Experiment set11IT052 for Pseudomonas fluorescens FW300-N1B4

Compare to:

carbon source Sucrose 0.25mM

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_339 -5.7 -2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_5949 -5.4 -2.0 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_1408 -5.3 -3.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_3785 -5.1 -1.8 FOG: Ankyrin repeat compare
Pf1N1B4_2021 -5.0 -2.1 hypothetical protein compare
Pf1N1B4_5113 -4.9 -4.4 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_1057 -4.9 -2.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_5666 -4.6 -3.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_5115 -4.6 -4.6 sucrose ABC transporter, ATPase component (from data) compare
Pf1N1B4_6 -4.6 -3.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2106 -4.5 -3.9 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_1679 -4.5 -1.9 Membrane-fusion protein compare
Pf1N1B4_3468 -4.5 -2.7 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_15 -4.4 -3.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_4669 -4.4 -2.1 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_350 -4.3 -9.6 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_5665 -4.3 -7.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_3467 -4.2 -3.3 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_875 -4.2 -3.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_4027 -4.2 -2.1 hypothetical protein compare
Pf1N1B4_3501 -4.1 -8.4 BarA sensory histidine kinase (= VarS = GacS) compare
Pf1N1B4_27 -4.0 -5.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_4038 -4.0 -2.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_3451 -3.9 -4.7 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_275 -3.8 -2.7 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_1534 -3.8 -22.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2823 -3.8 -3.0 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_4035 -3.8 -2.6 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2547 -3.7 -3.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2282 -3.7 -10.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1627 -3.7 -6.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1434 -3.6 -9.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2384 -3.6 -12.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_4957 -3.5 -2.5 Transcriptional regulator, TetR family compare
Pf1N1B4_1024 -3.5 -7.8 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf1N1B4_139 -3.5 -3.6 Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V compare
Pf1N1B4_5860 -3.5 -2.9 Two-component response regulator compare
Pf1N1B4_5014 -3.5 -3.0 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_5116 -3.5 -5.9 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) conserved
Pf1N1B4_3518 -3.5 -3.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_322 -3.4 -4.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_2208 -3.4 -7.9 Polyphosphate kinase (EC 2.7.4.1) compare
Pf1N1B4_2112 -3.4 -15.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2337 -3.4 -6.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_12 -3.4 -8.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1307 -3.3 -1.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_742 -3.3 -10.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_4335 -3.3 -2.6 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_4177 -3.3 -1.8 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_327 -3.3 -2.3 hypothetical protein compare
Pf1N1B4_600 -3.3 -6.4 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_2733 -3.3 -2.3 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_2005 -3.2 -2.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_2352 -3.2 -6.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf1N1B4_1 -3.2 -2.5 Colicin V production protein compare
Pf1N1B4_2303 -3.2 -13.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_5769 -3.2 -2.1 Heme d1 biosynthesis protein NirL compare
Pf1N1B4_5111 -3.2 -5.6 Maltoporin (maltose/maltodextrin high-affinity receptor, phage lambda receptor protein) conserved
Pf1N1B4_2338 -3.2 -10.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2695 -3.2 -1.5 Rare lipoprotein A precursor compare
Pf1N1B4_1831 -3.2 -11.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_4176 -3.2 -3.3 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_337 -3.2 -6.3 O-antigen export system permease protein RfbD compare
