Experiment set11H41 for Pseudomonas stutzeri RCH2

Compare to:

LB with Lomefloxacin hydrochloride 0.0001 mM

200 most important genes:

  gene name fitness t score description  
Psest_3647 -4.9 -7.4 Indole-3-glycerol phosphate synthase compare
Psest_3648 -4.5 -10.5 anthranilate phosphoribosyltransferase compare
Psest_0062 -4.2 -14.8 tryptophan synthase, alpha subunit compare
Psest_1492 -4.1 -5.6 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2584 -3.8 -5.1 Phosphoribosylanthranilate isomerase compare
Psest_0063 -3.7 -14.3 tryptophan synthase, beta subunit compare
Psest_1496 -3.7 -1.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_3910 -3.2 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3650 -3.2 -14.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3129 -2.9 -1.6 tyrosine recombinase XerD compare
Psest_4219 -2.9 -2.8 DNA polymerase I compare
Psest_0310 -2.9 -5.0 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3306 -2.7 -6.7 conserved hypothetical integral membrane protein compare
Psest_3226 -2.6 -1.2 Predicted membrane protein compare
Psest_3883 -2.4 -7.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3247 -2.4 -2.1 Uncharacterized membrane protein compare
Psest_3304 -2.2 -5.1 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0311 -2.1 -6.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1154 -2.0 -10.2 RND family efflux transporter, MFP subunit conserved
Psest_2333 -2.0 -1.2 Protein of unknown function (DUF3359). compare
Psest_1284 -2.0 -5.9 exodeoxyribonuclease VII, large subunit conserved
Psest_2872 -2.0 -1.2 protein RecA compare
Psest_1008 -2.0 -1.3 hypothetical protein compare
Psest_4325 -2.0 -2.8 hypothetical protein compare
Psest_3810 -1.9 -1.3 orotate phosphoribosyltransferase compare
Psest_0958 -1.9 -6.0 Oligoketide cyclase/lipid transport protein compare
Psest_4191 -1.9 -3.7 Transcriptional regulator compare
Psest_3303 -1.8 -5.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4098 -1.8 -3.2 Superfamily I DNA and RNA helicases compare
Psest_3767 -1.7 -4.9 tyrosine recombinase XerC compare
Psest_2566 -1.7 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_3305 -1.7 -6.8 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3307 -1.7 -4.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2945 -1.7 -1.4 septum site-determining protein MinC compare
Psest_1752 -1.7 -1.5 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_1153 -1.7 -13.9 Cation/multidrug efflux pump conserved
Psest_3649 -1.7 -6.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1397 -1.6 -4.1 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_4406 -1.6 -2.1 hypothetical protein compare
Psest_3766 -1.6 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_1082 -1.6 -2.2 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3456 -1.6 -1.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_3884 -1.6 -0.9 Signal transduction histidine kinase compare
Psest_0359 -1.6 -2.8 Transcriptional regulators compare
Psest_2651 -1.5 -3.1 DNA topoisomerase I, bacterial compare
Psest_0309 -1.5 -1.2 RND family efflux transporter, MFP subunit compare
Psest_2613 -1.5 -1.5 hypothetical protein compare
Psest_2446 -1.5 -1.9 acetyl-CoA acetyltransferases compare
Psest_1563 -1.5 -2.1 Protein of unknown function (DUF548). compare
Psest_0476 -1.5 -6.8 type I secretion outer membrane protein, TolC family compare
Psest_1905 -1.4 -2.6 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_1293 -1.4 -1.5 VanZ like family. compare
Psest_3070 -1.3 -2.6 3-oxoadipyl-CoA thiolase compare
Psest_2712 -1.3 -3.0 Surface lipoprotein compare
Psest_0279 -1.3 -3.9 methionine biosynthesis protein MetW compare
Psest_1532 -1.3 -2.9 DNA recombination-dependent growth factor C compare
Psest_1417 -1.3 -1.2 hypothetical protein compare
Psest_2646 -1.2 -2.1 SOS regulatory protein LexA compare
Psest_2857 -1.2 -6.5 Rad3-related DNA helicases conserved
Psest_0114 -1.2 -2.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_2114 -1.2 -4.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0020 -1.2 -3.7 K+ transport systems, NAD-binding component compare
Psest_2946 -1.2 -2.2 septum site-determining protein MinD compare
Psest_4363 -1.2 -5.3 ATPases involved in chromosome partitioning compare
Psest_1945 -1.2 -4.0 hypothetical protein compare
Psest_2265 -1.2 -1.7 Outer membrane protein compare
