Experiment set10IT049 for Pseudomonas putida KT2440

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
PP_4679 -6.6 -4.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -6.2 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -6.1 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.9 -5.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1988 -5.9 -10.6 3-isopropylmalate dehydrogenase compare
PP_5015 -5.8 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4678 -5.8 -17.4 Ketol-acid reductoisomerase compare
PP_1986 -5.7 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_5098 -5.5 -10.5 methionine biosynthesis protein MetW compare
PP_1995 -5.4 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5347 -5.3 -14.6 pyruvate carboxylase subunit A compare
PP_0795 -5.3 -12.8 fructose PTS permease - IIBC component conserved
PP_5717 -5.2 -4.5 conserved protein of unknown function compare
PP_1088 -5.0 -12.0 Argininosuccinate synthase compare
PP_4680 -4.9 -14.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -4.9 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2433 -4.8 -3.9 conserved protein of unknown function compare
PP_1985 -4.7 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_0967 -4.7 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -4.6 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0083 -4.6 -8.2 tryptophan synthase beta chain compare
PP_5346 -4.6 -8.8 pyruvate carboxylase subunit B compare
PP_0966 -4.5 -11.0 Histidinol dehydrogenase compare
PP_5014 -4.4 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0691 -4.2 -3.9 Glutamate 5-kinase compare
PP_2168 -4.2 -11.6 Transaldolase compare
PP_5097 -4.2 -12.8 homoserine O-acetyltransferase compare
PP_3999 -4.1 -8.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0417 -4.0 -15.5 Anthranilate synthase component 1 compare
PP_4909 -4.0 -7.1 phosphoserine phosphatase compare
PP_0793 -4.0 -9.7 Phosphotransferase system, fructose-specific EI/HPr/EIIA components conserved
PP_0082 -4.0 -7.7 tryptophan synthase alpha chain compare
PP_0422 -3.9 -6.6 Indole-3-glycerol phosphate synthase compare
PP_2001 -3.9 -8.6 O-succinylhomoserine sulfhydrylase compare
PP_0184 -3.8 -8.1 Argininosuccinate lyase compare
PP_0421 -3.7 -6.0 Anthranilate phosphoribosyltransferase compare
PP_3365 -3.7 -1.7 Acetolactate synthase compare
PP_4696 -3.7 -6.4 Nitrogen regulation protein NR(I) compare
PP_0787 -3.7 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2327 -3.7 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4799 -3.6 -2.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0289 -3.5 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_5128 -3.5 -6.3 Dihydroxy-acid dehydratase compare
PP_1079 -3.3 -4.4 Ornithine carbamoyltransferase compare
PP_0965 -3.3 -6.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0794 -3.3 -6.4 1-phosphofructokinase monomer compare
PP_5185 -3.3 -6.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2371 -3.2 -5.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1022 -3.2 -5.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1231 -3.1 -6.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1654 -3.0 -4.4 cysteine synthase B compare
PP_0888 -2.9 -2.8 Photosynthetic apparatus regulatory protein RegA compare
PP_0339 -2.9 -3.4 Pyruvate dehydrogenase E1 component compare
PP_5348 -2.8 -6.1 Transcriptional regulator, LysR family compare
PP_4724 -2.8 -6.0 Carbamoyl-phosphate synthase small chain compare
PP_4700 -2.8 -3.7 pantothenate synthetase compare
PP_2345 -2.7 -3.6 conserved exported protein of unknown function compare
PP_5289 -2.7 -3.2 Acetylglutamate kinase compare
PP_2868 -2.7 -6.8 Transcriptional regulator, Cro/CI family compare
PP_2370 -2.6 -4.0 conserved protein of unknown function compare
PP_4874 -2.6 -1.6 50S ribosomal protein L9 compare
PP_4723 -2.6 -9.1 Carbamoyl-phosphate synthase large chain compare
PP_0735 -2.5 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_1025 -2.5 -7.8 2-isopropylmalate synthase compare
PP_5017 -2.4 -1.9 Sec-independent protein translocase protein TatB compare
PP_4120 -2.4 -4.4 NADH-quinone oxidoreductase subunit B compare
PP_3649 -2.3 -4.7 Transcriptional regulator, GntR family compare