Pf1N1B4_2880 -3.1 -11.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_2893 -3.1 -9.3 Carbonic anhydrase (EC 4.2.1.1) compare
Pf1N1B4_1782 -3.1 -2.0 hypothetical protein compare
Pf1N1B4_2009 -3.1 -6.6 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2879 -3.1 -6.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_3506 -3.1 -7.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1533 -3.1 -10.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5294 -3.1 -1.6 hypothetical protein compare
Pf1N1B4_5105 -3.1 -2.7 Peptide ABC transporter, ATP-binding protein compare
Pf1N1B4_2493 -3.1 -3.5 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2858 -3.0 -10.7 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2004 -3.0 -2.4 putative membrane protein compare
Pf1N1B4_1315 -3.0 -10.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_1565 -3.0 -4.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_5365 -3.0 -3.5 hypothetical protein compare
Pf1N1B4_1624 -3.0 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_4568 -3.0 -2.2 FIG00793915: hypothetical protein compare
Pf1N1B4_2283 -3.0 -1.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_3241 -3.0 -2.4 hypothetical protein compare
Pf1N1B4_2545 -3.0 -12.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1003 -2.9 -3.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2377 -2.9 -4.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_2042 -2.9 -8.3 Phosphate regulon metal ion transporter containing CBS domains compare
Pf1N1B4_3081 -2.8 -18.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_3363 -2.8 -6.8 Siderophore synthetase superfamily, group A @ Siderophore synthetase large component, acetyltransferase compare
Pf1N1B4_4602 -2.8 -2.8 Transcriptional regulators, LysR family compare
Pf1N1B4_3605 -2.7 -2.3 Flagellar motor switch protein FliG compare
Pf1N1B4_1234 -2.7 -4.7 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_2850 -2.7 -9.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_3011 -2.7 -3.3 Tyrosine recombinase XerD compare
Pf1N1B4_5575 -2.7 -3.3 hypothetical protein compare
Pf1N1B4_2854 -2.7 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_3547 -2.7 -2.0 DNA-binding response regulator compare
Pf1N1B4_4041 -2.7 -3.7 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2885 -2.7 -6.2 Paraquat-inducible protein A compare
Pf1N1B4_2105 -2.7 -2.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_762 -2.7 -7.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_3799 -2.6 -3.3 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Pf1N1B4_2526 -2.6 -12.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_58 -2.6 -5.1 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_1668 -2.6 -4.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_13 -2.6 -3.4 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_4030 -2.6 -3.3 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_335 -2.6 -10.7 Glycosyltransferase compare
Pf1N1B4_4729 -2.6 -2.5 Hemolysin-type calcium-binding region compare
Pf1N1B4_2006 -2.6 -4.0 hypothetical protein compare
Pf1N1B4_847 -2.5 -7.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2145 -2.5 -1.0 Translation initiation inhibitor compare
Pf1N1B4_5509 -2.5 -2.0 hypothetical protein compare
Pf1N1B4_602 -2.5 -2.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_218 -2.5 -5.8 Periplasmic binding protein compare
Pf1N1B4_3356 -2.5 -1.6 Cyclic nucleotide-binding protein compare
Pf1N1B4_1461 -2.4 -3.0 Protein fixF compare
Pf1N1B4_1872 -2.4 -8.8 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_2284 -2.4 -4.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_3720 -2.4 -7.2 Long-chain fatty acid transport protein compare
Pf1N1B4_2609 -2.4 -11.6 Catalase (EC 1.11.1.6) compare
Pf1N1B4_769 -2.4 -5.6 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_4055 -2.4 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_3993 -2.4 -3.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_336 -2.4 -11.2 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_475 -2.4 -3.3 ABC-type multidrug transport system, permease component compare
Pf1N1B4_1869 -2.3 -7.5 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf1N1B4_4065 -2.3 -5.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_611 -2.3 -2.9 CoA transferase, CAIB/BAIF family compare
Pf1N1B4_5817 -2.3 -2.5 Decarboxylase family protein compare
Pf1N1B4_5334 -2.3 -3.3 hypothetical protein compare
Pf1N1B4_5112 -2.3 -2.2 sucrose ABC transporter, substrate-binding component (from data) compare