Psest_3377 -1.2 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0516 -1.2 -6.5 D-alanyl-D-alanine carboxypeptidase compare
Psest_0280 -1.1 -7.1 homoserine O-acetyltransferase compare
Psest_4044 -1.1 -1.5 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3367 -1.1 -1.0 translation initation factor SUI1, putative, prokaryotic compare
Psest_2744 -1.1 -1.0 Uncharacterized conserved protein compare
Psest_2285 -1.1 -2.5 ATP-dependent protease La compare
Psest_2321 -1.1 -3.9 methylisocitrate lyase compare
Psest_2001 -1.1 -1.0 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2561 -1.1 -0.8 hypothetical protein compare
Psest_0987 -1.1 -1.9 Predicted periplasmic or secreted lipoprotein compare
Psest_2442 -1.1 -1.3 hypothetical protein compare
Psest_1631 -1.1 -1.2 Uncharacterized conserved small protein compare
Psest_0028 -1.1 -3.7 Coproporphyrinogen III oxidase compare
Psest_3962 -1.1 -1.2 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_2101 -1.1 -1.2 hypothetical protein compare
Psest_4134 -1.1 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_4103 -1.0 -1.4 AraC-type DNA-binding domain-containing proteins compare
Psest_0457 -1.0 -2.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0498 -1.0 -1.1 ribosome small subunit-dependent GTPase A compare
Psest_2711 -1.0 -1.1 PilZ domain. compare
Psest_1031 -1.0 -5.1 Uncharacterized protein conserved in bacteria compare
Psest_1160 -1.0 -2.1 Uncharacterized conserved protein compare
Psest_1804 -1.0 -1.1 Superfamily II DNA and RNA helicases compare
Psest_3535 -1.0 -1.8 hypothetical protein compare
Psest_2720 -1.0 -2.9 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2322 -1.0 -3.3 Transcriptional regulators compare
Psest_4088 -1.0 -2.8 Transcriptional regulators compare
Psest_0115 -1.0 -1.1 Predicted integral membrane protein compare
Psest_0466 -1.0 -2.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2794 -1.0 -3.7 Predicted permease, DMT superfamily compare
Psest_1704 -1.0 -0.9 Dehydrogenases (flavoproteins) compare
Psest_2232 -1.0 -5.8 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_2628 -1.0 -1.7 Flp pilus assembly protein, protease CpaA compare
Psest_1525 -1.0 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_2911 -1.0 -1.3 Protein of unknown function (DUF2945). compare
Psest_3040 -1.0 -4.3 Uncharacterized protein involved in formation of periplasmic nitrate reductase compare
Psest_0442 -1.0 -1.8 ATPases of the AAA+ class compare
Psest_0411 -1.0 -5.0 biotin synthetase compare
Psest_0313 -1.0 -2.9 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1486 -0.9 -2.3 hypothetical protein compare
Psest_0152 -0.9 -2.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_0119 -0.9 -1.8 hypothetical protein compare
Psest_2304 -0.9 -0.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1657 -0.9 -1.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_2809 -0.9 -1.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3092 -0.9 -1.2 ribonuclease III, bacterial compare
Psest_0908 -0.9 -3.6 hypothetical protein compare
Psest_0139 -0.9 -2.4 ABC-type histidine transport system, ATPase component compare
Psest_0154 -0.9 -4.0 Uncharacterized conserved protein compare
Psest_1639 -0.9 -3.8 23S rRNA (uracil-5-)-methyltransferase RumA compare
Psest_2591 -0.9 -1.8 3-isopropylmalate dehydratase, large subunit compare
Psest_3401 -0.9 -3.3 DNA repair protein RadA compare
Psest_3334 -0.9 -2.1 Integral membrane protein CcmA involved in cell shape determination compare
Psest_3882 -0.9 -5.0 Opacity protein and related surface antigens compare
Psest_2468 -0.9 -3.4 uncharacterized domain 1 compare
Psest_2274 -0.9 -2.7 coenzyme PQQ biosynthesis protein A compare
Psest_1877 -0.9 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_0067 -0.8 -1.3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Psest_1562 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_0511 -0.8 -1.1 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_1632 -0.8 -2.1 Predicted permeases compare
Psest_2630 -0.8 -2.1 hypothetical protein compare
Psest_3990 -0.8 -4.4 PAP2 superfamily. compare
Psest_0141 -0.8 -2.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1161 -0.8 -1.0 E3 Ubiquitin ligase. compare
Psest_0082 -0.8 -1.3 Domain of unknown function (DUF892). compare
Psest_1544 -0.8 -4.0 single-stranded-DNA-specific exonuclease RecJ compare
Psest_4247 -0.8 -2.4 Serine/threonine protein phosphatase compare
Psest_1195 -0.8 -1.4 xanthine permease compare
