Protein Info for Pf6N2E2_100 in Pseudomonas fluorescens FW300-N2E2

Annotation: membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 76 to 89 (14 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 135 to 154 (20 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 219 to 246 (28 residues), see Phobius details amino acids 253 to 271 (19 residues), see Phobius details amino acids 279 to 297 (19 residues), see Phobius details amino acids 303 to 322 (20 residues), see Phobius details amino acids 342 to 363 (22 residues), see Phobius details amino acids 369 to 388 (20 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 353 (345 residues), 82.5 bits, see alignment E=1.4e-27

Best Hits

KEGG orthology group: None (inferred from 96% identity to pba:PSEBR_a3771)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165YJ79 at UniProt or InterPro

Protein Sequence (403 amino acids)

>Pf6N2E2_100 membrane protein, putative (Pseudomonas fluorescens FW300-N2E2)
MRKDYLAFFVSMFLSRLADQILLFIVPLIVFQTTNSVSWAGLAFFVESLPRYLSFPICGA
LCDKFSPIRILHISQVYRAVACGVAVVLHGVFGGIYWIVALSALCGVLTTQGIMAREVVM
PYIFKHYTYTKTLSYSQIADQTGLVLGPLIAALLLEVWAWHWVVLAIAGLFLLADLAMLY
WQRISSVTLETFEQHHDLWLNPLRIAFGHIRNLAELKKIISLAVGVNLIIGVTLATSAAM
VIGHYGAGKDDYAGLQAAGAVTTILILFLLARLTLPLKLLGALSYTLIAVGAFITALSPN
TGGYVVGFLLIVGFDKMFNVYFRTLRQQVIPPQDFGKTVGVITLLNNLSQPLAGLLVAVL
AAPIGTQQVILLLAVATSLIGAGVVVVHRYSTHRSSIYSAETD