Experiment set10H23 for Pseudomonas stutzeri RCH2

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
Psest_3944 -7.6 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0508 -7.5 -5.2 gamma-glutamyl phosphate reductase compare
Psest_0279 -6.6 -6.5 methionine biosynthesis protein MetW compare
Psest_3647 -6.6 -6.4 Indole-3-glycerol phosphate synthase compare
Psest_3648 -6.4 -7.7 anthranilate phosphoribosyltransferase compare
Psest_2578 -6.2 -11.2 O-succinylhomoserine sulfhydrylase compare
Psest_0063 -6.1 -9.4 tryptophan synthase, beta subunit compare
Psest_3818 -6.0 -9.2 endoribonuclease L-PSP, putative compare
Psest_3298 -6.0 -10.8 histidinol dehydrogenase compare
Psest_0062 -6.0 -12.8 tryptophan synthase, alpha subunit compare
Psest_2591 -5.9 -4.1 3-isopropylmalate dehydratase, large subunit compare
Psest_0153 -5.9 -14.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3650 -5.9 -16.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0155 -5.9 -5.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0952 -5.8 -4.0 Uncharacterized conserved protein compare
Psest_3384 -5.8 -8.9 glutamate 5-kinase compare
Psest_3649 -5.7 -11.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2590 -5.7 -1.6 3-isopropylmalate dehydratase, small subunit compare
Psest_0280 -5.7 -16.3 homoserine O-acetyltransferase compare
Psest_3864 -5.5 -17.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3226 -5.5 -1.6 Predicted membrane protein compare
Psest_3299 -5.4 -15.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3866 -5.4 -20.8 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2584 -5.4 -6.4 Phosphoribosylanthranilate isomerase compare
Psest_0313 -5.0 -6.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0954 -4.9 -11.7 Fe-S oxidoreductase compare
Psest_0325 -4.8 -13.1 Putative threonine efflux protein compare
Psest_0953 -4.8 -10.2 iron-sulfur cluster-binding protein compare
Psest_0152 -4.8 -5.9 Imidazoleglycerol-phosphate dehydratase compare
Psest_0326 -4.6 -12.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0170 -4.6 -10.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_1473 -4.6 -8.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0687 -4.5 -10.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3297 -4.5 -11.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1037 -4.5 -3.5 acetolactate synthase, small subunit compare
Psest_3943 -4.4 -7.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1772 -4.4 -5.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3766 -4.3 -4.5 Uncharacterized protein conserved in bacteria compare
Psest_2589 -4.2 -12.0 3-isopropylmalate dehydrogenase compare
Psest_3998 -4.0 -9.2 glutamate--cysteine ligase compare
Psest_1295 -3.9 -6.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3721 -3.6 -8.5 Malic enzyme compare
Psest_2579 -3.6 -3.5 amidophosphoribosyltransferase compare
Psest_1686 -3.5 -6.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2329 -3.5 -16.0 Transcriptional regulator compare
Psest_4084 -3.3 -17.5 oxaloacetate decarboxylase alpha subunit compare
Psest_0955 -3.2 -7.8 D,L-lactate:H+ symporter (from data) compare
Psest_2088 -3.1 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_0327 -2.9 -4.9 Transcriptional regulator compare
Psest_4085 -2.9 -15.4 Biotin carboxylase compare
Psest_0489 -2.6 -1.8 phosphoserine phosphatase SerB compare
Psest_2988 -2.5 -8.6 aspartate kinase, monofunctional class compare
Psest_4086 -2.5 -11.4 Transcriptional regulator compare
Psest_1679 -2.5 -3.1 ribonuclease, Rne/Rng family compare
Psest_1292 -2.3 -9.6 monothiol glutaredoxin, Grx4 family compare
Psest_3159 -2.1 -6.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2872 -2.1 -2.0 protein RecA compare
Psest_2104 -2.1 -2.0 IscR-regulated protein YhgI compare
Psest_1013 -2.1 -2.4 phosphoribosylamine--glycine ligase compare
Psest_0411 -2.0 -9.3 biotin synthetase compare
Psest_3850 -2.0 -1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1474 -2.0 -1.4 phosphoribosylaminoimidazole synthetase compare
Psest_2527 -2.0 -7.5 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3123 -2.0 -2.3 dihydroorotase, homodimeric type compare
Psest_1012 -1.9 -5.3 Signal transduction histidine kinase compare