Psest_1489 -0.8 -2.5 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_3960 -0.8 -0.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_3777 -0.8 -1.5 diguanylate cyclase (GGDEF) domain compare
Psest_0066 -0.8 -1.0 Protein of unknown function (DUF3060). compare
Psest_0186 -0.8 -2.5 Protein-disulfide isomerase compare
Psest_2764 -0.8 -0.8 hypothetical protein compare
Psest_1462 -0.8 -2.4 3-oxoacyl-[acyl-carrier-protein] synthase III compare
Psest_3921 -0.8 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0193 -0.8 -0.8 conserved hypothetical protein compare
Psest_0846 -0.8 -2.2 Uncharacterized protein probably involved in high-affinity Fe2+ transport compare
Psest_4108 -0.8 -2.8 seryl-tRNA(sec) selenium transferase compare
Psest_2671 -0.8 -1.6 Transcriptional regulator compare
Psest_0097 -0.8 -1.1 phosphonates metabolism transcriptional regulator PhnF compare
Psest_1322 -0.8 -1.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1872 -0.8 -1.7 selT/selW/selH selenoprotein domain compare
Psest_2067 -0.8 -0.8 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0852 -0.8 -3.1 glucose-6-phosphate 1-dehydrogenase compare
Psest_0153 -0.8 -4.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1921 -0.8 -2.0 Protein of unknown function (DUF2797). compare
Psest_2110 -0.8 -1.8 hypothetical protein compare
Psest_2643 -0.8 -1.3 Beta-glucosidase-related glycosidases compare
Psest_2460 -0.8 -1.2 hypothetical protein compare
Psest_1065 -0.8 -1.6 hypothetical protein compare
Psest_0962 -0.8 -3.9 DNA repair protein RecN compare
Psest_0276 -0.7 -3.5 putative oxygen-independent coproporphyrinogen III oxidase compare
Psest_2810 -0.7 -1.9 5'/3'-nucleotidase SurE compare
Psest_0592 -0.7 -1.5 hypothetical protein compare
Psest_0393 -0.7 -3.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3991 -0.7 -1.0 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_3228 -0.7 -3.8 Zn-dependent protease with chaperone function compare
Psest_1271 -0.7 -3.0 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family compare
Psest_2480 -0.7 -2.4 Methyl-accepting chemotaxis protein compare
Psest_3110 -0.7 -2.3 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2538 -0.7 -0.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1724 -0.7 -1.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2961 -0.7 -2.8 Flagellar basal-body P-ring protein compare
Psest_3361 -0.7 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3860 -0.7 -1.3 Predicted permeases compare
Psest_0292 -0.7 -1.7 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2645 -0.7 -2.8 Transcriptional regulator compare
Psest_2243 -0.7 -0.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1087 -0.7 -0.7 uncharacterized peroxidase-related enzyme compare
Psest_2020 -0.7 -1.2 Uncharacterized protein involved in purine metabolism compare
Psest_3838 -0.7 -1.2 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_3951 -0.7 -2.3 proline iminopeptidase, Neisseria-type subfamily compare
Psest_0814 -0.7 -1.2 MoxR-like ATPases compare
Psest_3296 -0.7 -0.8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_0558 -0.7 -0.5 urease, beta subunit compare
Psest_3168 -0.7 -1.1 Molybdopterin converting factor, large subunit compare
Psest_3558 -0.7 -2.2 Predicted transporter component compare
Psest_1869 -0.7 -3.0 ATP-dependent DNA helicase RecQ compare
Psest_4241 -0.7 -2.3 hypothetical protein compare
Psest_4010 -0.7 -0.6 peroxiredoxin, OsmC subfamily compare
Psest_3476 -0.7 -0.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2772 -0.7 -1.9 MIP family channel proteins compare
Psest_4393 -0.7 -3.3 Capsule polysaccharide export protein compare
Psest_3399 -0.7 -0.5 Uncharacterized protein conserved in bacteria compare
Psest_2308 -0.6 -0.6 Predicted Fe-S protein compare
Psest_0094 -0.6 -1.7 Uncharacterized enzyme of phosphonate metabolism compare
Psest_1317 -0.6 -1.5 phosphonate ABC transporter, permease protein PhnE compare
Psest_0708 -0.6 -0.8 outer membrane assembly lipoprotein YfiO compare
Psest_3047 -0.6 -0.6 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0514 -0.6 -2.1 lytic murein transglycosylase B compare
Psest_0357 -0.6 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare


Specific Phenotypes

For 4 genes in this experiment

For stress Lomefloxacin hydrochloride in Pseudomonas stutzeri RCH2

For stress Lomefloxacin hydrochloride across organisms