Experiment set10IT077 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS05465 +1.8 2.9 amidohydrolase compare
BWI76_RS15920 +1.5 3.2 hypothetical protein compare
BWI76_RS23895 +1.5 2.1 Xaa-Pro aminopeptidase compare
BWI76_RS20380 +1.3 2.2 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS08275 +1.1 2.2 LexA regulated protein compare
BWI76_RS19330 +1.1 1.4 HAD family hydrolase compare
BWI76_RS07725 +1.0 1.4 iron-enterobactin transporter permease compare
BWI76_RS17925 +1.0 5.3 peptidoglycan synthase compare
BWI76_RS11835 +0.9 0.9 putative regulatory protein MarR compare
BWI76_RS05810 +0.9 1.8 hypothetical protein compare
BWI76_RS24900 +0.9 1.9 DeoR family transcriptional regulator compare
BWI76_RS23520 +0.8 1.9 hypothetical protein compare
BWI76_RS21675 +0.8 1.2 hypothetical protein compare
BWI76_RS21505 +0.8 1.5 hypothetical protein compare
BWI76_RS24925 +0.8 1.8 DnaA initiator-associating protein DiaA compare
BWI76_RS11700 +0.8 1.6 hypothetical protein compare
BWI76_RS18610 +0.8 2.9 transcriptional regulator LysR compare
BWI76_RS14835 +0.8 1.4 hypothetical protein compare
BWI76_RS08310 +0.8 2.1 potassium-transporting ATPase subunit C compare
BWI76_RS11710 +0.8 4.2 nucleotide excision repair endonuclease compare
BWI76_RS25870 +0.7 1.7 elongation factor Tu compare
BWI76_RS11285 +0.7 1.5 transcriptional regulator compare
BWI76_RS04655 +0.7 2.1 shikimate dehydrogenase compare
BWI76_RS08345 +0.7 1.2 Nif3-like dinuclear metal center protein compare
BWI76_RS04900 +0.7 2.5 DUF2950 domain-containing protein compare
BWI76_RS06335 +0.7 1.9 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS00640 +0.7 1.7 L-rhamnose mutarotase compare
BWI76_RS13240 +0.7 1.2 hypothetical protein compare
BWI76_RS05570 +0.7 1.2 hypothetical protein compare
BWI76_RS16315 +0.7 1.5 SirA-like protein compare
BWI76_RS02745 +0.7 1.4 hypothetical protein compare
BWI76_RS16360 +0.7 1.3 electron transport complex subunit RsxB compare
BWI76_RS17675 +0.7 1.7 hypothetical protein compare
BWI76_RS06320 +0.7 2.5 Xaa-Pro aminopeptidase compare
BWI76_RS13215 +0.7 1.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS17155 +0.7 0.8 hypothetical protein compare
BWI76_RS06340 +0.7 0.9 hypothetical protein compare
BWI76_RS24770 +0.7 2.3 hypothetical protein compare
BWI76_RS00140 +0.7 1.0 phosphate transport system regulator PhoU compare
BWI76_RS11260 +0.6 1.7 hypothetical protein compare
BWI76_RS11060 +0.6 1.4 septum formation inhibitor Maf compare
BWI76_RS13805 +0.6 2.0 inorganic diphosphatase compare
BWI76_RS12520 +0.6 1.8 hypothetical protein compare
BWI76_RS10530 +0.6 1.7 GntR family transcriptional regulator with compare
BWI76_RS27520 +0.6 2.4 sodium/glutamate symporter compare
BWI76_RS01330 +0.6 2.1 twin-arginine translocase subunit TatC compare
BWI76_RS20805 +0.6 1.7 phosphate acetyltransferase compare
BWI76_RS20385 +0.6 2.3 aspartate-semialdehyde dehydrogenase compare
BWI76_RS18355 +0.6 2.6 amino acid ABC transporter permease compare
BWI76_RS06130 +0.6 1.0 extensin family protein compare
