Protein Info for Pf1N1B4_690 in Pseudomonas fluorescens FW300-N1B4

Annotation: Transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 PF06719: AraC_N" amino acids 41 to 191 (151 residues), 171 bits, see alignment E=1.9e-54 PF00165: HTH_AraC" amino acids 215 to 252 (38 residues), 26.9 bits, see alignment 6.2e-10 PF12833: HTH_18" amino acids 225 to 299 (75 residues), 70.4 bits, see alignment E=1.9e-23

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfo:Pfl01_4465)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MSD2 at UniProt or InterPro

Protein Sequence (309 amino acids)

>Pf1N1B4_690 Transcriptional regulator, AraC family (Pseudomonas fluorescens FW300-N1B4)
MSSLDHFQAPLAADMEKQRAELAALIRRNTMEDGTYATAVGSLFMSRHSQNHDFAPVLAQ
PALCIMAQGRKEVRLADEYFNYDPLNYLVVSVSMPLSGRVVNVSPEEPILAVRLDIDPAE
ITALIADAGPIGVPTRPTGRGLYVEQIDTAMLDAVLRLARLLDTPKDIAMLAPLIRREIL
YRLLRSQQGHRLYEIAIANSQSHRISQAIKWLNGNYEQPLRIDDLAREVNLSVSTLHHRF
KAMTAMSPLQYQKQLRLQEARRLMLAEGLEASAAGYRVGYESPSQFSREYSRLFGAPPLR
DLARLRLSV