PP_5155 -2.3 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4131 -2.3 -6.5 NADH-quinone oxidoreductase subunit N compare
PP_1362 -2.2 -4.4 pyruvate kinase II compare
PP_4779 -2.0 -11.4 AMP nucleosidase compare
PP_4126 -2.0 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_4122 -2.0 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4999 -2.0 -1.9 dihydroorotase-like protein compare
PP_0775 -1.9 -2.5 conserved protein of unknown function compare
PP_0420 -1.9 -6.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0719 -1.9 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4130 -1.8 -4.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3392 -1.8 -1.3 conserved protein of unknown function compare
PP_0513 -1.7 -2.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2631 -1.7 -1.5 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0291 -1.7 -2.5 conserved protein of unknown function compare
PP_0185 -1.6 -5.5 Positive alginate biosynthesis regulatory protein compare
PP_3946 -1.6 -1.3 HTH-type transcriptional repressor NicR compare
PP_1328 -1.6 -1.8 Protein MraZ compare
PP_3603 -1.6 -4.5 Transcriptional regulator, GntR family compare
PP_4895 -1.5 -3.2 tRNA dimethylallyltransferase compare
PP_1633 -1.5 -1.8 conserved exported protein of unknown function compare
PP_0362 -1.5 -6.9 Biotin synthase compare
PP_1734 -1.5 -2.5 Probable septum site-determining protein MinC compare
PP_4271 -1.5 -1.1 conserved protein of unknown function compare
PP_4329 -1.5 -2.1 FlhB domain protein compare
PP_1664 -1.5 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_1428 -1.5 -1.0 Sigma factor AlgU negative regulatory protein compare
PP_4238 -1.4 -1.8 conserved protein of unknown function compare
PP_4695 -1.4 -5.7 Sensory box histidine kinase compare
PP_5350 -1.4 -2.8 Transcriptional regulator, RpiR family compare
PP_5528 -1.4 -1.9 conserved protein of unknown function compare
PP_5095 -1.3 -1.0 pyrroline-5-carboxylate reductase compare
PP_2429 -1.3 -2.4 putative Membrane protein compare
PP_2718 -1.3 -1.9 arsenic resistance transcriptional regulator compare
PP_4121 -1.3 -3.5 NADH-quinone oxidoreductase subunit C/D compare
PP_4964 -1.3 -3.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2336 -1.3 -3.0 aconitate hydratase 1 compare
PP_0150 -1.2 -2.1 conserved exported protein of unknown function compare
PP_4701 -1.2 -0.9 glucose-6-phosphate isomerase compare
PP_2032 -1.2 -3.4 putative ATPase compare
PP_4129 -1.2 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_t12 -1.2 -1.0 tRNA-Thr compare
PP_2530 -1.2 -2.0 conserved protein of unknown function compare
PP_5227 -1.2 -4.8 diaminopimelate decarboxylase compare
PP_0035 -1.2 -2.7 putative bactoprenol-linked glycose transferase compare
PP_4699 -1.2 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0566 -1.1 -0.9 translation-related factor compare
PP_4503 -1.1 -3.4 DNA-binding response regulator compare
PP_2348 -1.1 -2.9 Sensor histidine kinase compare
PP_1629 -1.1 -3.5 Protein RecA compare
PP_4693 -1.1 -3.7 RNA polymerase-binding transcription factor DksA compare
PP_1455 -1.1 -3.4 conserved protein of unknown function compare
PP_1114 -1.1 -2.5 SEC-C domain protein compare
PP_1009 -1.1 -3.9 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4546 -1.1 -3.0 ATP-dependent helicase HrpA compare
PP_5495 -1.0 -1.9 protein of unknown function compare
PP_5748 -1.0 -2.1 cytochrome c heme lyase subunit compare
PP_5675 -1.0 -2.0 conserved protein of unknown function compare
PP_3790 -1.0 -5.2 diaminopimelate epimerase compare
PP_5678 -1.0 -3.6 protein of unknown function compare
PP_1860 -1.0 -3.2 Organic hydroperoxide resistance transcriptional regulator compare
PP_5159 -1.0 -2.7 conserved protein of unknown function compare
PP_2793 -1.0 -1.2 Acyl-CoA dehydrogenase family protein compare
PP_4993 -1.0 -2.3 Glutathione synthetase compare
PP_4828 -1.0 -1.0 Precorrin-8X methylmutase compare
PP_2559 -1.0 -3.0 Metalloprotease secretion protein compare
PP_4342 -1.0 -1.4 flagellar synthesis regulator, putative ATPase compare
PP_1764 -1.0 -4.7 Phosphoglycolate phosphatase 2 compare
PP_5022 -1.0 -1.2 Glutamine transport ATP-binding protein GlnQ compare
PP_1099 -1.0 -1.1 Cold shock protein CapB compare