BWI76_RS12150 +0.6 2.3 DNA damage-inducible protein I compare
BWI76_RS27940 +0.6 2.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS18745 +0.6 2.1 adenosylhomocysteinase compare
BWI76_RS11010 +0.6 1.8 30S ribosomal protein S5 alanine N-acetyltransferase compare
BWI76_RS03595 +0.6 1.2 ethanolamine utilization protein EutM compare
BWI76_RS00885 +0.6 2.6 tRNA (uridine(54)-C5)-methyltransferase TrmA compare
BWI76_RS14965 +0.6 1.9 AraC family transcriptional regulator compare
BWI76_RS26095 +0.6 1.0 shikimate kinase compare
BWI76_RS06735 +0.6 1.5 50S ribosomal protein L31 compare
BWI76_RS08805 +0.6 2.4 gluconeogenesis factor compare
BWI76_RS09305 +0.6 1.0 hypothetical protein compare
BWI76_RS14735 +0.6 2.4 type 11 methyltransferase compare
BWI76_RS15970 +0.6 2.2 carboxypeptidase M32 compare
BWI76_RS09255 +0.6 1.2 hypothetical protein compare
BWI76_RS16935 +0.6 1.0 shikimate dehydrogenase compare
BWI76_RS01565 +0.6 1.2 NADH pyrophosphatase compare
BWI76_RS10400 +0.6 1.5 hypothetical protein compare
BWI76_RS02090 +0.5 1.8 membrane protein compare
BWI76_RS26130 +0.5 1.7 ADP compounds hydrolase NudE compare
BWI76_RS13490 +0.5 1.5 pyrimidine-specific ribonucleoside hydrolase RihA compare
BWI76_RS16510 +0.5 2.2 transcriptional repressor PurR compare
BWI76_RS06680 +0.5 0.9 hypothetical protein compare
BWI76_RS01935 +0.5 1.4 thiamin phosphate synthase compare
BWI76_RS26290 +0.5 2.6 glycerol-3-phosphate ABC transporter ATP-binding protein compare
BWI76_RS10900 +0.5 2.2 putative oxidoreductase compare
BWI76_RS07845 +0.5 2.0 LacI family transcriptional regulator compare
BWI76_RS06475 +0.5 1.3 protoheme IX farnesyltransferase compare
BWI76_RS20930 +0.5 1.1 arsenate reductase (glutaredoxin) compare
BWI76_RS24055 +0.5 2.5 MFS transporter compare
BWI76_RS10825 +0.5 2.8 deferrochelatase/peroxidase EfeB compare
BWI76_RS16805 +0.5 1.1 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS09730 +0.5 1.1 pyruvate formate lyase 1-activating protein compare
BWI76_RS05655 +0.5 1.5 hypothetical protein compare
BWI76_RS14540 +0.5 2.3 yersiniabactin biosynthetic protein YbtU compare
BWI76_RS17230 +0.5 2.0 peptide ABC transporter permease compare
BWI76_RS02200 +0.5 2.0 phosphonate C-P lyase system protein PhnL compare
BWI76_RS06745 +0.5 1.4 N-acetyltransferase GCN5 compare
BWI76_RS19100 +0.5 2.1 putative acid phosphatase compare
BWI76_RS19145 +0.5 1.3 formate dehydrogenase cytochrome b556 subunit compare
BWI76_RS19325 +0.5 1.2 mandelate racemase compare
BWI76_RS17795 +0.5 1.4 ribonuclease D compare
BWI76_RS11230 +0.5 2.5 NAD-dependent deacylase compare
BWI76_RS07730 +0.5 1.0 iron-enterobactin transporter membrane protein compare
BWI76_RS16335 +0.5 1.2 division septum protein Blr compare
BWI76_RS16275 +0.5 1.8 fumarate hydratase FumA compare
BWI76_RS07165 +0.5 1.5 hypothetical protein compare
BWI76_RS22855 +0.5 1.8 hypothetical protein compare
BWI76_RS11815 +0.5 1.3 hypothetical protein compare
BWI76_RS19695 +0.5 1.5 membrane protein compare
BWI76_RS09820 +0.5 1.9 hypothetical protein compare
