Protein Info for Pf6N2E2_1631 in Pseudomonas fluorescens FW300-N2E2

Annotation: SyrP-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF02668: TauD" amino acids 32 to 321 (290 residues), 175.1 bits, see alignment E=1.5e-55

Best Hits

Swiss-Prot: 43% identical to DDAC_ENTAG: Dapdiamide synthesis protein DdaC (ddaC) from Enterobacter agglomerans

KEGG orthology group: None (inferred from 67% identity to reh:H16_B1688)

MetaCyc: 43% identical to N-3-fumaramoyl-(S)-2,3-diaminopropanoyl-[DdaD non-ribosomal peptide synthase] oxygenase (Pantoea agglomerans)
1.14.11.M2 [EC: 1.14.11.M2]

Predicted SEED Role

"SyrP-like protein"

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.14.11.M2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165ZVH7 at UniProt or InterPro

Protein Sequence (329 amino acids)

>Pf6N2E2_1631 SyrP-like protein (Pseudomonas fluorescens FW300-N2E2)
MESGLMRAQVQFMDVVPGNEQTLPFIFQAPLAGDAWQASRAQIQQVVETELPRAGGILFR
GFAFKGEADFEEFARSFGHELLTYDYASTPRTKLNSRVYTSTEYPAHQVIPLHNEQSYSL
NWPMKIWFHCMQASPVGGETPIADSRLVYQQLDPAIRQRFAEKRLMYVRNYGNGLDLPWQ
QAFSTEDRAQVERFCRASNIEFQWTDDGELSTRQVCQAVAQHPVTREWVWFNQAHLFHIS
NLAASVRETLISIVGEEGVPRNVFYGDGSPIELEALEHIREVLQRCQVSFPWQAGDVLML
DNMLVAHGRSTFQGSRKVVVAMAEPASAS