Pf1N1B4_3582 -2.3 -2.2 C-methyltransferase compare
Pf1N1B4_2549 -2.3 -7.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1617 -2.3 -7.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_4159 -2.3 -3.9 FIG00955149: hypothetical protein compare
Pf1N1B4_1614 -2.3 -2.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_1963 -2.3 -4.2 O-antigen export system permease protein RfbD compare
Pf1N1B4_1610 -2.3 -3.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_2026 -2.3 -3.4 Transcriptional regulator compare
Pf1N1B4_2322 -2.2 -2.0 FIG015547: peptidase, M16 family compare
Pf1N1B4_2359 -2.2 -3.5 Chemotaxis signal transduction protein compare
Pf1N1B4_5979 -2.2 -3.1 Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) compare
Pf1N1B4_5779 -2.2 -2.2 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_1626 -2.2 -5.6 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4042 -2.2 -4.0 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Pf1N1B4_2010 -2.1 -5.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2280 -2.1 -8.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1971 -2.1 -4.0 SAM-dependent methyltransferases compare
Pf1N1B4_5927 -2.1 -14.5 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_2011 -2.1 -7.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2487 -2.1 -7.0 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_909 -2.1 -2.8 Ketosteroid isomerase-related protein compare
Pf1N1B4_3184 -2.1 -2.5 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_2884 -2.1 -4.7 Paraquat-inducible protein A compare
Pf1N1B4_1336 -2.1 -1.4 Putative multicopper oxidases compare
Pf1N1B4_3195 -2.1 -6.4 hydrolase, putative compare
Pf1N1B4_3833 -2.1 -7.9 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_5278 -2.1 -1.4 hypothetical protein compare
Pf1N1B4_1870 -2.1 -2.6 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_5307 -2.1 -2.4 hypothetical protein compare
Pf1N1B4_5279 -2.1 -2.1 hypothetical protein compare
Pf1N1B4_777 -2.1 -7.0 Membrane protein glpM compare
Pf1N1B4_2668 -2.0 -7.7 DedA protein compare
Pf1N1B4_5342 -2.0 -1.2 hypothetical protein compare
Pf1N1B4_5359 -2.0 -3.3 hypothetical protein compare
Pf1N1B4_3795 -2.0 -1.6 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_5898 -2.0 -1.9 hypothetical protein compare
Pf1N1B4_124 -2.0 -2.1 Mechanosensitive ion channel compare
Pf1N1B4_2489 -2.0 -3.0 Biotin synthesis protein BioH compare
Pf1N1B4_4028 -2.0 -3.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1358 -2.0 -3.1 DnaJ-class molecular chaperone CbpA compare
Pf1N1B4_5685 -2.0 -2.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_3074 -1.9 -1.8 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_65 -1.9 -5.6 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf1N1B4_5435 -1.9 -2.1 hypothetical protein compare
Pf1N1B4_958 -1.9 -1.9 Stringent starvation protein B compare
Pf1N1B4_3284 -1.9 -3.6 Antitoxin 1 compare
Pf1N1B4_152 -1.9 -2.5 ABC transporter, permease protein compare
Pf1N1B4_3627 -1.9 -2.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_1611 -1.9 -2.5 Nitrogen regulation protein NR(I) compare
Pf1N1B4_1837 -1.9 -1.5 Osmotically inducible protein C compare
Pf1N1B4_770 -1.9 -1.8 hypothetical protein compare
Pf1N1B4_1554 -1.9 -5.6 predicted FeS cluster maintenance protein (from data) compare
Pf1N1B4_1535 -1.9 -2.4 hypothetical protein compare
Pf1N1B4_131 -1.9 -2.3 hypothetical protein compare
Pf1N1B4_4931 -1.9 -1.6 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_2170 -1.8 -5.1 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf1N1B4_1067 -1.8 -2.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_5650 -1.8 -4.3 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf1N1B4_3038 -1.8 -3.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_4455 -1.8 -1.7 FIG00953528: hypothetical protein compare
Pf1N1B4_2709 -1.8 -2.6 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_4039 -1.8 -3.8 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_2154 -1.8 -2.8 hypothetical protein compare
Pf1N1B4_5224 -1.8 -1.8 tRNA-Arg-CCT compare
Pf1N1B4_2486 -1.8 -1.7 hypothetical protein compare
Pf1N1B4_5306 -1.8 -1.9 hypothetical protein compare
Pf1N1B4_3446 -1.8 -1.7 Putative GTPases (G3E family) compare
Pf1N1B4_4594 -1.8 -1.9 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_3382 -1.8 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Sucrose in Pseudomonas fluorescens FW300-N1B4

For carbon source Sucrose across organisms