BWI76_RS09065 +0.5 1.4 sugar phosphatase SupH compare
BWI76_RS16765 +0.5 2.5 spermidine/putrescine ABC transporter permease compare
BWI76_RS24220 +0.5 2.5 short chain dehydrogenase compare
BWI76_RS23055 +0.5 2.0 cobalamin biosynthesis protein CbiG compare
BWI76_RS12825 +0.5 1.5 hypothetical protein compare
BWI76_RS24820 +0.5 1.9 glycerate 2-kinase compare
BWI76_RS23535 +0.5 1.5 hypothetical protein compare
BWI76_RS05555 +0.5 0.7 Crl family RNA polymerase assembly factor compare
BWI76_RS03175 +0.5 2.2 hypothetical protein compare
BWI76_RS18410 +0.5 1.4 drug/metabolite exporter YedA compare
BWI76_RS24720 +0.5 1.4 hypothetical protein compare
BWI76_RS05785 +0.5 1.5 CI repressor compare
BWI76_RS17530 +0.5 1.3 hypothetical protein compare
BWI76_RS05510 +0.5 2.4 NADH:ubiquinone reductase (Na(+)-transporting) subunit E compare
BWI76_RS18870 +0.5 0.8 protein NifZ compare
BWI76_RS09275 +0.5 1.9 major capsid protein compare
BWI76_RS12465 +0.5 0.8 phage shock protein D compare
BWI76_RS09630 +0.5 1.3 leucyl/phenylalanyl-tRNA--protein transferase compare
BWI76_RS16140 +0.5 1.4 3-oxoadipate CoA-transferase compare
BWI76_RS16115 +0.5 2.2 fumarate hydratase compare
BWI76_RS02920 +0.5 1.6 addiction module toxin RelE compare
BWI76_RS13355 +0.5 2.0 AraC family transcriptional regulator compare
BWI76_RS27830 +0.5 2.2 type I toxin-antitoxin system toxin TisB compare
BWI76_RS08215 +0.5 1.4 glucosamine-6-phosphate deaminase compare
BWI76_RS20230 +0.5 0.8 hypothetical protein compare
BWI76_RS12600 +0.5 2.3 MFS transporter compare
BWI76_RS25195 +0.5 2.4 maltose metabolism regulator compare
BWI76_RS14240 +0.5 1.8 thiol reductase thioredoxin compare
BWI76_RS02855 +0.5 0.8 cytochrome B562 compare
BWI76_RS18055 +0.5 1.5 copper resistance protein D compare
BWI76_RS14375 +0.5 1.5 hypothetical protein compare
BWI76_RS19795 +0.5 2.7 microcin C ABC transporter ATP-binding protein YejF compare
BWI76_RS15230 +0.4 1.5 4-hydroxythreonine-4-phosphate dehydrogenase compare
BWI76_RS25545 +0.4 1.9 hypothetical protein compare
BWI76_RS20880 +0.4 1.1 esterase compare
BWI76_RS21940 +0.4 1.2 SDR family oxidoreductase compare
BWI76_RS15940 +0.4 1.2 DMSO reductase maturation protein DsmD compare
BWI76_RS13480 +0.4 1.0 XRE family transcriptional regulator compare
BWI76_RS01325 +0.4 1.5 twin-arginine translocase subunit TatB compare
BWI76_RS08350 +0.4 2.0 carboxylase compare
BWI76_RS16775 +0.4 2.2 malate/lactate/ureidoglycolate dehydrogenase compare
BWI76_RS10650 +0.4 1.3 PTS fructose-like transporter subunit EIIB compare
BWI76_RS00415 +0.4 2.0 glucose-1-phosphatase compare
BWI76_RS00300 +0.4 3.1 MFS transporter compare
BWI76_RS02260 +0.4 2.1 DNA-binding protein compare
BWI76_RS10790 +0.4 1.9 hypothetical protein compare
BWI76_RS15760 +0.4 0.9 hypothetical protein compare
BWI76_RS25485 +0.4 0.8 septum formation protein Maf compare
BWI76_RS21715 +0.4 1.2 transcriptional regulator compare
BWI76_RS08380 +0.4 0.5 endonuclease VIII compare
BWI76_RS20785 +0.4 0.7 ethanolamine utilization protein EutJ compare
