Protein Info for Psyr_3823 in Pseudomonas syringae pv. syringae B728a

Annotation: Hemolysin-type calcium-binding region:Putative Ig

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1610 PF12708: Pect-lyase_RHGA_epim" amino acids 2 to 240 (239 residues), 85.2 bits, see alignment E=1.8e-27 PF13229: Beta_helix" amino acids 133 to 244 (112 residues), 43.1 bits, see alignment 1.1e-14 amino acids 236 to 370 (135 residues), 33.9 bits, see alignment E=7.2e-12 PF00353: HemolysinCabind" amino acids 383 to 411 (29 residues), 23.4 bits, see alignment (E = 1.4e-08) amino acids 403 to 437 (35 residues), 35.3 bits, see alignment (E = 2.6e-12) amino acids 413 to 439 (27 residues), 28 bits, see alignment (E = 5e-10) amino acids 536 to 570 (35 residues), 34.5 bits, see alignment (E = 4.7e-12) amino acids 563 to 586 (24 residues), 24.2 bits, see alignment (E = 8e-09) amino acids 795 to 830 (36 residues), 27.6 bits, see alignment (E = 6.9e-10) amino acids 814 to 847 (34 residues), 28 bits, see alignment (E = 5e-10) amino acids 823 to 848 (26 residues), 21.1 bits, see alignment (E = 7.2e-08) amino acids 1229 to 1263 (35 residues), 31.2 bits, see alignment (E = 5.1e-11) amino acids 1313 to 1346 (34 residues), 21.7 bits, see alignment (E = 4.7e-08) amino acids 1399 to 1424 (26 residues), 18.9 bits, see alignment (E = 3.7e-07) amino acids 1455 to 1486 (32 residues), 24 bits, see alignment (E = 9.1e-09) amino acids 1461 to 1495 (35 residues), 33.1 bits, see alignment (E = 1.3e-11) amino acids 1479 to 1511 (33 residues), 35.4 bits, see alignment (E = 2.6e-12) PF08548: Peptidase_M10_C" amino acids 413 to 511 (99 residues), 33.1 bits, see alignment 1.5e-11 amino acids 558 to 670 (113 residues), 26.3 bits, see alignment 1.8e-09 amino acids 807 to 888 (82 residues), 29 bits, see alignment 2.6e-10 amino acids 1494 to 1610 (117 residues), 27.5 bits, see alignment 7.8e-10 TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 609 to 670 (62 residues), 20.7 bits, see alignment (E = 7.3e-08) PF05345: He_PIG" amino acids 692 to 786 (95 residues), 75.2 bits, see alignment 1.4e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3823)

Predicted SEED Role

"mannuronan C-5-epimerase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPR9 at UniProt or InterPro

Protein Sequence (1610 amino acids)

>Psyr_3823 Hemolysin-type calcium-binding region:Putative Ig (Pseudomonas syringae pv. syringae B728a)
MIFNTKDFGALGDGVTDDTAAIQAAIDAAAAAGGGEVVMGAGTYVVSGGEEPSDGCLMLK
SNVTLSGAGMGETIIKLADGSDTKVTGIVRSAYGEETHDFGMKNLTLDGNRDATTGKVDG
WFNGYIPGSDGKDSNVTLDSVEIKDCSGYGFDPHEQTVNMVIKNSVSHGNGLDGFVADYL
SDSVFENNVAYDNDRHGFNVVTSTHDFTLSNNVAYGNGSTGIVVQRGSENIPSPANITIT
GGAVYGNAAEGVLIKLSSQVSVSGVDIHDNGNAGVRIYGSSGVDIFDNTLSNNALGSAVP
EIIIQSYDDTTGVSGKFFSGSDNLIRGNTITGSDNSTYGVAERNEDGTDRNSIVGNTISH
TSKGLTLVYGDGSFAGDAFPLVTVNGTEGNDVITGGAAHEQIFGLAGKDTLNGGSGDDIL
VGGAGADKLTGGAGADTFRFDQLTDSYRTATTSSTDLVTDFDISQDRIDLTNLGFTGLGS
GKGGTLNISYNATLDRTYVKSLDADASGNRFELGLSGNLKDTLNASHFIFQHVVEGTAGG
DTLTGTDGNDVLNGNAGTDRIDGGAGADTITGGADADTLTGGAGADLFIYNSRLDSYRNY
TASGTKQSDTITDFNPAEDRIDLSSIGLRGIGDGSANTIYLSVNADGSKTYIKTDAVDST
GNRFEIALQGNLADKLSASNFIFSTASAANQAPVLNTPLMDQNVTELKAFSYAVQPGSFS
DPDSDTLTYSATLADNSALPEWLKFDSKTLTFSGTPGGTASGLYSVLLTASDATGASVAD
SFAINVGNVTPGILTGTENAEALYGTEGNDTILGLGGDDTLRGDTGADIINGGAGRDALY
GGADADTFVYSALTDSYRDYDAGGLTATDTIYDFTPGQDKIDVSALGFLGLGNGEDHTLY
MTLNETGDKTYIKSATADADGNRFEIALSGNLIDTLTDADFVFGQREAQEILYLPTLGQS
NARLLRMTEDDNQSGTSEMVKDLTRYTDYDVRSQFTDANGDGIDLAVGGSTVVGYSTGTQ
DEQRVSWWLVDTDEPGPALLRATELLKSQLASLTAIDKVTTGIIWGQGEEAAQEIARATD
KQAAAELYKASTLKVFDYLHAQIGDFTVYIAETGHYQTDAAKARGYTDEKINAIVEGAGY
VRSVQEAIATERADVKLAVDYTDLPLRYEVNPLVYPDDVWHLHEESAEIVGQRLADFIAD
DLGFQGNAADNNDPAAIFESGQNEGGHIFGTSDDDTLVGSSGNDVLDGDQGADDMSGGDG
NDIYVVDNAFDTVTESNDSPSQVDTVVSSVSWTLGANVENLVLTGVSAINGIGNAVKNVI
IGNASNNILDGAAGADMLTGGDGSDSYYVDDAADRVVETNTDAQVGGVDTVYSSLASYTL
GANLENLVINSSGAANATGNALDNLIYAGAGDNVMDGRDGNDTVSYLFATAGVTVALNTS
AQQATGGSGLDTLKGTENLIGSQFADTLTGNKNANTLSGGDGNDTLSGGAGDDVLIGGSG
ADTLIGGTGADHYVFNGISDTGLGGLRDIINGFKTVEGDKLDFSGFDARPLTDGHDAFVF
IGNAAFSANNSGELRFADGVLYGNIDDNVGADFEIQLTGVQTLQAADIIV