Protein Info for Psyr_3872 in Pseudomonas syringae pv. syringae B728a

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 TIGR04122: putative exonuclease, DNA ligase-associated" amino acids 4 to 328 (325 residues), 490.7 bits, see alignment E=7.8e-152

Best Hits

KEGG orthology group: K07577, putative mRNA 3-end processing factor (inferred from 100% identity to psb:Psyr_3872)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPM0 at UniProt or InterPro

Protein Sequence (348 amino acids)

>Psyr_3872 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a)
MDLVVARPEGLYCPPGDFYIDPWRPVERAVITHAHGDHARTGNEHYLSAASGEGILRSRL
GQNINLQTLEYGETITHHGVKLSLHPAGHVLGSAQVRLEYQGEVWVASGDYKVEPDGTCA
AFEPVRCHTFITESTFGLPIYRWAPQAQIFEGINQWWRANAAQGKASVLFAYSFGKAQRI
LHGIDAQIGPILVHGAVEPLNRVYREGGIYIPETQYAGDFKKTDPALRQALILAPPSAGG
SSWMKRFGEYSDAFASGWMMLRGTRRRRGVDRGFVLSDHADWPGLLWAVEQTGAERVMVT
HGSVGILVRYLRELGLDAQGFSTEYGDEEDSNPAAGEPEAAGTGEAQS