BWI76_RS02690 +0.4 1.2 hypothetical protein compare
BWI76_RS11460 +0.4 1.5 DUF441 family protein compare
BWI76_RS14610 +0.4 2.1 putative hydrolase compare
BWI76_RS15045 +0.4 1.8 LysR family transcriptional regulator compare
BWI76_RS05700 +0.4 1.8 coenzyme F420-dependent NADP oxidoreductase compare
BWI76_RS06330 +0.4 1.8 DNA-binding transcriptional regulator compare
BWI76_RS22280 +0.4 2.2 formate dehydrogenase-H ferredoxin subunit compare
BWI76_RS11235 +0.4 0.7 hypothetical protein compare
BWI76_RS26285 +0.4 1.7 glycerophosphodiester phosphodiesterase compare
BWI76_RS10765 +0.4 2.0 pyrimidine utilization protein D compare
BWI76_RS09825 +0.4 2.2 envelope biogenesis factor ElyC compare
BWI76_RS09130 +0.4 1.5 biofilm formation regulatory protein BssR compare
BWI76_RS06800 +0.4 0.7 DUF2496 domain-containing protein compare
BWI76_RS00880 +0.4 2.0 membrane protein compare
BWI76_RS19775 +0.4 1.2 phage resistance protein compare
BWI76_RS18605 +0.4 0.6 oxidoreductase molybdopterin-binding protein compare
BWI76_RS15890 +0.4 2.2 Zn-dependent oxidoreductase compare
BWI76_RS10300 +0.4 2.6 MFS transporter compare
BWI76_RS17645 +0.4 1.4 hypothetical protein compare
BWI76_RS14020 +0.4 2.1 aspartate aminotransferase family protein compare
BWI76_RS00710 +0.4 1.0 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS12885 +0.4 1.6 hypothetical protein compare
BWI76_RS12470 +0.4 0.9 thiosulfate sulfurtransferase PspE compare
BWI76_RS06425 +0.4 2.6 MFS transporter compare
BWI76_RS23670 +0.4 1.9 alkaline phosphatase compare
BWI76_RS10380 +0.4 2.1 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS11520 +0.4 0.8 hypothetical protein compare
BWI76_RS10580 +0.4 1.1 amino acid ABC transporter permease compare
BWI76_RS13250 +0.4 0.7 cytochrome b561 compare
BWI76_RS02040 +0.4 2.4 aryl-alcohol dehydrogenase compare
BWI76_RS06430 +0.4 2.0 hypothetical protein compare
BWI76_RS07350 +0.4 1.3 alcohol dehydrogenase compare
BWI76_RS27395 +0.4 1.5 hypothetical protein compare
BWI76_RS18195 +0.4 1.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
BWI76_RS27445 +0.4 1.5 fructose-bisphosphatase class II compare
BWI76_RS24390 +0.4 0.7 hypothetical protein compare
BWI76_RS05885 +0.4 1.2 anion permease compare
BWI76_RS16070 +0.4 2.1 N-acetylmuramic acid 6-phosphate etherase compare
BWI76_RS01095 +0.4 1.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS13930 +0.4 1.7 putative LysR-family transcriptional regulator compare
BWI76_RS18305 +0.4 0.9 dihydrodipicolinate synthase family protein compare
BWI76_RS12965 +0.4 1.8 LysR family transcriptional regulator compare
BWI76_RS09315 +0.4 0.5 hypothetical protein compare
BWI76_RS15180 +0.4 1.2 altronate oxidoreductase compare
BWI76_RS18755 +0.4 0.6 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS07450 +0.4 1.4 transcriptional regulator compare
BWI76_RS18130 +0.4 0.9 zinc ABC transporter substrate-binding protein compare
BWI76_RS19495 +0.4 0.6 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS14930 +0.4 1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms