4616 -0.6 -1.1 dTDP-4-dehydrorhamnose reductase compare
Atu0971 -0.6 -2.0 two component sensor kinase compare
Atu1904 -0.6 -2.6 transcriptional regulator compare
Atu4888 -0.6 -2.4 hypothetical protein compare
Atu4527 -0.6 -1.3 hypothetical protein compare
Atu3485 -0.6 -3.7 short chain dehydrogenase compare
Atu1364 -0.6 -2.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2442 -0.6 -1.9 hypothetical protein compare
Atu1359 -0.6 -0.8 dnaK deletion suppressor protein compare
Atu0544 -0.6 -1.1 hypothetical protein compare
Atu8202 -0.6 -2.5 hypothetical protein compare
Atu3021 -0.6 -4.0 sugar ABC transporter ATPase compare
Atu2640 -0.6 -2.5 hypothetical protein compare
Atu4880 -0.6 -3.6 AraC family transcriptional regulator compare
Atu3023 -0.5 -3.6 sugar ABC transporter permease compare
Atu4468 -0.5 -3.8 iron transport ABC transporter permease compare
Atu0598 -0.5 -2.9 phosphogluconate dehydratase compare
Atu8144 -0.5 -2.2 hypothetical protein compare
Atu1667 -0.5 -1.3 hypothetical protein compare
Atu1129 -0.5 -3.3 excinuclease ABC chain C compare
Atu2772 -0.5 -2.7 Invasion protein A compare
Atu2787 -0.5 -0.5 hypothetical protein compare
Atu1232 -0.5 -1.2 hypothetical protein compare
Atu1606 -0.5 -2.1 methionine aminopeptidase compare
Atu6114 -0.5 -1.5 hypothetical protein compare
Atu4470 -0.5 -3.7 iron ABC transporter ATPase compare
Atu2832 -0.5 -2.3 tRNA modification GTPase compare
Atu3327 -0.5 -2.5 succinoglycan exopolysaccharide synthesis protein compare
Atu2184 -0.5 -3.2 transcriptional regulator, AsnC family compare
Atu0051 -0.5 -2.7 two component sensor kinase compare
Atu3471 -0.5 -3.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
Atu4582 -0.5 -3.0 ferredoxin compare
Atu4635 -0.5 -3.2 hypothetical protein compare
Atu1679 -0.5 -1.7 peptidyl prolyl cis-trans isomerase compare
Atu4418 -0.5 -1.9 glutaryl-CoA dehydrogenase compare
Atu0375 -0.5 -1.6 small heat shock protein compare
Atu4200 -0.5 -2.1 hypothetical protein compare
Atu2052 -0.5 -3.0 hypothetical protein compare
Atu8162 -0.5 -0.6 hypothetical protein compare
Atu3773 -0.5 -1.6 hypothetical protein compare
Atu2083 -0.5 -2.1 DNA repair protein RecN compare
Atu3963 -0.5 -2.8 GntR family transcriptional regulator compare
Atu0843 -0.5 -4.2 P type cation (metal) transporter, ATPase component compare
Atu2796 -0.5 -2.4 precorrin-4 C11-methyltransferase compare
Atu0795 -0.5 -1.3 hypothetical protein compare
Atu4053 -0.5 -0.9 succinoglycan biosynthesis protein compare
Atu3264 -0.5 -2.2 IclR family transcriptional regulator compare
Atu0029 -0.5 -2.8 S-adenosylhomocysteine hydrolase compare
Atu4540 -0.5 -1.2 protocatechuate 3,4-dioxygenase subunit beta compare
Atu0184 -0.5 -1.5 glucokinase compare
Atu3006 -0.5 -1.5 hypothetical protein compare
Atu1077 -0.5 -1.8 DNA repair protein compare
Atu0153 -0.5 -1.9 transcriptional regulator, Fur family compare
Atu3815 -0.5 -2.8 GntR family transcriptional regulator compare
Atu4890 -0.5 -1.1 IS426 transposase compare
Atu3019 -0.5 -2.9 hypothetical protein compare
Atu2793 -0.5 -1.9 cobyrinic acid a,c-diamide synthase compare
Atu2809 -0.5 -2.9 cobalamin biosynthesis protein compare
Atu1327 -0.5 -1.8 NADH-ubiquinone oxidoreductase compare
Atu2237 -0.5 -2.2 cytochrome c1 compare
Atu4446 -0.4 -3.4 hypothetical protein compare
Atu4884 -0.4 -1.4 hypothetical protein compare
Atu3727 -0.4 -1.7 hypothetical protein compare
Atu0972 -0.4 -2.5 lipA protein compare
Atu0071 -0.4 -2.7 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu2795 -0.4 -2.9 cobalamin biosynthetic protein compare
Atu1573 -0.4 -0.9 hypothetical protein compare
Atu3474 -0.4 -3.1 acyl-CoA dehydrogenase compare
Atu3115 -0.4 -2.0 TetR family transcriptional regulator compare
Atu3289 -0.4 -1.6 thiamine-phosphate pyrophosphorylase compare
Atu2799 -0.4 -1.8 precorrin-6x reductase compare
Atu2238 -0.4 -2.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3730 -0.4 -0.8 hypothetical protein compare
Atu2073 -0.4 -2.3 membrane protein compare
Atu0119 -0.4 -0.8 hypothetical protein compare
Atu1076 -0.4 -1.7 colicin V production protein compare
Atu2804 -0.4 -3.0 cobaltochelatase subunit compare
Atu8150 -0.4 -2.4 hypothetical protein compare
Atu3666 -0.4 -2.3 hypothetical protein compare
Atu0126 -0.4 -2.1 membrane lipoprotein compare
Atu3505 -0.4 -2.4 3-hydroxyisobutyryl-CoA hydrolase compare
Atu4893 -0.4 -1.8 hypothetical protein compare
Atu4876 -0.4 -2.9 oxidoreductase compare
Atu0566 -0.4 -1.2 hypothetical protein compare
Atu0851 -0.4 -1.5 hypothetical protein compare
Atu4068 -0.4 -1.0 sarcosine oxidase delta subunit compare
Atu2034 -0.4 -1.1 transcriptional regulator, ArsR family compare
Atu0040 -0.4 -0.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2068 -0.4 -1.5 hypothetical protein compare
Atu2378 -0.4 -1.5 hypothetical protein compare
Atu3018 -0.4 -1.4 hypothetical protein compare
Atu4469 -0.4 -0.9 iron ABC transporter permease compare
Atu5010 -0.4 -1.1 hypothetical protein compare
Atu1850 -0.4 -1.1 phosphoribosylformylglycinamidine synthetase II compare
Atu3473 -0.4 -2.9 2-oxoisovalerate dehydrogenase subunit alpha compare
Atu4875 -0.4 -2.2 hypothetical protein compare
Atu3521 -0.4 -1.7 permease compare
Atu8184 -0.4 -1.8 hypothetical protein compare
Atu3809 -0.4 -2.0 oxidoreductase compare
Atu3667 -0.4 -1.8 aspartate alpha-decarboxylase compare
Atu2554 -0.4 -0.8 lysyl-tRNA synthetase compare
Atu3010 -0.4 -2.3 hypothetical protein compare
Atu6106 -0.4 -2.0 conserved hypothetical protein compare
Atu3331 -0.4 -1.6 hypothetical protein compare
Atu1638 -0.4 -1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Rosmarinic acid across organisms