Protein Info for Pf6N2E2_794 in Pseudomonas fluorescens FW300-N2E2

Annotation: YD repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1568 transmembrane" amino acids 1393 to 1417 (25 residues), see Phobius details amino acids 1425 to 1446 (22 residues), see Phobius details TIGR03696: RHS repeat-associated core domain" amino acids 1314 to 1392 (79 residues), 61.1 bits, see alignment 1.1e-20

Best Hits

Predicted SEED Role

"YD repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A159ZUT5 at UniProt or InterPro

Protein Sequence (1568 amino acids)

>Pf6N2E2_794 YD repeat protein (Pseudomonas fluorescens FW300-N2E2)
MTDSTAVHSNAFNFMSYIAGGVDPRTNQYTFSINFPEFKPNFLNGPLLSLAMGFNPMNRH
DSGYGTGWNVQQSQYRVQRQILTLNSGERYKVTAQREEGLLVELLMKEKKLNTFRFYRDK
DDDQLYRLVHKSGLVEELRVHGRGDDAVALPVRMIAPEGHAVTLGHLPFGAHDFRLASIS
DERGDLLKVDRQEGSVILDLHPTAGANGTPLARYSMTLDSGTEKYVKVITLPSEAGRNVA
WRLNYRPVGEYTCIVSVETPLGGREEVVYDAQGHEFPTGSGRQPIPRVKEHRVFPGSGQP
MVETHYSFTDGSTYLETNNFLGRNLVLSWNDEGLDNLYQFTGSHYAYGCTEHLMNGGVEV
QRIKRTFNQFHLLTLETTTRNTAQQEVETVYGQIPGGFDGQPDWFQLPHEVTNRWRLGSQ
LRSEKSSSTYDSYGNLLVQTHPTGVVETSFYYDKDGEDGCPKDPDGFVRNLKSQTQTPAP
GYVAGAPTLRTDYRYVLYPSLDGSGRSSWLALERETLTRTAPGAVMELRSTAYEYYHDKD
DAQAHVVHGRLKHQSVALNEKATITAYTYGVTMGTLADETVLQTVETLTTDFDQVHKIIT
LESSLLNGESLLERDDNDVEIRRTYDVLNRVTSETVAPNDPRYKATRNYEYYLSASIGQR
AEQWLFDVKGVKTVTAFDGLNRAVYEERNDADSSQPAMRQTYAAQYDVFGNLIEQTEYDW
WGAQEKPFKTRFLFDDWNQPFCEIGPDGVERYKQVNPIGDRNWSGPIERSWEQDSTKVHF
SGITETRLNLFEKPVQTERLALDESVISRQKYSYDGLGRSVKEELGLRTPLRVTEYSYDA
FDRMTQTILPQGARIVREYAEHSAEDWPTRISVDGQELGTQTFDGLGRMTESVTGGRLQR
YEYDPQQTRPKTVTPASGQTVEYQYMPQLSDEPLRRQLSGGDICNYEYDPANARLTKASV
GGRTLARTYFSFGEPKSETVEADGQTFAMAYEYSFRSRLLSYTDVLDQIQQYEYDPKGRL
ERTSLGTTSSAFTYDALGRVATITTQDIVDGAPARTLGISLEYDEFHRETKRTFDLDGVI
QVLDQVYDEFDCLVRRTLTEGPQTLRDETYAYDLRGRLETYTCAGSQPPIDPYGNRLSGQ
TFIFDAMDNLIIVITETVDGKNNMAEYHYENPQDPAQLSRVTNSGDAGHPDELVLSYDAN
GNLIQDEQGRVLEYDALNRLLSVSESGSGKTGNFQYDPLDRLSNNDDGGGSQQHFYKGDH
IANLVDGERSSTFMRGDDHLLAERQGDNTLLLAGNFTNSVMNEVSSDSTHSLAYSPYGHR
SAEQPISTELGFNGELREAQTGGYMLGKGYRVYSPVLMRFNSPDSWSPFGKGGLNGYAYS
QRPLDEVDPTGHFVVNAALGALLLGVIAASTSVGAALTDDNTARIVFIAIASVAGVASIG
LGVAAFRMTPAPNRMPVAHPRSRTGTASRPTGNVPRPTNDPFAGATAPPLSASAGDPYAP
TAPRLSASSASGRVGDPYAATAPLPSNPPSYSAATAKSGMLPKYTELDFDELLRGATIRM
NGIRSTAP