Protein Info for MPMX19_06081 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1168 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 37 to 57 (21 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 114 to 132 (19 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 193 to 216 (24 residues), see Phobius details amino acids 245 to 263 (19 residues), see Phobius details amino acids 283 to 305 (23 residues), see Phobius details amino acids 325 to 346 (22 residues), see Phobius details amino acids 380 to 404 (25 residues), see Phobius details amino acids 410 to 434 (25 residues), see Phobius details amino acids 441 to 463 (23 residues), see Phobius details amino acids 478 to 493 (16 residues), see Phobius details amino acids 500 to 519 (20 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 643 to 774 (132 residues), 24.8 bits, see alignment E=9.9e-10 PF12860: PAS_7" amino acids 651 to 771 (121 residues), 113.5 bits, see alignment E=1.2e-36 PF00512: HisKA" amino acids 806 to 866 (61 residues), 41.5 bits, see alignment 2.2e-14 PF02518: HATPase_c" amino acids 911 to 1023 (113 residues), 78.3 bits, see alignment E=1.2e-25 PF00072: Response_reg" amino acids 1046 to 1155 (110 residues), 42.4 bits, see alignment E=1.5e-14

Best Hits

KEGG orthology group: None (inferred from 95% identity to azl:AZL_e03740)

Predicted SEED Role

"Serine phosphatase RsbU, regulator of sigma subunit" in subsystem SigmaB stress responce regulation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1168 amino acids)

>MPMX19_06081 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MESWFILAASLAYLLSLFAIAWYGDRTGPHGSERRTPWLYALSFGVYCTSWTFYGAVGRA
ATGGFYFLPIYIGPILMIGLGWPVLARIVRVAKSENVVSISDFLSARYGKSRSLAALVTV
AAVIGLLPYIALQLKAISVSFEILAGASLGTDLSQMPGGTALMAALLMAAFAILFGVRSV
SANEHHRGLMMAIAAESVVKLAAALGVGGAIALSVFGDPATFFDAAVRHPGFLELIRMDS
IGTDWWVACLLSGLAILCLPRQFHVAVVENTHGGDVRSSAKLFPAYLVAINIFVLPVALA
GLMLFPDGTTNADTFMVSIPLSQGWPWLALAAFIGGLSAATSMILVEMVALSTMICNDVA
VPLLMALRPDDRRLRDDPAGILLLVRRSAVIVLVLLSYGCYRLIGPAFPLATIGMMSFTA
VAQFAPALLGGLIWSRASRSGAFAGICAGFVGWAYTMLLPSFADAGWLASSALREGPFGL
TGLSPVALAGIAGIDPLTNAALWSLGPNLLLFVVVSLLTRPSTLERQQAARFMSLRRASD
GEPHGPRGATLADLHDLALRYVGQSRADAAFRRFTGVADGDLRTALLMRTDGEAIQLTER
LLAGAVGSASARVVVAGLLSDRRLSRTDARSIIDEASRAILKQHELLRATVENVPQGIAV
FDEDWRVATWNNQFVVLLELPDGFVQVGTSLQDIVGLIARRGEYGRNGEIETLLERRSDP
RRRNKPDVYERVRPDGTVLEIATNPMPGQRPGGGGGFVAVYTDVTERHRAAAALREANET
LERRIEERTHALSEAKAEAERANRGKTRFLAAASHDLLQPLHAARLFLSALGERNGDSAI
RQIDTSLRSVETILGDLLDVSKIDSGVVKPNPVPMRIEELLKPLGEEFTVLASRHGLGLR
VVDCSAIVRSDPTLLRRILQNYLANAVRYTRTGRILLGCRRRGSFLSIEVWDTGPGIPEH
KVPEIFMEFRQLDNDGDDRGDRGKGLGLGLAIVERLAGILGHTVQVRSKVGRGSAFSVLV
PLTDEPVAARAVVVRPRGRDLRGVLVLCLENEPAIARATEDLLSSWSCRVVTAVAPDLAL
AKLEGRTPDVILTDYHLDRSLTGVEALRTLRASLGSDIPAAVVTADRDAAVREDIEAAGC
RLLYKPVRPGALRALLGQLLAERQRMAG