Experiment set10IT039 for Agrobacterium fabrum C58

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu0017 -5.9 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1750 -5.8 -7.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu0679 -5.7 -7.8 ATP phosphoribosyltransferase compare
Atu0678 -5.5 -7.6 histidyl-tRNA synthetase compare
Atu0099 -5.5 -15.8 prephenate dehydratase compare
Atu0537 -5.4 -8.2 histidinol dehydrogenase compare
Atu3739 -5.3 -3.1 phosphoglycerate kinase compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu1688 -5.0 -10.2 indole-3-glycerol-phosphate synthase compare
Atu0432 -5.0 -12.4 O-succinylhomoserine sulfhydrylase compare
Atu0038 -5.0 -7.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2289 -5.0 -21.3 anthranilate synthase component I and II compare
Atu3706 -5.0 -11.0 D-3-phosphoglycerate dehydrogenase compare
Atu0043 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu4505 -4.8 -11.5 LacI family transcriptional regulator compare
Atu0035 -4.8 -11.5 phosphoenolpyruvate carboxykinase compare
Atu3740 -4.7 -13.6 fructose bisphosphate aldolase compare
Atu2709 -4.7 -22.3 3-isopropylmalate dehydratase, large subunit compare
Atu3469 -4.7 -3.2 phosphoglyceromutase compare
Atu1687 -4.6 -10.5 anthranilate phosphoribosyltransferase compare
Atu1850 -4.6 -5.9 phosphoribosylformylglycinamidine synthetase II compare
Atu3783 -4.6 -17.9 glutamate synthase subunit beta compare
Atu2791 -4.6 -9.0 3-isopropylmalate dehydrogenase compare
Atu0400 -4.6 -7.0 orotate phosphoribosyltransferase compare
Atu1205 -4.5 -15.7 threonine dehydratase compare
Atu4538 -4.5 -16.1 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu1588 -4.5 -12.2 homoserine dehydrogenase compare
Atu1620 -4.5 -14.6 triosephosphate isomerase compare
Atu1075 -4.4 -8.8 amidophosphoribosyltransferase compare
Atu2264 -4.3 -15.7 2-isopropylmalate synthase compare
Atu4549 -4.3 -12.8 beta-ketoadipyl CoA thiolase conserved
Atu2036 -4.3 -16.1 acetolactate synthase III, large subunit compare
Atu2747 -4.2 -15.0 hypothetical protein compare
Atu3885 -4.1 -10.4 inositol monophosphatase compare
Atu0486 -4.0 -8.5 dihydroorotate dehydrogenase compare
Atu3754 -4.0 -8.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3784 -4.0 -26.7 glutamate synthase large subunit compare
Atu0399 -3.9 -10.3 dihydroorotase compare
Atu0723 -3.9 -2.7 FAD dependent oxidoreductase compare
Atu2718 -3.9 -9.2 homoserine O-succinyltransferase compare
Atu3755 -3.8 -7.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2040 -3.8 -8.0 phosphoserine phosphatase compare
Atu0647 -3.8 -10.0 phosphoribosylamine--glycine ligase compare
Atu1308 -3.8 -7.0 aspartate carbamoyl transferase catalytic subunit compare
Atu0536 -3.7 -9.8 hypothetical protein compare
Atu1307 -3.7 -11.8 dihydroorotase compare
Atu0298 -3.7 -9.1 orotidine 5 compare
Atu1141 -3.6 -10.5 Phosphoribosylglycinamide synthetase compare
Atu1845 -3.6 -4.6 phosphoribosylformylglycinamidine synthase I compare
Atu4548 -3.6 -16.1 3-oxoadipate CoA-transferase subunit B conserved
Atu1844 -3.6 -5.0 Phosphoribosylformylglycinamidine synthetase compare
Atu1030 -3.5 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1140 -3.5 -7.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1359 -3.5 -2.1 dnaK deletion suppressor protein compare
Atu3707 -3.4 -3.9 phosphoserine aminotransferase compare
Atu3482 -3.4 -8.4 pantoate--beta-alanine ligase compare
Atu2790 -3.4 -4.1 3-isopropylmalate dehydratase, small subunit compare
Atu0803 -3.4 -18.3 pyruvate,orthophosphate dikinase compare
Atu4541 -3.3 -7.6 carboxymuconolactone decarboxylase compare
Atu0040 -3.3 -1.9 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2115 -3.2 -10.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1686 -3.2 -19.3 peptidyl-prolyl cis-trans isomerse D compare
