Protein Info for Psyr_2034 in Pseudomonas syringae pv. syringae B728a

Annotation: Outer membrane autotransporter barrel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 732 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF03212: Pertactin" amino acids 311 to 423 (113 residues), 95.8 bits, see alignment E=2.8e-31 TIGR01414: outer membrane autotransporter barrel domain" amino acids 326 to 732 (407 residues), 338.6 bits, see alignment E=3.2e-105 PF03797: Autotransporter" amino acids 471 to 711 (241 residues), 177.7 bits, see alignment E=5.9e-56

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2034)

Predicted SEED Role

"Outer membrane autotransporter barrel"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUU5 at UniProt or InterPro

Protein Sequence (732 amino acids)

>Psyr_2034 Outer membrane autotransporter barrel (Pseudomonas syringae pv. syringae B728a)
MNAPFVLRPLSWTLKTVIFLSPLLPGSHAFAQILVNAPQTIDATGPLDSYRVVSTGNLTA
NGATTLQISTITGAKLTLTGSQVSAGTSSSAVSLTGADALIVGSVLTGGADGLGMGNESA
RLVGSTATVIGSTITATNRGINAGSLSNLTLEGTSVTATGANGRGMEMWDSTVKASGSTI
TGQQYGVRLRADPAVPSSNQLVLDGTRVEGITGSALIVGMPTGAPATADIRVNNGSTLTG
GNGRILELINGSTAHMTVDNSHLLGDVSADAGSTASLSLQNNATLTGRLENVSSLSLSSQ
GQWVMVENGQVNALAMDGGSVRFGDAASFYTLSLASLSGSGTFMMDVDFAGKANDFLDIT
GSATGSHTLLVGSTGVDPLSDTSLHVVHAAAGDASFSLAGGAVDLGAWSYDLIKQGDNDW
YLDTATRTISPGAQTVMALFNTAPTVWYGEVSTLRSRMGELRMDEARSGGWIRTYGNKFN
VADASGFGYQQVQSGVALGADGKLPVGAGQWLAGVMIGQSTSDLSLDHGASGKVDSYSLG
AYSTWLNSESGYYIDGVIKLNQFKNKARVNLSDGSRTRGNYDNLGVGASLELGRHIKLDN
GYFLEPYTQLAGLVVQGKDYALDNGMRAEGDRSRSLLGKVGTTAGRSFDLGKGRTLQPYV
RVAVAHEFVNRNEVKVNDNVFNNDLSGSRGELGTGVSVSLSDNLQLHADFDYSNGDAIEQ
PWGASAGLRYSW