Psest_3146 -1.8 -2.2 hypothetical protein compare
Psest_0415 -1.8 -4.5 dethiobiotin synthase compare
Psest_4370 -1.7 -3.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0442 -1.7 -2.5 ATPases of the AAA+ class compare
Psest_2864 -1.7 -3.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3809 -1.7 -4.4 hypothetical protein compare
Psest_1527 -1.7 -11.1 Na+/proline symporter compare
Psest_4044 -1.6 -2.9 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3351 -1.6 -4.8 peptide chain release factor 3 compare
Psest_0722 -1.6 -6.9 Predicted ATPase compare
Psest_2680 -1.6 -5.7 transcriptional regulator, BolA protein family compare
Psest_4219 -1.6 -2.4 DNA polymerase I compare
Psest_2809 -1.5 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0297 -1.5 -4.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2714 -1.5 -2.6 7-cyano-7-deazaguanine reductase compare
Psest_3536 -1.5 -1.4 hypothetical protein compare
Psest_2643 -1.5 -2.1 Beta-glucosidase-related glycosidases compare
Psest_3810 -1.4 -1.6 orotate phosphoribosyltransferase compare
Psest_2708 -1.4 -7.3 transaldolase compare
Psest_1277 -1.4 -8.1 2-isopropylmalate synthase, yeast type compare
Psest_0706 -1.4 -7.7 His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_3767 -1.4 -3.6 tyrosine recombinase XerC compare
Psest_2810 -1.4 -4.4 5'/3'-nucleotidase SurE compare
Psest_3664 -1.4 -0.9 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0306 -1.3 -9.3 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_2090 -1.3 -3.2 Protein of unknown function (DUF2970). compare
Psest_1947 -1.3 -0.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2240 -1.3 -2.1 hypothetical protein compare
Psest_2316 -1.3 -8.6 phosphoenolpyruvate synthase compare
Psest_3148 -1.2 -1.1 hypothetical protein compare
Psest_0718 -1.2 -3.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_3550 -1.2 -1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1920 -1.2 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3288 -1.2 -7.0 type IV-A pilus assembly ATPase PilB compare
Psest_2725 -1.2 -3.7 hypothetical protein compare
Psest_0412 -1.2 -6.8 8-amino-7-oxononanoate synthase compare
Psest_1704 -1.1 -1.4 Dehydrogenases (flavoproteins) compare
Psest_1486 -1.1 -2.3 hypothetical protein compare
Psest_1313 -1.1 -1.6 Uncharacterized conserved small protein compare
Psest_0175 -1.1 -4.6 Xaa-Pro aminopeptidase compare
Psest_4170 -1.1 -1.5 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3287 -1.1 -3.7 Type II secretory pathway, component PulF compare
Psest_3391 -1.1 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_4142 -1.1 -1.5 hypothetical protein compare
Psest_4396 -1.1 -5.3 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_4083 -1.1 -6.8 Predicted permease compare
Psest_4078 -1.0 -1.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3247 -1.0 -0.9 Uncharacterized membrane protein compare
Psest_0260 -1.0 -1.2 Cell division protein compare
Psest_0413 -1.0 -3.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2327 -1.0 -5.0 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0491 -1.0 -5.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_1322 -1.0 -1.1 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_0300 -1.0 -5.1 Methyl-accepting chemotaxis protein compare
Psest_1741 -1.0 -1.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3573 -1.0 -3.2 dTDP-4-dehydrorhamnose reductase compare
Psest_3806 -1.0 -3.1 Phosphomannomutase compare
Psest_3670 -1.0 -5.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_3419 -1.0 -5.2 Predicted transcriptional regulators compare
Psest_3129 -1.0 -0.8 tyrosine recombinase XerD compare
Psest_2863 -1.0 -4.1 Transcriptional regulator compare
Psest_0445 -0.9 -6.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0212 -0.9 -1.4 exodeoxyribonuclease V, gamma subunit compare
Psest_1813 -0.9 -6.0 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_1597 -0.9 -3.7 Protein of unknown function (DUF2933). compare
Psest_3139 -0.9 -3.0 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_2325 -0.9 -5.5 alpha-L-glutamate ligase-related protein compare
Psest_2324 -0.9 -6.9 hypothetical protein compare
Psest_3377 -0.9 -0.8 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0296 -0.9 -4.7 glutathione synthetase, prokaryotic compare