Atu4547 -3.2 -14.7 3-oxoadipate CoA-transferase subunit A conserved
Atu4542 -2.9 -11.2 beta-ketoadipate enol-lactone hydrolase conserved
Atu2015 -2.8 -12.5 aminotransferase compare
Atu1589 -2.7 -6.4 aminotransferase, class I compare
Atu2650 -2.7 -14.9 glycerol-3-phosphate dehydrogenase compare
Atu3731 -2.6 -6.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu3763 -2.6 -2.5 hypothetical protein compare
Atu3483 -2.6 -8.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0030 -2.4 -2.7 phosphocarrier protein HPr compare
Atu1685 -2.3 -1.9 hypothetical protein compare
Atu1455 -2.1 -4.4 hypothetical protein compare
Atu1454 -2.0 -11.0 siroheme synthase compare
Atu2020 -2.0 -3.7 transcriptional regulator, TetR family compare
Atu4539 -1.8 -7.9 protocatechuate 3,4-dioxygenase alpha chain conserved
Atu2205 -1.8 -6.1 transcriptional regulator, MarR family compare
Atu2548 -1.8 -12.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0225 -1.7 -1.4 hypothetical protein compare
Atu4540 -1.7 -3.9 protocatechuate 3,4-dioxygenase subunit beta compare
Atu2493 -1.7 -11.1 NAD(P)+ transhydrogenase compare
Atu1446 -1.7 -3.3 two component response regulator compare
Atu1456 -1.7 -9.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2640 -1.6 -4.0 hypothetical protein compare
Atu4161 -1.6 -3.2 hypothetical protein compare
Atu4773 -1.5 -2.6 two component response regulator compare
Atu1028 -1.5 -4.0 hypothetical protein compare
Atu2494 -1.5 -8.5 NAD(P)+ transhydrogenase beta chain compare
Atu4616 -1.5 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu8115 -1.5 -5.1 Hypothetical Protein compare
Atu2207 -1.5 -2.8 two component sensor kinase compare
Atu2745 -1.5 -10.4 acetyl-coenzyme A synthetase compare
Atu2155 -1.4 -11.2 methionine synthase compare
Atu3486 -1.4 -4.3 DeoR family transcriptional regulator compare
Atu0047 -1.4 -10.5 malate synthase G compare
Atu2163 -1.4 -2.1 hypothetical protein compare
Atu4098 -1.4 -9.6 quinolinate synthetase compare
Atu3732 -1.4 -6.9 hemolysin compare
Atu4546 -1.3 -4.5 IclR family transcriptional regulator compare
Atu0894 -1.3 -2.2 ABC transporter, membrane spanning protein compare
Atu0029 -1.3 -6.4 S-adenosylhomocysteine hydrolase compare
Atu1369 -1.3 -3.0 HIT family protein compare
Atu0876 -1.3 -2.4 superoxide dismutase compare
Atu6098 -1.3 -1.4 transcriptional regulator, HTH family compare
Atu4217 -1.3 -1.3 TetR family transcriptional regulator compare
Atu4543 -1.3 -4.9 LysR family transcriptional regulator conserved
Atu6114 -1.3 -1.9 hypothetical protein compare
Atu0671 -1.2 -5.1 hypothetical protein compare
Atu0503 -1.2 -8.8 enoyl-CoA hydratase compare
Atu4514 -1.2 -4.3 RpiR family transcriptional regulator compare
Atu0149 -1.2 -4.4 enoyl-(acyl-carrier-protein) reductase compare
Atu2432 -1.2 -1.7 hypothetical protein compare
Atu0608 -1.2 -8.4 transcriptional regulator compare
Atu4166 -1.2 -2.9 UDP-glucose 4-epimerase compare
Atu0607 -1.1 -9.0 isocitrate lyase compare
Atu0641 -1.1 -4.0 hypothetical protein compare
Atu1464 -1.1 -5.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu0501 -1.1 -7.3 acyl-CoA dehydrogenase compare
Atu2684 -1.1 -2.4 hypothetical protein compare
Atu1457 -1.1 -2.8 hypothetical protein compare
Atu0434 -1.1 -2.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4096 -1.0 -5.6 nicotinate-nucleotide pyrophosphorylase compare
Atu0331 -1.0 -1.6 sigma-54 modulation protein compare
Atu2225 -1.0 -6.9 transcriptional regulator compare
Atu1526 -1.0 -5.6 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu3009 -1.0 -1.0 exopolysaccharide production protein compare
Atu4530 -1.0 -4.2 TetR family transcriptional regulator compare
Atu4502 -1.0 -4.3 cobalamin synthesis protein compare
Atu2554 -1.0 -1.4 lysyl-tRNA synthetase compare
Atu0062 -1.0 -4.8 transcriptional regulator, ROK family compare
Atu1462 -0.9 -6.3 glycine cleavage system protein P2 compare
