Protein Info for Psyr_4035 in Pseudomonas syringae pv. syringae B728a

Annotation: insecticidal toxin protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1617 PF20220: ABC_toxin_N" amino acids 8 to 141 (134 residues), 93.9 bits, see alignment E=9.6e-31 PF18413: Neuraminidase" amino acids 171 to 337 (167 residues), 93.6 bits, see alignment E=1.7e-30 PF18276: TcA_TcB_BD" amino acids 1326 to 1614 (289 residues), 277.9 bits, see alignment E=1.3e-86

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4035)

Predicted SEED Role

"FIG00957719: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZP57 at UniProt or InterPro

Protein Sequence (1617 amino acids)

>Psyr_4035 insecticidal toxin protein, putative (Pseudomonas syringae pv. syringae B728a)
MSDTLESRLNESFRDALVAYYLGEVVPNDPMLKRLGLDQRLKTANDLYEFFLLDNQVGNE
VQTSYVASAMSSLQQLINGTLLGMEPGYETLLPTEARFVEWRERSSQYPIWAANMQLALY
PEIYISPALRLKKSGYFTQLENDINQNRINVDTAQEAVKAYLASFEEVANLTIINGYIDS
DRFAQGKYYFIGTSRAENIYYWRTVDMNERAYQEGTEGPKFDNPTPGAWSDWKRAEIGIN
ANTLERTIRPVYFNNRLFVAWVDLVHVTEQVAVTLPEGTVKPAADGSIPITPPADIAPLT
VVTPNVRLVFNISYKKYDDSWSAPHIYMDVTTPNVVTRAGKAVNLENDLNSIAIFDVSAS
PESLFIAMYAGETLAPGDTDGSTSTYAFLHTAFIDKNFNKTPAFPVANYVDAVSDKADLG
PEQPRVRKTCWAFALKNKGNFQFTWSLYIRLKPSLTTSPNTGDTWWDYQDHQEAIAQMTG
IYAPRLDLENATLKLSTAITKDILIKGTTKTTLVLTEPASQWTFEFITTPYDLDLDQNSF
ILQNGSNLKIESTGGYWGDLSLNLYSAVDALPSSTAFLRNQHNSYYRIERYTTNWNLGGG
KLKVGAVELMSLAATDPEVISSALIALIQGETSYDLYPSVHVGPHYADTLSFAQWFSYPL
DMSVPHNNSQKHLTARPPTGSITAPSRYETTITFDKSTLLPNLPQTRFISGSKKFYITHG
VGVNSVNPPVWIGNALKSTEIELEWATADGGDPIAPKISKRISAILGIAEYIDFSASSIR
FSDNSTTDTRDPIRMNTLFARELINKANIALEALLSWDTQQLQEPPIGDDAIADLMDFKG
ANGLYFWELFLHLPFMISHRLNLEQRFTDAERWLGFIFDPGRKKTSDAPAYWNVRPLVEV
PDPDYFLRAPIDPDGIAASDPVRYQKAVYFHYIKNLIDRGDMAYRQLTPDSLGEAKLWYV
RILDLLGPRPDVKLISQWTPVALGDLATSSSPGLRAFEQQLVEQEQQVRTSAAVNDGKAT
VSFSQPSLRLSTFGSDPTLNEEDSDHFILPMNSELVKYWDMLESRLYNLRHNMTLDGKPL
SLPLFAAPLDPRALLAAYANGATDGGAGSLLAQDTPHYRYPVMFARASAAVETLIQFGFT
LLSIIERKEQGQLMELQQQQVWEFAQYAIDLQLEAQKVEVQARKALEASKAVIDARAGFY
GQLAAENVSAVEIAAGAAKLVSRIAESAASAASIVASAMKVAPNHAGIHAGATGGMAVGA
AAGGAVGGFRLEGVPEMVATGAHAFAARSAAVSDALERTEMFRRRLQEWEHARDQALLES
EQITLQLAVHDAQTRVTALQLRQAQEAKKQAETVYAFLNKRFTNSQLYQWLNGQFSTFYY
QAYDATFSLCLATQACWQYEIADYSASFIQPAAWKDAWRGLAAGEALKLNLLRMDAAYMA
RNERKMEIVKTVSVRQLPITEGDAAGINHGWDAVVERLAQDGIAEFEITRAMLDDDYPGH
YLRRIRRISVSLPVTVGPYQDIRATLTQSYSAVQMDAQPDAPLKENMRASQQIALSTGVD
DDGLFVFNFDDERYLPFEGTGAISRWTLSFSNPASQRDMIDSITDIIVHMRYTAKSR