Protein Info for MPMX19_06186 in Azospirillum sp. SherDot2

Annotation: Flagellar biosynthetic protein FlhB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 transmembrane" amino acids 35 to 64 (30 residues), see Phobius details amino acids 85 to 111 (27 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 192 to 213 (22 residues), see Phobius details PF01312: Bac_export_2" amino acids 7 to 349 (343 residues), 368.2 bits, see alignment E=2.1e-114

Best Hits

KEGG orthology group: K02401, flagellar biosynthetic protein FlhB (inferred from 95% identity to azl:AZL_e01230)

Predicted SEED Role

"Flagellar biosynthesis protein FlhB" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (360 amino acids)

>MPMX19_06186 Flagellar biosynthetic protein FlhB (Azospirillum sp. SherDot2)
MAEQDDEQKTEEPTEKRLREAAEKGDVPRARDVGLLSAMVAAWMIVLMAVPGVAASLSAL
LLPLIENPDDIRIDGSAIDVIHSLHWLIGGVAVALLPVLGILLAGVAVSALGQGQFVVAS
DRIRPKWSHLSPASGWTRIAGRPALVEFAKSLVKLAIISAAAWHALAPYIAWTEDTVGMD
VAGLPVLLRDVTLRLLLAVLLATVLMAAVDVLWNRMEWRRRLRMSHQEIKDEFKQIEGDP
NAKARLRDIRRSRSKKRMMANVPRATVVITNPTHFAVALEYERGRTAAPICLAKGADLIA
LRIRALAQEHNIPIVENPPLARALHATAEVDATIPLQHYQAVAEVITYVLKLKGGLARRG