Protein Info for MPMX19_06461 in Azospirillum sp. SherDot2

Annotation: Tn3 family transposase ISXc4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 transmembrane" amino acids 919 to 936 (18 residues), see Phobius details PF13700: DUF4158" amino acids 5 to 172 (168 residues), 173.4 bits, see alignment E=3.7e-55 PF01526: DDE_Tnp_Tn3" amino acids 584 to 973 (390 residues), 494.1 bits, see alignment E=2.5e-152

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1000 amino acids)

>MPMX19_06461 Tn3 family transposase ISXc4 (Azospirillum sp. SherDot2)
MPVSFLTPEQEKRYGRFPADVSTEQLARYFHLDDTDRTFVLTHRGAHMRLGCALQLGTAR
FLGTFLEDPCAVPARVVHFLGDQLGVPVDGTLDIYRANRWRWRHPVEIRQRYGYRDFSDT
FAQFRLNRWLYALCWTGSDRPSGLFDRATAWLVANKVLLPGATTLERAIAKVRTRASQRL
WRGLTITVTPAQKERLEALLVPTDGARQSPLDRLRLGPTLQSAAELARAIKRLGEVQALV
AGLPRTDRLPKTRILALARFAGAAKAQAVARLPEERRIATLLAFIRTLEASAQDDVLDLF
DVIVTKMFADAIRTGREARLRSLRDLDLAALTLSKVCALVLDGDVGDTELRAAVFAAVPQ
AALEAAVAQVDNLTRPPDDPYFEELLAQHRRIRRFLPHLVLTVGFGAMPAGRPVVQALQH
LRKVEMGGARSDPWPVEFVPKSWERRVIKKGLVDRRAWTLCLIDRLRGALRRRDVFATPS
LRYADPRIGLLDGGAWEAARPAVCRTLGKSMVAAEEIDRLSERLDQTFREVADNLPQNAS
VRIERNGTEDDLVVTGLDRIEDPASLIALRAAVTARLPRVDLPELLLEIDARTGISGAFT
HASEADARAGDFATSLCAVLLAEACNTGLEPLARPDVPSLRRSRLSWVRQNYLRAETLTQ
ANARLVAAQNSIDLARRWGGGDVASADGLRFVVPVRTIHSGPNPKYFGPERGVTYYNLVS
DQFTGLNAITVPGTLRDSLVLLSVVLEQDTEFEPTEIMTDTGAYTDVIFGIFWLLGYQFS
PRIADVGGSRFWRIDPKADYGALGQLASHKVNTDLIAQHWDDLLRLAGSLKLGLVQAGGL
MRTLQTNDRPTRLARALEALGRIIKTLYLLAYINDETYRRRILIQLNRGEGRHQLARIVF
HGKRGELRQHYREGQEDQLGALGLVVNAIILWNTIYMDAALDQLRTEGFDVRDEDVARLS
PLGFDHINMLGRYAFTLPDGVARGELRPLRDPRNAAPDTD