PP_4317 -0.9 -2.6 conserved protein of unknown function compare
PP_2624 -0.9 -3.0 conserved protein of unknown function compare
PP_5293 -0.9 -3.0 conserved protein of unknown function compare
PP_2181 -0.9 -3.3 Transcriptional regulator, Cro/CI family compare
PP_1731 -0.9 -2.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2575 -0.9 -1.4 conserved exported protein of unknown function compare
PP_4060 -0.9 -6.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1489 -0.9 -2.8 CheW domain protein compare
PP_3409 -0.9 -1.9 putative Cobalamin biosynthesis protein cobE compare
PP_2456 -0.9 -3.0 D-ribose ABC transporter - permease subunit compare
PP_0190 -0.9 -2.6 putative disulfide bond formation protein B compare
PP_0855 -0.9 -1.6 conserved protein of unknown function compare
PP_2360 -0.9 -2.7 putative type 1 pili subunit CsuA/B protein compare
PP_4263 -0.9 -2.6 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1468 -0.9 -1.5 Tyrosine recombinase XerD compare
PP_1082 -0.9 -3.9 bacterioferritin compare
PP_1426 -0.9 -5.0 L-aspartate oxidase compare
PP_5054 -0.9 -1.4 glutaredoxin 3 compare
PP_3662 -0.9 -3.6 conserved protein of unknown function compare
PP_4124 -0.9 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_5393 -0.9 -0.9 putative metal-binding chaperone compare
PP_2899 -0.8 -1.3 conserved exported protein of unknown function compare
PP_0832 -0.8 -2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0240 -0.8 -1.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4102 -0.8 -3.2 conserved protein of unknown function compare
PP_4532 -0.8 -1.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5202 -0.8 -1.2 putative cell division protein compare
PP_4984 -0.8 -4.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2124 -0.8 -2.4 putative Glycosyl transferase compare
PP_3312 -0.8 -1.4 putative Heat shock protein compare
PP_5007 -0.8 -1.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5473 -0.8 -1.4 putative transcriptional regulator, LuxR family compare
PP_2030 -0.8 -2.2 conserved protein of unknown function compare
PP_3411 -0.8 -0.9 conserved protein of unknown function compare
PP_2378 -0.8 -1.0 Fe/S biogenesis protein NfuA compare
PP_4340 -0.8 -1.9 response regulator for chemotactic signal transduction compare
PP_4180 -0.8 -2.1 conserved protein of unknown function compare
PP_1017 -0.8 -2.3 mannose/glucose ABC transporter, permease protein compare
PP_0414 -0.8 -1.7 Polyamine ABC transporter, permease protein compare
PP_2439 -0.8 -1.9 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_3346 -0.8 -1.6 Nickel transporter ATP-binding protein compare
PP_1826 -0.8 -1.5 Hydrolase, isochorismatase family compare
PP_3906 -0.8 -2.0 conserved protein of unknown function compare
PP_2029 -0.8 -1.6 von Willebrand factor type A domain protein compare
PP_4480 -0.8 -3.2 arginine N-succinyltransferase, subunit alpha compare
PP_0261 -0.8 -2.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0957 -0.7 -1.2 D-arabinose 5-phosphate isomerase compare
PP_4013 -0.7 -2.6 MutT/nudix family protein compare
PP_0980 -0.7 -2.5 Probable cytosol aminopeptidase compare
PP_5639 -0.7 -3.8 conserved exported protein of unknown function compare
PP_2132 -0.7 -1.6 Universal stress protein compare
PP_2107 -0.7 -0.9 conserved protein of unknown function compare
PP_4988 -0.7 -2.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3866 -0.7 -1.6 conserved protein of unknown function compare
PP_2472 -0.7 -2.1 putative transcriptional regulator, MerR family compare
PP_3002 -0.7 -2.0 shikimate dehydrogenase-related enzyme compare
PP_5533 -0.7 -0.9 conserved protein of unknown function compare
PP_1748 -0.7 -1.7 conserved protein of unknown function compare
PP_2159 -0.7 -1.7 Copper-binding protein, plastocyanin/azurin family compare
PP_3040 -0.7 -1.1 Pyocin R2_PP, holin compare
PP_1055 -0.7 -0.8 Type II secretion pathway protein GspN compare
PP_2210 -0.7 -2.3 LysR family transcriptional regulator compare
PP_3117 -0.7 -1.2 putative protein involved in error-prone processing of DNA lesions compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Fructose in Pseudomonas putida KT2440

For carbon source D-Fructose across organisms