Psest_0285 -0.9 -4.8 pilus retraction protein PilT compare
Psest_1815 -0.9 -6.5 pseudaminic acid synthase compare
Psest_0024 -0.9 -4.5 LysM domain. compare
Psest_3732 -0.9 -4.0 polyphosphate kinase 1 compare
Psest_3375 -0.9 -3.8 prepilin-type N-terminal cleavage/methylation domain compare
Psest_1509 -0.9 -4.1 quinolinate synthetase complex, A subunit compare
Psest_4298 -0.9 -1.0 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2266 -0.9 -2.1 hypothetical protein compare
Psest_2331 -0.9 -4.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_3322 -0.9 -7.1 TIGR02099 family protein compare
Psest_1695 -0.9 -2.5 Tfp pilus assembly protein PilZ compare
Psest_2885 -0.9 -0.9 Acyl carrier protein compare
Psest_1082 -0.9 -1.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2531 -0.9 -5.5 cytochrome c oxidase accessory protein FixG compare
Psest_2037 -0.9 -2.9 uroporphyrin-III C-methyltransferase compare
Psest_0120 -0.9 -4.3 hypothetical protein compare
Psest_2907 -0.9 -1.1 Protein of unknown function (DUF3618). compare
Psest_3836 -0.9 -3.6 L-lactate permease compare
Psest_3878 -0.9 -2.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3954 -0.8 -2.4 Small protein A (tmRNA-binding) compare
Psest_3339 -0.8 -4.0 Signal transduction histidine kinase compare
Psest_0414 -0.8 -2.7 biotin biosynthesis protein BioC compare
Psest_1814 -0.8 -5.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1103 -0.8 -2.5 GTP-binding protein YchF compare
Psest_3537 -0.8 -2.9 hypothetical protein compare
Psest_3692 -0.8 -2.5 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_3908 -0.8 -1.1 Cytochrome c553 compare
Psest_3700 -0.8 -1.0 hypothetical protein compare
Psest_0294 -0.8 -2.3 Putative transcriptional regulator compare
Psest_0154 -0.8 -1.8 Uncharacterized conserved protein compare
Psest_2532 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3843 -0.8 -3.8 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0708 -0.8 -0.8 outer membrane assembly lipoprotein YfiO compare
Psest_0334 -0.8 -1.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0498 -0.8 -0.5 ribosome small subunit-dependent GTPase A compare
Psest_0277 -0.8 -1.1 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_2651 -0.8 -2.1 DNA topoisomerase I, bacterial compare
Psest_3988 -0.8 -4.8 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_0958 -0.8 -3.4 Oligoketide cyclase/lipid transport protein compare
Psest_1075 -0.8 -4.1 Predicted transcriptional regulators compare
Psest_3828 -0.8 -1.2 zinc-binding alcohol dehydrogenase family protein compare
Psest_2321 -0.8 -3.9 methylisocitrate lyase compare
Psest_3927 -0.8 -2.9 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2946 -0.8 -2.1 septum site-determining protein MinD compare
Psest_3715 -0.8 -5.8 type IV pilus secretin (or competence protein) PilQ compare
Psest_2285 -0.8 -1.8 ATP-dependent protease La compare
Psest_1031 -0.8 -4.1 Uncharacterized protein conserved in bacteria compare
Psest_1563 -0.8 -1.9 Protein of unknown function (DUF548). compare
Psest_2323 -0.8 -5.4 Uncharacterized protein conserved in archaea compare
Psest_0999 -0.8 -1.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0919 -0.8 -1.3 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_0393 -0.8 -4.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_3718 -0.8 -3.5 Tfp pilus assembly protein PilN compare
Psest_2158 -0.8 -5.6 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase compare
Psest_4005 -0.8 -2.8 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB compare
Psest_2488 -0.8 -2.7 Predicted membrane protein compare
Psest_2757 -0.8 -1.0 hypothetical protein compare
Psest_1560 -0.7 -2.6 hypothetical protein compare
Psest_1456 -0.7 -2.6 Protein of unknown function (DUF2892). compare
Psest_0998 -0.7 -1.6 poly(A) polymerase compare
Psest_1724 -0.7 -2.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3719 -0.7 -4.7 type IV pilus assembly protein PilM compare
Psest_1139 -0.7 -2.6 PAS domain S-box compare
Psest_0705 -0.7 -4.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2764 -0.7 -0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments

For carbon source Sodium L-Lactate across organisms