Protein Info for Pf6N2E2_5777 in Pseudomonas fluorescens FW300-N2E2

Annotation: Rhs family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1552 transmembrane" amino acids 242 to 262 (21 residues), see Phobius details amino acids 286 to 308 (23 residues), see Phobius details amino acids 320 to 340 (21 residues), see Phobius details PF20148: DUF6531" amino acids 404 to 477 (74 residues), 72.7 bits, see alignment 5e-24 TIGR01643: YD repeat (two copies)" amino acids 594 to 635 (42 residues), 17.7 bits, see alignment (E = 4e-07) amino acids 681 to 716 (36 residues), 17.6 bits, see alignment (E = 4.2e-07) amino acids 702 to 730 (29 residues), 28.6 bits, see alignment (E = 1.4e-10) amino acids 764 to 804 (41 residues), 30.6 bits, see alignment (E = 3.4e-11) amino acids 805 to 845 (41 residues), 21.4 bits, see alignment (E = 2.7e-08) amino acids 847 to 888 (42 residues), 35.7 bits, see alignment (E = 8.1e-13) amino acids 1000 to 1031 (32 residues), 25.6 bits, see alignment (E = 1.2e-09) amino acids 1223 to 1255 (33 residues), 35.7 bits, see alignment (E = 8e-13) PF05593: RHS_repeat" amino acids 702 to 732 (31 residues), 36 bits, see alignment (E = 1.4e-12) amino acids 764 to 799 (36 residues), 32.1 bits, see alignment (E = 2.3e-11) amino acids 784 to 820 (37 residues), 28 bits, see alignment (E = 4.6e-10) amino acids 805 to 840 (36 residues), 23 bits, see alignment (E = 1.7e-08) amino acids 826 to 863 (38 residues), 37.7 bits, see alignment (E = 4.2e-13) amino acids 847 to 883 (37 residues), 36.5 bits, see alignment (E = 9.7e-13) amino acids 868 to 905 (38 residues), 24.6 bits, see alignment (E = 5.3e-09) amino acids 980 to 1012 (33 residues), 32.1 bits, see alignment (E = 2.4e-11) amino acids 1223 to 1256 (34 residues), 38.5 bits, see alignment (E = 2.3e-13) PF03527: RHS" amino acids 1304 to 1339 (36 residues), 58.7 bits, see alignment (E = 8.2e-20) TIGR03696: RHS repeat-associated core domain" amino acids 1330 to 1409 (80 residues), 84.8 bits, see alignment 4.4e-28 PF18431: RNAse_A_bac" amino acids 1440 to 1550 (111 residues), 94.6 bits, see alignment 1.4e-30

Best Hits

KEGG orthology group: None (inferred from 95% identity to pba:PSEBR_a4210)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160A6E0 at UniProt or InterPro

Protein Sequence (1552 amino acids)

>Pf6N2E2_5777 Rhs family protein (Pseudomonas fluorescens FW300-N2E2)
MDQVSRIEQELDSFKDTLSVYREQLERWYSRAADRASHMADLPSLMGMERLIRFGDSTTA
VSTGDDDFLSTVVQCPKGGPMTIESKFESVYDIPLGDIVVDVVDVVSGEVTPVTLDAHGL
GTFMGEAGKSYRVHVQGEVSAKQIANLFSSYDGLTTNLTEWLRGEWQGFKPRWAQQSLST
SAASVGNGLLAGSWAAIESAWDSISLLSDILKDPGQFVERLGESARQLEDLAKKTPRVMA
KLQLLASDEAALCLLVRTASLWLDMLPPSELAGETAEALSRATVQLLIDLLIGVVLTFTG
AGAGIAYLSMRLGNVGARLLGVLQRFIGAIFAVVNGFMTYVDRYKTVAARGIAAGVKKGR
MQLRWDAQRNTTLKKHEHHDDAPAQSKNPNGDSADTAAQTQTSGCPVSMVTGEELLTLDD
GTLDGRLPFVFTRLYRTSAADLDVGLGRGWSHALAHRLELEGEQVTWVDQENRRTTFPLP
NAQRPAIHNSLARAAIYLGAEPDELIVAQPGENAPFLHFRDGHLTALSDRYDNRLTLQRN
IHGDISRLDNGAGRALRLRYEQRHLIAVDYQSFHPAITLDEAWRTEQTLMSYRYDGRFRL
IEATNAAGESERYDYDDQHVILQRQLAGGASFYWEWQGAGRAARCVRHWASFAQMDSRYT
WGEDGSVTVQHLDGSQEVYVHDDRARLVRKVEPDGGEHLKAYDEQGRLIAEQDPLGAVTE
YRYDEAGRLLALIPPVDEPTSYEYRNGFLHTRARGQAVWRYRRNARGDVIVLIDPDGRRT
EYAYDAHGQLLATYDPDGGEHRFTWSRLGQLTEEILPDGSRRCFSYDALGRLLSRQDEHG
ALTHYQWDAVGRLLQVTLPNGTTRTWRYNAYGKITAERDEQGRLTRYEYADDLHLVSRRL
NPDGSELKYRYDSARLLLTEIENESGEKYQLDYTPNGLIRQQVGFDGQRTVYAYDLNGHL
LAKTEHGEDGSQRLTQYQRDAAGRLRVKTLPDGQAIEYRYDELGRLVHVNDGSDHPLAFE
YDAQDRLVCEHQGWGTLRYRYDACGRLNHLRLPDDSQLDYHHAPGGALTSIDLNGSRLTE
HRFVGGRERQRQQGRLLSDYDYDEQGRLKAQTVWQSQQQQLFWRDYAYSAKGNLQTLSDN
RNRRSYQYDPLDRLTRIDFSHSEPPEHFCHDPAGNLMMQDRPGPTTLKGNRLLKEGDRHY
DYDAFGNLIRERRGQALVSAYRYDSQHRLIGVTTADGRETSYRYDAFGRRISKTVDGLTT
EFFWQGDQVVAENSPRHHRSYVYEPGTFRPLAMLDGEGPDARPFYYHLDHLGTPQELTNP
AGQIVWSARYNGYGQLTELQHGGGEQLEQPLRFQGQYFDPESGLHYNRHRYYNPGTGRYL
TPDPSKLAGGLNGYRYTVNPTGWVDPLGLACQCPGDIEADGPFSEIVPGGGLATHEAQGG
HLIEKHIGRTDAQLAQRLEAEPHIPAASTFPDRPTAELTAARALAANEKKIEKFLASKKD
KTTINHTFTHPVGISLLNGRTDYLPASKILLVLKKDERRPLGYFVLTGFPEV