Protein Info for Psyr_3229 in Pseudomonas syringae pv. syringae B728a

Annotation: Glycosyl transferase, group 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 PF13439: Glyco_transf_4" amino acids 13 to 165 (153 residues), 33.4 bits, see alignment E=1.1e-11 PF00534: Glycos_transf_1" amino acids 174 to 323 (150 residues), 87.3 bits, see alignment E=2.3e-28 PF13692: Glyco_trans_1_4" amino acids 177 to 315 (139 residues), 83.6 bits, see alignment E=4.3e-27 PF13524: Glyco_trans_1_2" amino acids 200 to 335 (136 residues), 29.2 bits, see alignment E=2.1e-10 PF20706: GT4-conflict" amino acids 204 to 304 (101 residues), 27.2 bits, see alignment E=5.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3229)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZRG1 at UniProt or InterPro

Protein Sequence (371 amino acids)

>Psyr_3229 Glycosyl transferase, group 1 (Pseudomonas syringae pv. syringae B728a)
MIFINARFLTQDISGVQRYAEQMCRALKRLRDDLVFVAPHNIRLHDCASALEAHCIGRSI
GHAWEQIDLPLYLKRRGSPLLISISNTGPMLYGNQIATHHDINYVRYPQSYTRLFRLAYR
TITPILLSRARTLITGSHFSRKEISSFYGYAEDKVLVVPAAVSDDFIPGPTAVNRPKYLL
AVSSPAVHKNFRRMIQAFLSLRGHTDLQLHIVGAASALFADPNLQHLACRDPRIRFLGRL
SDAELIAQYQGATAFVFPSLYEGFGIPPLEAQACGCPVLAANAASIPEVLQASALYFDPL
DVSHMAAAMQRILLDAPLRNALRVQGLQNVQRFSWELSAQRLSQRIDTLLASDPVQQSKL
HVAADSPSGKP