Atu1254 -0.9 -1.4 transcriptional regulator, ArsR family compare
Atu0606 -0.9 -1.6 hypothetical protein compare
Atu3290 -0.9 -5.5 phosphomethylpyrimidine kinase compare
Atu2439 -0.9 -1.2 hypothetical protein compare
Atu0188 -0.9 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu0981 -0.9 -6.0 glutamate-ammonia-ligase adenylyltransferase compare
Atu2224 -0.9 -5.6 aldehyde dehydrogenase compare
Atu3120 -0.9 -1.3 hypothetical protein compare
Atu4097 -0.9 -5.2 L-aspartate oxidase compare
Atu2184 -0.9 -4.1 transcriptional regulator, AsnC family compare
Atu2028 -0.9 -2.8 transcriptional regulator, ArsR family compare
Atu1163 -0.9 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0025 -0.9 -2.3 hypothetical protein compare
Atu4897 -0.9 -1.1 hypothetical protein compare
Atu0626 -0.9 -5.7 alcohol dehydrogenase compare
Atu2726 -0.9 -7.0 pyruvate carboxylase compare
Atu2017 -0.9 -1.3 hypothetical protein compare
Atu0502 -0.9 -3.5 acetyl-CoA acetyltransferase compare
Atu3718 -0.9 -4.0 hypothetical protein compare
Atu2376 -0.9 -0.8 hypothetical protein compare
Atu1463 -0.9 -4.3 glycine cleavage system component H compare
Atu2821 -0.8 -4.0 transcriptional regulator, GntR family compare
Atu2491 -0.8 -1.7 hypothetical protein compare
Atu2267 -0.8 -5.6 hypothetical protein compare
Atu2831 -0.8 -3.2 glucose inhibited division protein A compare
Atu3963 -0.8 -5.3 GntR family transcriptional regulator compare
Atu2694 -0.8 -2.8 hypothetical protein compare
Atu5125 -0.8 -3.5 GntR family transcriptional regulator compare
Atu1774 -0.8 -5.0 ABC transporter, substrate binding protein (peptide) compare
Atu4545 -0.8 -4.7 AraC family transcriptional regulator compare
Atu2832 -0.8 -3.1 tRNA modification GTPase compare
Atu2555 -0.8 -2.5 L-lysine 2,3-aminomutase compare
Atu3775 -0.8 -1.2 hypothetical protein compare
Atu0601 -0.8 -5.3 oxidoreductase compare
Atu1646 -0.7 -3.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu5115 -0.7 -2.0 hypothetical protein compare
Atu2249 -0.7 -1.2 hypothetical protein compare
Atu2183 -0.7 -4.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2379 -0.7 -4.8 phosphomannomutase compare
Atu4743 -0.7 -3.3 LacI family transcriptional regulator compare
Atu3337 -0.7 -4.0 LacI family transcriptional regulator compare
Atu4685 -0.7 -3.5 LacI family transcriptional regulator compare
Atu0189 -0.7 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu4187 -0.7 -1.1 tRNA-Met compare
Atu4711 -0.7 -2.6 two component sensor kinase compare
Atu1572 -0.7 -3.9 hydrolase compare
Atu1748 -0.7 -4.1 NIFU-like protein compare
Atu3356 -0.7 -5.2 malic enzyme compare
Atu2462 -0.7 -1.7 hypothetical protein compare
Atu4053 -0.7 -1.4 succinoglycan biosynthesis protein compare
Atu1904 -0.7 -3.1 transcriptional regulator compare
Atu1364 -0.7 -3.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0895 -0.7 -1.0 ABC transporter, substrate binding protein compare
Atu4544 -0.6 -4.3 4-hydroxybenzoate 3-monooxygenase compare
Atu0422 -0.6 -1.9 ABC transporter, membrane spanning protein compare
Atu2125 -0.6 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2209 -0.6 -2.4 pyrroline-5-carboxylate reductase compare
Atu2569 -0.6 -4.9 thiamine biosynthesis protein compare
Atu5142 -0.6 -1.2 hypothetical protein compare
Atu3485 -0.6 -3.5 short chain dehydrogenase compare
Atu0026 -0.6 -0.8 hypothetical protein compare
Atu0382 -0.6 -2.1 hypothetical protein compare
Atu3663 -0.6 -1.2 hypothetical protein compare
Atu0533 -0.6 -1.7 putative inhibitor of septum formation compare
Atu3627 -0.6 -1.9 hypothetical protein compare
Atu0972 -0.6 -2.4 lipA protein compare
Atu0354 -0.6 -1.6 ferric uptake regulator compare
Atu4501 -0.6 -3.3 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Agrobacterium fabrum C58

For carbon source 4-Hydroxybenzoic Acid across organisms